BAC Information

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BAC

Clone NameB6Ng01-252C11
Chromosome13 (Build37)
Map Location 5,791,496 - 5,916,365
singlet/doubletdoublet
Overlap gene1700016G22Rik, Klf6
Upstream geneEG432723
Downstream geneLOC100039388, LOC100039395, Pitrm1, Pfkp, LOC100039532
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-252C11.bB6Ng01-252C11.g
ACCGA059229GA059230
length1,1061,069
definitionB6Ng01-252C11.b B6Ng01-252C11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,915,228 - 5,916,365)(5,791,496 - 5,792,482)
sequence
gaattcatcatttacttttgcttaaatagtcttataagaaaacattcacc
atatgtgtgccccacccctgaattcacatgcacattctgctaccctaatg
ggttaaattactcttcattactatctttatttccaagattcatgtaggtt
ctctgacccatttctttctaatgtatatttttaaaaacaattatgaatat
ttcaggagaattccctttcaattttgagtataattgtatcacacttgcga
ctaataccaaagacaattgtgtctttatcataattactcttaatagggct
atttgtttcccacctcatgattgctggaaaagccctctggatctgcatat
cctccatgtagcttgcttactttggttaagttataaataatcatagacac
agtcttggagtgtgaagtgagtgttttgtattctgtacctctcctacatc
atgaggcaatattattgttccatgcaggttttttttttcaaatgctggaa
tcattactaaaggaatattcattccatgcatccgggattgtcccattatc
taacagacgttatggcagaaggtcttataaatttcacagaccagacatta
tcataacacaatcaataaacaaaacatgataattactagatgagataaga
taactgcctagtaaaattttatttgaaactaaaaattcagcagtaaaatg
aacaaggatctcctagggatattgtgtatcttaaattcctttggagagaa
taactacagaaaagtgactgaagagagtcctcttaacagaaattagagca
caaaagacactgccctcgaaagcaagggagttccatttatcttaactttt
cacgactaaagggcgttggttcttttcccttttgcacctagactgaatga
aggagtgagcctttcagaaagtgaatatctaaaagctatctagatatttt
cactaatagaaagcattttacatgtgggaaatattcattatctataactg
ggaagctctactagtccacattctatagacagattccactcaattagaca
tcaggaaaaaaatatctaaagggtttcgattacttggccattagatcccc
cacccc

gaattcactgccccacctagggatccatcccatatacagtcaccaaaccc
agatggtattgtggatgccgggaagtgcttgcatatctagaagcctgata
tggctgtctgctgagaggctttgccagagcctgacaaatacagaggagaa
agctcacagccaatcatgggactgaactcaagggtccctgatggaagaga
tggaaaagtgactgaagaagctgagggagtttggcagccccatggaggga
gcaacagtgtcaacaggccagacccccagagttcccagggactcgaccac
caaccaaagaatacacatggagcgacccatagcgctggtcacatatgtgg
cagaggatggccttgttggacatcagtgggagcagaggccctcaagccta
agggtgttcaatgccccagtgtgaggtaatgccagggcaggaggatgggc
atgggtgggtttgggagaaccctcacagaggcagggggagggtggatcgt
atgggggtttccaaaatggagaccgggaaaggggcaaacattggaaatgt
aaataaggaaaatattcaaggaaaaaaaagacaattaaaataaatatgtg
agttgattttatttaaaaaaaaatgttccaagaagagtgggcatgggtgt
gtgtgcgaatgaatgttcaacaaaattacagagtattgcaaatgggcggg
ggggcgatgtcagtcatctcacatccaaaactgtatcccaggaaatagca
tgaaggcagatcgcagcgcctgtgtacatccaaaatttctttttcttgtt
tttaattggatgataatgcaatcacatacttgaaagctcatcaaaagcct
acagcttaggacagtcgtgggtccagaacatattgcctttgttttcctag
atgggcatgttgtcaaactgccatgtaacttattgatgttcatacccata
gactgtccactctcatttcctagaacaaagaagttcttttggcagagagc
agtattaatactgagctcttatattggtcaaagagttgaagaataaatgg
catctactcaatgtaaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_5915228_5916365
seq2: B6Ng01-252C11.b_46_1151 (reverse)

seq1  GGGGTGGGGGTTGGGGGTTGGGGGGGAATCTAAATGGCAAAGTTAATCTG  50
                    ||| ||||||   |||| |||||| ||| ||||| |
seq2  --------------GGGGTGGGGG---ATCT-AATGGCCAAG-TAATC-G  30

seq1  AAACCCTTTAGATATTTTTTTCCCCTTGATTGTCTAATTGAGTGGATTCT  100
      |||||||||||||||||||||||   ||| |||||||||||||||| |||
seq2  AAACCCTTTAGATATTTTTTTCC---TGA-TGTCTAATTGAGTGGAATCT  76

seq1  GGTTCTAATAGAATGTGGACTTAGTAGAGCTTCCCAGTTATAGATAATGA  150
      |  ||| ||||||||||||| |||||||||||||||||||||||||||||
seq2  G--TCT-ATAGAATGTGGAC-TAGTAGAGCTTCCCAGTTATAGATAATGA  122

seq1  ATATTTCCCACAATGTAAAATGCTTTCTATTTTAGTGAAAATATCTAGAT  200
      ||||||||||| |||||||||||||||||  |||||||||||||||||||
seq2  ATATTTCCCAC-ATGTAAAATGCTTTCTA--TTAGTGAAAATATCTAGAT  169

seq1  AGCTTTTAGATATTCACTTTCCTGAAAGGCTCACTCCTTCATTCAGTCTA  250
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGCTTTTAGATATTCACTTT-CTGAAAGGCTCACTCCTTCATTCAGTCTA  218

seq1  GGTGCAAAAGGGAAAAGAACCAACGCCCTTTAGTCGTGAAAAGTTAAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCAAAAGGGAAAAGAACCAACGCCCTTTAGTCGTGAAAAGTTAAGAT  268

seq1  AAATGGAACTCCCTTGCTTTCGAGGGCAGTGTCTTTTGTGCTCTAATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGAACTCCCTTGCTTTCGAGGGCAGTGTCTTTTGTGCTCTAATTTC  318

seq1  TGTTAAGAGGACTCTCTTCAGTCACTTTTCTGTAGTTATTCTCTCCAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAGAGGACTCTCTTCAGTCACTTTTCTGTAGTTATTCTCTCCAAAG  368

seq1  GAATTTAAGATACACAATATCCCTAGGAGATCCTTGTTCATTTTACTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTAAGATACACAATATCCCTAGGAGATCCTTGTTCATTTTACTGCT  418

seq1  GAATTTTTAGTTTCAAATAAAATTTTACTAGGCAGTTATCTTATCTCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTTAGTTTCAAATAAAATTTTACTAGGCAGTTATCTTATCTCATC  468

seq1  TAGTAATTATCATGTTTTGTTTATTGATTGTGTTATGATAATGTCTGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAATTATCATGTTTTGTTTATTGATTGTGTTATGATAATGTCTGGTC  518

seq1  TGTGAAATTTATAAGACCTTCTGCCATAACGTCTGTTAGATAATGGGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAATTTATAAGACCTTCTGCCATAACGTCTGTTAGATAATGGGACA  568

seq1  ATCCCGGATGCATGGAATGAATATTCCTTTAGTAATGATTCCAGCATTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCGGATGCATGGAATGAATATTCCTTTAGTAATGATTCCAGCATTTG  618

seq1  AAAAAAAAAACCTGCATGGAACAATAATATTGCCTCATGATGTAGGAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAACCTGCATGGAACAATAATATTGCCTCATGATGTAGGAGAG  668

seq1  GTACAGAATACAAAACACTCACTTCACACTCCAAGACTGTGTCTATGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGAATACAAAACACTCACTTCACACTCCAAGACTGTGTCTATGATT  718

seq1  ATTTATAACTTAACCAAAGTAAGCAAGCTACATGGAGGATATGCAGATCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAACTTAACCAAAGTAAGCAAGCTACATGGAGGATATGCAGATCC  768

seq1  AGAGGGCTTTTCCAGCAATCATGAGGTGGGAAACAAATAGCCCTATTAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGCTTTTCCAGCAATCATGAGGTGGGAAACAAATAGCCCTATTAAG  818

seq1  AGTAATTATGATAAAGACACAATTGTCTTTGGTATTAGTCGCAAGTGTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATTATGATAAAGACACAATTGTCTTTGGTATTAGTCGCAAGTGTGA  868

seq1  TACAATTATACTCAAAATTGAAAGGGAATTCTCCTGAAATATTCATAATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTATACTCAAAATTGAAAGGGAATTCTCCTGAAATATTCATAATT  918

seq1  GTTTTTAAAAATATACATTAGAAAGAAATGGGTCAGAGAACCTACATGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTAAAAATATACATTAGAAAGAAATGGGTCAGAGAACCTACATGAA  968

seq1  TCTTGGAAATAAAGATAGTAATGAAGAGTAATTTAACCCATTAGGGTAGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGAAATAAAGATAGTAATGAAGAGTAATTTAACCCATTAGGGTAGC  1018

seq1  AGAATGTGCATGTGAATTCAGGGGTGGGGCACACATATGGTGAATGTTTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTGCATGTGAATTCAGGGGTGGGGCACACATATGGTGAATGTTTT  1068

seq1  CTTATAAGACTATTTAAGCAAAAGTAAATGATGAATTC  1138
      ||||||||||||||||||||||||||||||||||||||
seq2  CTTATAAGACTATTTAAGCAAAAGTAAATGATGAATTC  1106


seq1: chr13_5791496_5792482
seq2: B6Ng01-252C11.g_152_1136

seq1  ATCTAGAAGCCTGATATGGCTGTCTGCTGAGAGGCTTTGCCAGAGCCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGAAGCCTGATATGGCTGTCTGCTGAGAGGCTTTGCCAGAGCCTGA  50

seq1  CAAATACAGAGGAGAAAGCTCACAGCCAATCATGGGACTGAACTCAAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATACAGAGGAGAAAGCTCACAGCCAATCATGGGACTGAACTCAAGGG  100

seq1  TCCCTGATGGAAGAGATGGAAAAGTGACTGAAGAAGCTGAGGGAGTTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGATGGAAGAGATGGAAAAGTGACTGAAGAAGCTGAGGGAGTTTGG  150

seq1  CAGCCCCATGGAGGGAGCAACAGTGTCAACAGGCCAGACCCCCAGAGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCATGGAGGGAGCAACAGTGTCAACAGGCCAGACCCCCAGAGTTC  200

seq1  CCAGGGACTCGACCACCAACCAAAGAATACACATGGAGCGACCCATAGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGACTCGACCACCAACCAAAGAATACACATGGAGCGACCCATAGCG  250

seq1  CTGGTCACATATGTGGCAGAGGATGGCCTTGTTGGACATCAGTGGGAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCACATATGTGGCAGAGGATGGCCTTGTTGGACATCAGTGGGAGCA  300

seq1  GAGGCCCTCAAGCCTAAGGGTGTTCAATGCCCCAGTGTGAGGTAATGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCCTCAAGCCTAAGGGTGTTCAATGCCCCAGTGTGAGGTAATGCCA  350

seq1  GGGCAGGAGGATGGGCATGGGTGGGTTTGGGAGAACCCTCACAGAGGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGAGGATGGGCATGGGTGGGTTTGGGAGAACCCTCACAGAGGCAG  400

seq1  GGGGAGGGTGGATCGTATGGGGGTTTCCAAAATGGAGACCGGGAAAGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGGTGGATCGTATGGGGGTTTCCAAAATGGAGACCGGGAAAGGGG  450

seq1  CAAACATTGGAAATGTAAATAAGGAAAATATTCAAGGAAAAAAAAGACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATTGGAAATGTAAATAAGGAAAATATTCAAGGAAAAAAAAGACAA  500

seq1  TTAAAATAAATATGTGAGTTGATTTTATTTAAAAAAAAATGTTCCAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATAAATATGTGAGTTGATTTTATTTAAAAAAAAATGTTCCAAGAA  550

seq1  GAGTGGGCATGGGTGTGTGTGCGAATGAATGTTCAACAAAATTACAGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGGCATGGGTGTGTGTGCGAATGAATGTTCAACAAAATTACAGAGT  600

seq1  ATTGCAAATGGGCGGGGGGGCGATGTCAGTCATCTCACATCCAAAACTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAAATGGGCGGGGGGGCGATGTCAGTCATCTCACATCCAAAACTGT  650

seq1  ATCCCAGGAAATAGCATGAAGGCAGATCGCAGCGCCTGTGTACATCCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGGAAATAGCATGAAGGCAGATCGCAGCGCCTGTGTACATCCAAA  700

seq1  ATTTCTTTTTCTTGTTTTTAATTGGATGATAAATGCAATCACATACTTGA  750
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATTTCTTTTTCTTGTTTTTAATTGGATGAT-AATGCAATCACATACTTGA  749

seq1  AAGCTCATCAAAAGCCTACAGC-TAGGACAGTCGTGGGTCCAAGAACATA  799
      |||||||||||||||||||||| |||||||||||||||||| ||||||||
seq2  AAGCTCATCAAAAGCCTACAGCTTAGGACAGTCGTGGGTCC-AGAACATA  798

seq1  TTGCCTTTGTTTTCCTAGATGGGCATGTTGTCAAACTGCCATGTAAC-TA  848
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTGCCTTTGTTTTCCTAGATGGGCATGTTGTCAAACTGCCATGTAACTTA  848

seq1  TTGATGTTCATACCCATAGACTGTCCACTCTCATT--CTAGAACAAAGAA  896
      |||||||||||||||||||||||||||||||||||  |||||||||||||
seq2  TTGATGTTCATACCCATAGACTGTCCACTCTCATTTCCTAGAACAAAGAA  898

seq1  GTTCCTTTTTGCAGAGAGCAGTAATTAATACTGAGGCTTTTATA-TGGTC  945
      ||| ||||| |||||||||||| ||||||||||| ||| ||||| |||||
seq2  GTT-CTTTTGGCAGAGAGCAGT-ATTAATACTGA-GCTCTTATATTGGTC  945

seq1  AAAGAGTTG-AGAATAAATGGCATCTAGCTCATATGTACACCC  987
      ||||||||| ||||||||||||||||| |||| ||||| ||||
seq2  AAAGAGTTGAAGAATAAATGGCATCTA-CTCA-ATGTA-ACCC  985


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