BAC Information

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BAC

Clone NameB6Ng01-252A23
Chromosome13 (Build37)9 (Build37)
Map Location 17,554,269 - 17,554,78410,620,138 - 10,621,271
singlet/doubletsingletsinglet
Overlap gene5033411D12Rik
Upstream geneLOC665191
Downstream gene2810021B07Rik, Cdc2l5, Rala, LOC434585, LOC382732, 1600012F09Rik, Vdac3-ps1, LOC625310, 4930448F12Rik, Pou6f2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-252A23.bB6Ng01-252A23.g
ACCGA059161GA059162
length1,0021,119
definitionB6Ng01-252A23.b B6Ng01-252A23.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(17,554,269 - 17,554,784)(10,620,138 - 10,621,271)
sequence
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
taaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatatagtggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtactttctacttctatcttgtgaaaaagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactatttataactgcttctatttct
ttaggggatatgggactgtttagaagatcaacctgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcagttctgattttgttaat
taggattttgtctctgtgccctctagtgagtctagctaagggttttatct
atcttgttgatttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccacttggttgatttcacccctgagtttgattat
ttcctgccgtctactcctcttgggtgaatttgcttccttttttctagagc
tttagatgtgttgtcaagctgctagtatgtgctgtctccgtttctttctt
ggaggcactcagagctatgaagtttccttcttagaaatgccttcatttgt
gt

gaattcaataaagtcccctttagttattacatctaaatcctcaagggtga
agacagttcaatgaaataattttttttccttcacattggcataagaaata
gaaaatgggccatagctgtagaaaaaataatggaaaagaaagattttttt
tgatgagtgtcactgtttaattgaagatttagtgtttgctggtgaattat
ataatgtttataataaataaaaacaatttatggccaagatagtgcaatct
aggattgcctttacaactacaaaggtaatatatccctaataagattggga
agaaggcattaggagcaggtgagagatggaattataggaactcacagttg
ttacatggtgaagatggcaaaataataatgctgtggagtcatgtgatgtc
ctggggtatattaagccatgggacacaggagcttaagtcacaagaaagct
gagttgccttgagataacacgtttgaagtcttcattggtgcaacctaaaa
gccaggaaaacaatttgaatggatacagaatatagaagaattaatgtgcc
ctgcaggttacagggaaaaggagatgtgtcagatgggccaaagacagaac
agccgcacaacctgaaggatgatggtagaggggtcttctagctatagtac
tggagaaggagaaagagaagagccatgcctgctctagatctgctgaggtg
aaaactcagaatttacattgattatatcttgatattaagattactgtcag
ggaggggacagtaagagcaaataggaggagtgaagagaaaaagtagagag
acttctatccaaaataataataattattattccgtactaatgatcgtggt
tataatgtctatttttgaataaaatgaggatcaattacctacttctattg
ttcaatatgttcaagactacaaatataaatgtatcaaaaatgtctttggg
ctgaacattctgtatttaagtaagtgctcgacttgcttctgctttactgg
aagtcgtctgcagtttggctttcctataatatgatatcacaaaatcctct
actagaggtgtgtatagaaacacttgggccttgaagatttgaccatagcc
ttcatagtctaatgtggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_17554269_17554784
seq2: B6Ng01-252A23.b_531_1047 (reverse)

seq1  ACAC-AATGAAGGCATTTCTAAG-AGGAAAACTCATAGCCCTGAGTGCCT  48
      |||| |||||||||||||||||| ||||||  ||||||| ||||||||||
seq2  ACACAAATGAAGGCATTTCTAAGAAGGAAACTTCATAGCTCTGAGTGCCT  50

seq1  CCAA-AAATAAACTAGAGAGAGCACACACTAGCAGCTTGACAACACACCT  97
      |||| ||| ||||  |||| |||||| |||||||||||||||||||| ||
seq2  CCAAGAAAGAAAC-GGAGACAGCACATACTAGCAGCTTGACAACACATCT  99

seq1  AAAAGCTCTAGAACAAAAGAAAGCAAATTCACCCAAGAGGAGTAGAAGGC  147
       |||||||||||| ||||| |||||||||||||||||||||||||| |||
seq2  -AAAGCTCTAGAA-AAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGC  147

seq1  AGGAAATAA-AAAACTCAGGGGCGAAATCAACCAAGTGGAAACAAGAAGA  196
      |||||||||  ||||||||||| |||||||||||||||||||||||||||
seq2  AGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGA  197

seq1  ACTATTCAAAGAATCAACCAAATGAGGAGCTGATTCTTTGAGAAAATCAA  246
      |||||||||||||| ||||||| |||||| || ||||||||| |||||||
seq2  ACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAG-AAATCAA  246

seq1  CAAGATAGA-CAAACCCTTAGCCAGACTCAATAGAGGGCACAGGAAAAGC  295
      |||||||||  ||||||||||| ||||||| ||||||||||||  | |  
seq2  CAAGATAGATAAAACCCTTAGCTAGACTCACTAGAGGGCACAGAGACAAA  296

seq1  ATTCTAATTAACAAAATCAGAAATGAAAAGGCAGACATAACAACAAATCC  345
      || ||||||||||||||||||| |||||||| ||||||||||||| ||||
seq2  ATCCTAATTAACAAAATCAGAACTGAAAAGGGAGACATAACAACAGATCC  346

seq1  TGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAA  396

seq1  CAAAACTGGAAAACCTGGACGAAATGGACAAGTTTCTAGACAGATACCAG  445
      ||||||||||||||||||||||||||||||| ||||| ||||||||||||
seq2  CAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAG  446

seq1  GTACCAAAGTTAAATAAAGATCAGGTTAATGATCTAAACAGTCCTATATC  495
      ||||||||||| ||| | ||||||||| ||  |||||||||||| |||||
seq2  GTACCAAAGTTGAATCAGGATCAGGTTGATCTTCTAAACAGTCCCATATC  496

seq1  TCCTAAAGAAATAGAAGCAGT  516
       ||||||||||||||||||||
seq2  CCCTAAAGAAATAGAAGCAGT  517


seq1: chr9_10620138_10621271
seq2: B6Ng01-252A23.g_68_1186 (reverse)

seq1  ATCCACA-TAGACTATTGAAGGCTATGGTCAAATCTTTCAAAGGCCCCAA  49
      ||||||| ||||||| ||||||||||||||||||| |||||  | |||||
seq2  ATCCACATTAGACTA-TGAAGGCTATGGTCAAATC-TTCAA--GGCCCAA  46

seq1  GTGTTCTAATACACACCTCTAGTAAGAGGGATTTGGTGGATTATTCATTA  99
      |||||   ||||||||||||||| ||| |||||| |||    ||  || |
seq2  GTGTTTCTATACACACCTCTAGT-AGA-GGATTTTGTG----AT--ATCA  88

seq1  TTTAATAGGAAAGCCAAACTGCAGACGACTTCCAGTAAAAGCAGAAGCAA  149
      | | |||||||||||||||||||||||||||||||| |||||||||||||
seq2  TATTATAGGAAAGCCAAACTGCAGACGACTTCCAGT-AAAGCAGAAGCAA  137

seq1  GTCGAGCACCTTACTTAAAATACAGAATGTTCAGCCCAAAGACATTTTTG  199
      |||||||| ||||||| |||||||||||||||||||||||||||||||||
seq2  GTCGAGCA-CTTACTT-AAATACAGAATGTTCAGCCCAAAGACATTTTTG  185

seq1  ATACATTTATATTTTGTAGTCTTGAACATATTGAACAATAGAAGTAGGTA  249
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATACATTTATA-TTTGTAGTCTTGAACATATTGAACAATAGAAGTAGGTA  234

seq1  ATTGATCCTCATTTTATTCAAAAATAGACATTATAACCACGATCATTAGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATCCTCATTTTATTCAAAAATAGACATTATAACCACGATCATTAGT  284

seq1  ACGGAATAATAATTATTATTATTTTGGATAGAAGTCTCTCTACTTTTTCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAATAATAATTATTATTATTTTGGATAGAAGTCTCTCTACTTTTTCT  334

seq1  CTTCACTCCTCCTATTTGCTCTTACTGTCCCCTCCCTGACAGTAATCTTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACTCCTCCTATTTGCTCTTACTGTCCCCTCCCTGACAGTAATCTTA  384

seq1  ATATCAAGATATAATCAATGTAAATTCTGAGTTTTCACCTCAGCAGATCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAAGATATAATCAATGTAAATTCTGAGTTTTCACCTCAGCAGATCT  434

seq1  AGAGCAGGCATGGCTCTTCTCTTTCTCCTTCTCCAGTACTATAGCTAGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGGCATGGCTCTTCTCTTTCTCCTTCTCCAGTACTATAGCTAGAA  484

seq1  GACCCCTCTACCATCATCCTTCAGGTTGTGCGGCTGTTCTGTCTTTGGCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCTCTACCATCATCCTTCAGGTTGTGCGGCTGTTCTGTCTTTGGCC  534

seq1  CATCTGACACATCTCCTTTTCCCTGTAACCTGCAGGGCACATTAATTCTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGACACATCTCCTTTTCCCTGTAACCTGCAGGGCACATTAATTCTT  584

seq1  CTATATTCTGTATCCATTCAAATTGTTTTCCTGGCTTTTAGGTTGCACCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATTCTGTATCCATTCAAATTGTTTTCCTGGCTTTTAGGTTGCACCA  634

seq1  ATGAAGACTTCAAACGTGTTATCTCAAGGCAACTCAGCTTTCTTGTGACT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGACTTCAAACGTGTTATCTCAAGGCAACTCAGCTTTCTTGTGACT  684

seq1  TAAGCTCCTGTGTCCCATGGCTTAATATACCCCAGGACATCACATGACTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTCCTGTGTCCCATGGCTTAATATACCCCAGGACATCACATGACTC  734

seq1  CACAGCATTATTATTTTGCCATCTTCACCATGTAACAACTGTGAGTTCCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCATTATTATTTTGCCATCTTCACCATGTAACAACTGTGAGTTCCT  784

seq1  ATAATTCCATCTCTCACCTGCTCCTAATGCCTTCTTCCCAATCTTATTAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTCCATCTCTCACCTGCTCCTAATGCCTTCTTCCCAATCTTATTAG  834

seq1  GGATATATTACCTTTGTAGTTGTAAAGGCAATCCTAGATTGCACTATCTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATATTACCTTTGTAGTTGTAAAGGCAATCCTAGATTGCACTATCTT  884

seq1  GGCCATAAATTGTTTTTATTTATTATAAACATTATATAATTCACCAGCAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATAAATTGTTTTTATTTATTATAAACATTATATAATTCACCAGCAA  934

seq1  ACACTAAATCTTCAATTAAACAGTGACACTCATCAAAAAAAATCTTTCTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAAATCTTCAATTAAACAGTGACACTCATCAAAAAAAATCTTTCTT  984

seq1  TTCCATTATTTTTTCTACAGCTATGGCCCATTTTCTATTTCTTATGCCAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTATTTTTTCTACAGCTATGGCCCATTTTCTATTTCTTATGCCAA  1034

seq1  TGTGAAGGAAAAAAAATTATTTCATTGAACTGTCTTCACCCTTGAGGATT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGGAAAAAAAATTATTTCATTGAACTGTCTTCACCCTTGAGGATT  1084

seq1  TAGATGTAATAACTAAAGGGGACTTTATTGAATTC  1134
      |||||||||||||||||||||||||||||||||||
seq2  TAGATGTAATAACTAAAGGGGACTTTATTGAATTC  1119


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