BAC Information

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BAC

Clone NameB6Ng01-251M22
Chromosome13 (Build37)
Map Location 46,705,688 - 46,857,948
singlet/doubletdoublet
Overlap geneCap2, C78339, Nup153, Kif13a
Upstream geneAtxn1, 5033430I15Rik, ENSMUSG00000062282, Gm1574, Rbm24
Downstream geneLOC544928, Nhlrc1, Tpmt, Aof1, Dek, LOC100039761, Ibrdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-251M22.bB6Ng01-251M22.g
ACCGA058969GA058970
length1,1421,098
definitionB6Ng01-251M22.b B6Ng01-251M22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,705,688 - 46,706,821)(46,856,844 - 46,857,948)
sequence
gaattcaaggtcatttttgttccatagaaaatttaagatctgcccggggc
cacatgagaccttgtcttgaaaaaaataaaaaggctgttgagatggctca
gctatcttcttgccaccacacctcgatggcctggttagaattccttcagc
tcgcatagatgaggagagaatggcctctgaaggtgtcctgtgacttccac
aagcacacctcagagtgcataccaatgcatatacgcacacaaattaaatg
aataaatgcaataagacaaccaaaaataagggagtggagacattgctcac
tggtttttgctcttccagagcgccagatttggggtaccatgcaagtcaca
acttcagctccaggggagccaacaccttcatctgtcctctgcagacacct
acaggcccccacacatagtcacatagggggacacacatacaagcataaat
aaaaactttttcatttttttaatacattttttaaaaaaaataagttttaa
aatcctacttttatagggaaagccacatggagaaggggacacagactcct
ggcggacacacacattttataaagaaagctgccccagttttctttcagtg
aataagctgtccccacacaaccacatcactacattttgaattcctgtact
taaagactgaaccaatatgatggaacttgttttgtttggttggttttttt
gtttcatgttttgagacagagtctcttgatgtattctgggctggcctcga
actcatggttattctcccaagtgcctccaaacccagtgggaatttccact
gatcaaagtagaggtagtgagagactggacagagggaatggaggaggcca
acaccaagactgaggagaccatgagataggcaaagggggcacgaaaccag
aaactgagctgaaacagaagctggaaggacagacagctgtcgtctcaata
acccttcagcagctgttgaaagggccagactttttgtttgggaggaccag
ccctgcaaagatctggtgtcctgcagcccagatatggatccctagaagag
actgatctgagttagacgaaaattacaatccaatggagaatagccaggcc
tgagaggattcttagaaaaatgtctctcttagctattataga

gaattcagaggtggaaagtcgtcgtcgtgagctggaattagtctgatcag
aggagcttcagctggatcttgcaaagagttacggggctggagcggcagct
tggtggttagagcacagactctgtcgcagaagacccaggtttgattccca
gcaccagcatggctccttaaaaccatttaaaactccagtccccggggatc
tgacaccctttcctgacctccctgggcatcagacatgtatattgtgcatg
gacatacatgcagataaagcacccatgtgcataaaatagataaatcataa
tatttttttagaaagaaggtttggtttcttgttgctgattctctctcact
cagcagccctttaatacttctttgtggctatagattttattgactctact
ttatcattgcatttatttcgcttatattgcataagtgtgagggagttggg
ggtgtatgtcacagcacacatgttgaggtcacaggacaatttgggggagt
caattctctctttccatcacctggattaaaatccactcaggttgtcaggt
ttggtagcaagccttatccatctctctaacctgattactccctcgtccct
cagccgttgggaggctgaactaaatgcgcgcacacacatactgtttttgc
tgttgtatctgatagcatcatggctgcgggtgcttactttccatggctag
gacaaactaccttagaaaaactcacctgagaaaggttgtttggactcacg
acttcaaaggttttgatcaagggtcggcttgcttcatgcttttggagcag
aggcagagcagaacaccagagtggtaaggggctataatggtgaatgcttc
acacctcaagaaagaagggagagggctggagagatggctcagccatttaa
tataagaaagaaaggagagaggagaatcctcggacaaagctcaccattca
gaggcatacgcctagtgaccctgtccctgcagctcagcccagtcaggcca
ttctgtctgcattgatgagctagcccctctgatatcaatcatataaaagt
gaatgagcttggaaccagctgtgtataggactgactccctgtgcgcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_46705688_46706821
seq2: B6Ng01-251M22.b_48_1189

seq1  GAATTCAAGGTCATTTTTGTTCCATAGAAAATTTAAGATCTGCCCGGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGTCATTTTTGTTCCATAGAAAATTTAAGATCTGCCCGGGGC  50

seq1  CACATGAGACCTTGTCTTGAAAAAAATAAAAAGGCTGTTGAGATGGCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGAGACCTTGTCTTGAAAAAAATAAAAAGGCTGTTGAGATGGCTCA  100

seq1  GCTATCTTCTTGCCACCACACCTCGATGGCCTGGTTAGAATTCCTTCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCTTCTTGCCACCACACCTCGATGGCCTGGTTAGAATTCCTTCAGC  150

seq1  TCGCATAGATGAGGAGAGAATGGCCTCTGAAGGTGTCCTGTGACTTCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCATAGATGAGGAGAGAATGGCCTCTGAAGGTGTCCTGTGACTTCCAC  200

seq1  AAGCACACCTCAGAGTGCATACCAATGCATATACGCACACAAATTAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACACCTCAGAGTGCATACCAATGCATATACGCACACAAATTAAATG  250

seq1  AATAAATGCAATAAGACAACCAAAAATAAGGGAGTGGAGACATTGCTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATGCAATAAGACAACCAAAAATAAGGGAGTGGAGACATTGCTCAC  300

seq1  TGGTTTTTGCTCTTCCAGAGCGCCAGATTTGGGGTACCATGCAAGTCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTTGCTCTTCCAGAGCGCCAGATTTGGGGTACCATGCAAGTCACA  350

seq1  ACTTCAGCTCCAGGGGAGCCAACACCTTCATCTGTCCTCTGCAGACACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGCTCCAGGGGAGCCAACACCTTCATCTGTCCTCTGCAGACACCT  400

seq1  ACAGGCCCCCACACATAGTCACATAGGGGGACACACATACAAGCATAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCCCCCACACATAGTCACATAGGGGGACACACATACAAGCATAAAT  450

seq1  AAAAACTTTTTCATTTTTTTAATACATTTTTTAAAAAAAATAAGTTTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTTTTTCATTTTTTTAATACATTTTTTAAAAAAAATAAGTTTTAA  500

seq1  AATCCTACTTTTATAGGGAAAGCCACATGGAGAAGGGGACACAGACTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTACTTTTATAGGGAAAGCCACATGGAGAAGGGGACACAGACTCCT  550

seq1  GGCGGACACACACATTTTATAAAGAAAGCTGCCCCAGTTTTCTTTCAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGACACACACATTTTATAAAGAAAGCTGCCCCAGTTTTCTTTCAGTG  600

seq1  AATAAGCTGTCCCCACACAACCACATCACTACATTTTGAATTCCTGTACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGCTGTCCCCACACAACCACATCACTACATTTTGAATTCCTGTACT  650

seq1  TAAAGACTGAACCAATATGATGGAACTTGTTTTGTTTGGTTGGTTTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGACTGAACCAATATGATGGAACTTGTTTTGTTTGGTTGGTTTTTTT  700

seq1  GTTTCATGTTTTGAGACAGAGTCTCTTGATGTATTCTGGGCTGGCCTCGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATGTTTTGAGACAGAGTCTCTTGATGTATTCTGGGCTGGCCTCGA  750

seq1  ACTCATGGTTATTCTCCCAAGTGCCTCCAAACCCAGTGGGAATTTCCACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATGGTTATTCTCCCAAGTGCCTCCAAACCCAGTGGGAATTTCCACT  800

seq1  GATCAAAGTAGAGGTAGTGAGAGACTGGACAGAGGGAATGGAGGAGGCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAAGTAGAGGTAGTGAGAGACTGGACAGAGGGAATGGAGGAGGCCA  850

seq1  ACACCAAGACTGAGGAGACCATGAGATAGGCAAAGGGGGCACGAAACCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAAGACTGAGGAGACCATGAGATAGGCAAAGGGGGCACGAAACCAG  900

seq1  AAACTGAGCTGAAACAGAAGCTGG-AGGACAGACAGCTGTCGTCTCAATA  949
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAACTGAGCTGAAACAGAAGCTGGAAGGACAGACAGCTGTCGTCTCAATA  950

seq1  ACCC-TCAGCAGCTGTTGAAAGGG-CAGAC-TTTTGTTT-GGAGGACCAG  995
      |||| ||||||||||||||||||| ||||| |||||||| ||||||||||
seq2  ACCCTTCAGCAGCTGTTGAAAGGGCCAGACTTTTTGTTTGGGAGGACCAG  1000

seq1  -CCTGGAAAGATCTGGTGTCCTGCAGCCCAGATAATGGAT-CCTAG-AGA  1042
       |||| ||||||||||||||||||||||||||| |||||| ||||| |||
seq2  CCCTGCAAAGATCTGGTGTCCTGCAGCCCAGAT-ATGGATCCCTAGAAGA  1049

seq1  GACTGATCTGAGGTTAGAAGGAAAATACAATCAAATGGAG-ATAGCCAGG  1091
      ||||||||||| |||||| | ||| ||||||| ||||||| |||||||||
seq2  GACTGATCTGA-GTTAGACGAAAATTACAATCCAATGGAGAATAGCCAGG  1098

seq1  -CTGAGAAGGGAT--CTAGAAAAATGTCTCT-TAAGCTATTTATAGA  1134
       ||||||  ||||   ||||||||||||||| | ||||| |||||||
seq2  CCTGAGA--GGATTCTTAGAAAAATGTCTCTCTTAGCTA-TTATAGA  1142


seq1: chr13_46856844_46857948
seq2: B6Ng01-251M22.g_69_1166 (reverse)

seq1  AGGCGCACAGGGAGCCAGGCCATTACACAGGCTTGGTCCCCAGCTCAATT  50
      |||||||||||||| ||| ||  |||||||   |||| || ||||||  |
seq2  AGGCGCACAGGGAGTCAGTCCTATACACAG--CTGGTTCCAAGCTCA--T  46

seq1  CCACTTTTATACTGA-TGGTATCAGGAGGGGGCTAGCTTCATCAATGCAG  99
       |||||||||| ||| || ||||||   ||||||||| ||||||||||||
seq2  TCACTTTTATA-TGATTGATATCAG--AGGGGCTAGC-TCATCAATGCAG  92

seq1  ACAG-ATGG-CTGACTGGGCTGAGCTGCAGGGAACAGGGTCACTAGGCGT  147
      |||| |||| |||||||||||||||||||||| |||||||||||||||||
seq2  ACAGAATGGCCTGACTGGGCTGAGCTGCAGGG-ACAGGGTCACTAGGCGT  141

seq1  ATGCCTCTGAATGGTGAGCTTTTGTCCGAGGATTCTCCTCTCTCCCTTCT  197
      ||||||||||||||||||| ||||||||||||||||||||||||| ||||
seq2  ATGCCTCTGAATGGTGAGC-TTTGTCCGAGGATTCTCCTCTCTCCTTTCT  190

seq1  TTCTTATATTTAATGGCTGAGCCATCTCTCCAGCCCTCTCCCTTCTTTCT  247
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATATTAAATGGCTGAGCCATCTCTCCAGCCCTCTCCCTTCTTTCT  240

seq1  TGAGGTGTGAAGCATTCACCATTATAGCCCCTTACCACTCTGGTGTTCTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTGTGAAGCATTCACCATTATAGCCCCTTACCACTCTGGTGTTCTG  290

seq1  CTCTGCCTCTGCTCC-AAAGCATGAAGCAAGCCGACCCTTGATCAAAACC  346
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTCTGCTCCAAAAGCATGAAGCAAGCCGACCCTTGATCAAAACC  340

seq1  TTTGAAGTCGTGAGTCCAAACAAACCTTTCTCAGGTGAGTTTTTCTAAGG  396
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTTGAAGTCGTGAGTCCAAAC-AACCTTTCTCAGGTGAGTTTTTCTAAGG  389

seq1  TAGTTTGTCCTAGCCATGGAAAGTAAGCACCCGCAGCCATGATGCTATCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTGTCCTAGCCATGGAAAGTAAGCACCCGCAGCCATGATGCTATCA  439

seq1  GATACAACAGCAAAAACAGTATGTGTGTGCGCGCATTTAGTTCAGCCTCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAACAGCAAAAACAGTATGTGTGTGCGCGCATTTAGTTCAGCCTCC  489

seq1  CAACGGCTGAGGGACGAGGGAGTAATCAGGTTAGAGAGATGGATAAGGCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGGCTGAGGGACGAGGGAGTAATCAGGTTAGAGAGATGGATAAGGCT  539

seq1  TGCTACCAAACCTGACAACCTGAGTGGATTTTAATCCAGGTGATGGAAAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACCAAACCTGACAACCTGAGTGGATTTTAATCCAGGTGATGGAAAG  589

seq1  AGAGAATTGACTCCCCCAAATTGTCCTGTGACCTCAACATGTGTGCTGTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATTGACTCCCCCAAATTGTCCTGTGACCTCAACATGTGTGCTGTG  639

seq1  ACATACACCCCCAACTCCCTCACACTTATGCAATATAAGCGAAATAAATG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACACCCCCAACTCCCTCACACTTATGCAATATAAGCGAAATAAATG  689

seq1  CAATGATAAAGTAGAGTCAATAAAATCTATAGCCACAAAGAAGTATTAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGATAAAGTAGAGTCAATAAAATCTATAGCCACAAAGAAGTATTAAA  739

seq1  GGGCTGCTGAGTGAGAGAGAATCAGCAACAAGAAACCAAACCTTCTTTCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGCTGAGTGAGAGAGAATCAGCAACAAGAAACCAAACCTTCTTTCT  789

seq1  AAAAAAATATTATGATTTATCTATTTTATGCACATGGGTGCTTTATCTGC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATATTATGATTTATCTATTTTATGCACATGGGTGCTTTATCTGC  839

seq1  ATGTATGTCCATGCACAATATACATGTCTGATGCCCAGGGAGGTCAGGAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGTCCATGCACAATATACATGTCTGATGCCCAGGGAGGTCAGGAA  889

seq1  AGGGTGTCAGATCCCCGGGGACTGGAGTTTTAAATGGTTTTAAGGAGCCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGTCAGATCCCCGGGGACTGGAGTTTTAAATGGTTTTAAGGAGCCA  939

seq1  TGCTGGTGCTGGGAATCAAACCTGGGTCTTCTGCGACAGAGTCTGTGCTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGTGCTGGGAATCAAACCTGGGTCTTCTGCGACAGAGTCTGTGCTC  989

seq1  TAACCACCAAGCTGCCGCTCCAGCCCCGTAACTCTTTGCAAGATCCAGCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCACCAAGCTGCCGCTCCAGCCCCGTAACTCTTTGCAAGATCCAGCT  1039

seq1  GAAGCTCCTCTGATCAGACTAATTCCAGCTCACGACGACGACTTTCCACC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTCCTCTGATCAGACTAATTCCAGCTCACGACGACGACTTTCCACC  1089

seq1  TCTGAATTC  1105
      |||||||||
seq2  TCTGAATTC  1098


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