BAC Information

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BAC

Clone NameB6Ng01-252E17
Chromosome13 (Build37)
Map Location 110,498,328 - 110,642,091
singlet/doubletdoublet
Overlap genePde4d
Upstream geneLOC621663, LOC100040968
Downstream geneLOC100040577, Rab3c, EG432803, 9830130M13Rik, Plk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-252E17.bB6Ng01-252E17.g
ACCGA059329GA059330
length1,1631,100
definitionB6Ng01-252E17.b B6Ng01-252E17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,498,328 - 110,499,494)(110,640,978 - 110,642,091)
sequence
gaattctagactagagttattctattgagtggctggagtgttgctcagtt
agtccttggcatattttcctgtagatcatttttggcatggcattccctcg
gatgtggaagtgtgctctgtataagtgcttctcttcctaagcaccatcta
caattcctcagaatgaaggtgaaagttacaggcataggaagggtggtggc
cagatgcttaggaatctgtgatgggagaacctcagactcaggatttgaat
ttgtgggatttctactatgggcattaatttcttttttagttggtaagatg
actcaccagtatgggaagggacaatgtttttctggccctctctgacaagg
gctcagtctggagccttattaacctggactccttttcagtcagacacttg
gcactgcacagtccgtctccttgccatctgcccgggctgacattattttt
agttgctagagcaaaagtttattggctgatttcctatctttacaagccaa
ggtatcatttcaaaagcacatattgtttaattcttacactgaaataatgt
ttcttaactcttctgctccaatcagtctgcctgatttaaaggtttaaaaa
gaagcaacctagttcaatacacaattgatagccagcattggacaaacatg
aagagacggtgaagtgagccagagcagagaagtgtgctggtgtgtctggg
gtcccgtggtcctcttctgtccttcttaagaactgctagtaactattggt
aaagcatcagagatgtctctgtggtcactcacagcagtgaaagataatta
gctgtcatagcttggtatttttctattttcctaaggaaaaacctaaagta
actgtaaaacacaccaggagattccgacgtctgctttttggctaaattcc
tctatcaacagtgaaaggagccaaattgcatttctttttgatgtatgctt
tcctagactcatgcattagttcataagcatttgttaattgaaccgtttat
gagtcacaccacacagttgatggatgcgttcttgcactgtacatgggagc
aacatgatttctaggtacaaacatactcattacgtctcatattcacaagc
cagtgcctttcagaatatttaaccaaggtttgactttgggttcattaaca
tgatgaattgaaa
gaattctccttcgcctcggacgtgtcactccttgattggctgcagcccat
cggccgagttgacgtcacggggaaggcagagcacatggagtgaagaacca
ccctcggcacatgcgcagattatttgtttaccacttagaacacagctgtc
agcgccatcttgtaacggcgaatgtgggcgcggctcccaacagttcctca
catgaaagtggaatgaattttaaggtatcctatttatttctgagtcttat
tttctgagcttcatgcaaagaataagttcaagcactatttttttaaaaat
ccattaaaaatgtgaaggttgttaaaattgctttctagcgtctgaagcaa
gagttctgcatgagatgagacactggcgctgaatgttcagacagcagcta
accaaggtagccctcacatctcacggctaaacctgggggggagattagga
aggccagtgggaaggaagcgggcatcaggactaggaattgaggcactaat
ataaattagttcttgtcagctcaagaacactaacaattactcaggggatt
agcagagtcaaaagttttgggaaagaataattttagctttaataagactc
actagaacggtgtgtgaacgcctatgtaattttgttgtgtatctttttct
taataaaaagaaactaggtgttctagctggtgtttattaggaatcgtgtg
gaggatagtgctcatgtttcataaacgtcgacaccctatcgagggcattt
gatttgacattagcataggagctagaacagaacctacgttctgttccaag
atctgtgccttgtctgtacagatgtggtcacatcctcacagggagatctg
tctcctcttgtgatgagaacatcagtgcacgtgcctcttgatctccaagg
gattttctgaagtttagtggtgcaaaatctgcaaggttctttggactctt
taaagacaaggaggcatgaaaatactcttcttctgttcttgtgcacaggt
gcagttgagaggaacttatcctgagggcagtgccatagtgtaaacagtag
ctgaacacagtgatactgagtctagctagttgcctccgtataggttcttg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_110498328_110499494
seq2: B6Ng01-252E17.b_46_1208

seq1  GAATTCTAGACTAGAGTTATTCTATTGAGTGGCTGGAGTGTTGCTCAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGACTAGAGTTATTCTATTGAGTGGCTGGAGTGTTGCTCAGTT  50

seq1  AGTCCTTGGCATATTTTCCTGTAGATCATTTTTGGCATGGCATTCCCTCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTTGGCATATTTTCCTGTAGATCATTTTTGGCATGGCATTCCCTCG  100

seq1  GATGTGGAAGTGTGCTCTGTATAAGTGCTTCTCTTCCTAAGCACCATCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGAAGTGTGCTCTGTATAAGTGCTTCTCTTCCTAAGCACCATCTA  150

seq1  CAATTCCTCAGAATGAAGGTGAAAGTTACAGGCATAGGAAGGGTGGTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCCTCAGAATGAAGGTGAAAGTTACAGGCATAGGAAGGGTGGTGGC  200

seq1  CAGATGCTTAGGAATCTGTGATGGGAGAACCTCAGACTCAGGATTTGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGCTTAGGAATCTGTGATGGGAGAACCTCAGACTCAGGATTTGAAT  250

seq1  TTGTGGGATTTCTACTATGGGCATTAATTTCTTTTTTAGTTGGTAAGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGGATTTCTACTATGGGCATTAATTTCTTTTTTAGTTGGTAAGATG  300

seq1  ACTCACCAGTATGGGAAGGGACAATGTTTTTCTGGCCCTCTCTGACAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACCAGTATGGGAAGGGACAATGTTTTTCTGGCCCTCTCTGACAAGG  350

seq1  GCTCAGTCTGGAGCCTTATTAACCTGGACTCCTTTTCAGTCAGACACTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTCTGGAGCCTTATTAACCTGGACTCCTTTTCAGTCAGACACTTG  400

seq1  GCACTGCACAGTCCGTCTCCTTGCCATCTGCCCGGGCTGACATTATTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGCACAGTCCGTCTCCTTGCCATCTGCCCGGGCTGACATTATTTTT  450

seq1  AGTTGCTAGAGCAAAAGTTTATTGGCTGATTTCCTATCTTTACAAGCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCTAGAGCAAAAGTTTATTGGCTGATTTCCTATCTTTACAAGCCAA  500

seq1  GGTATCATTTCAAAAGCACATATTGTTTAATTCTTACACTGAAATAATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCATTTCAAAAGCACATATTGTTTAATTCTTACACTGAAATAATGT  550

seq1  TTCTTAACTCTTCTGCTCCAATCAGTCTGCCTGATTTAAAGGTTTAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAACTCTTCTGCTCCAATCAGTCTGCCTGATTTAAAGGTTTAAAAA  600

seq1  GAAGCAACCTAGTTCAATACACAATTGATAGCCAGCATTGGACAAACATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAACCTAGTTCAATACACAATTGATAGCCAGCATTGGACAAACATG  650

seq1  AAGAGACGGTGAAGTGAGCCAGAGCAGAGAAGTGTGCTGGTGTGTCTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACGGTGAAGTGAGCCAGAGCAGAGAAGTGTGCTGGTGTGTCTGGG  700

seq1  GTCCCGTGGTCCTCTTCTGTCCTTCTTAAGAACTGCTAGTAACTATTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCGTGGTCCTCTTCTGTCCTTCTTAAGAACTGCTAGTAACTATTGGT  750

seq1  AAAGCATCAGAGATGTCTCTGTGGTCACTCACAGCAGTGAAAGATAATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATCAGAGATGTCTCTGTGGTCACTCACAGCAGTGAAAGATAATTA  800

seq1  GCTGTCATAGCTTGGTATTTTTCTATTTTCCTAAGGAAAAACCTAAAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCATAGCTTGGTATTTTTCTATTTTCCTAAGGAAAAACCTAAAGTA  850

seq1  ACTGTAAAACACACCAGGAGATTCCGACGTCTGC-TTTTGGCTAAATTCC  899
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACTGTAAAACACACCAGGAGATTCCGACGTCTGCTTTTTGGCTAAATTCC  900

seq1  TCTATCAACAGTGAAAGGAGCCAAATTGCATTTCTTTTTGATGTATGCTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCAACAGTGAAAGGAGCCAAATTGCATTTCTTTTTGATGTATGCTT  950

seq1  TCCTAGACTCATGCATTAGTTCAATAAGCATTTGTTAATTGAACCGTTTT  999
      |||||||||||||||||||||| ||||||||||||||||||||||| |||
seq2  TCCTAGACTCATGCATTAGTTC-ATAAGCATTTGTTAATTGAACCG-TTT  998

seq1  ATGAGTCCACACCACACAG-TGATGGATGCGTTCTTGCACGGTACATGGG  1048
      |||||| |||||||||||| |||||||||||||||||||| |||||||||
seq2  ATGAGT-CACACCACACAGTTGATGGATGCGTTCTTGCACTGTACATGGG  1047

seq1  AGC-ACATGATTTCTAGGTACAAACATAACTCATTACCGTCTCAATATTC  1097
      ||| ||||||||||||||||||||||| |||||||| |||||| ||||||
seq2  AGCAACATGATTTCTAGGTACAAACAT-ACTCATTA-CGTCTC-ATATTC  1094

seq1  ACAAGCCAAGTGCTTTTCAGATACATTAACCAA-GTTTGACTTT-GGTTC  1145
      ||||||| ||||| |||||||    |||||||| |||||||||| |||||
seq2  ACAAGCC-AGTGCCTTTCAGAATATTTAACCAAGGTTTGACTTTGGGTTC  1143

seq1  ATTTAACATGTATGAATTGAAA  1167
      | |||||||| |||||||||||
seq2  A-TTAACATG-ATGAATTGAAA  1163

seq1: chr13_110640978_110642091
seq2: B6Ng01-252E17.g_65_1164 (reverse)

seq1  CAAGAAACTATACGGGAGGCAAACCTTAGCTTAGACTCAGTATCACTGTT  50
      |||||| |||||| ||||||||    |||| |||||||||||||||||| 
seq2  CAAGAACCTATAC-GGAGGCAA---CTAGC-TAGACTCAGTATCACTGT-  44

seq1  GTTTCAGCTACTGTTTTTACACTATGGCACTGCCCTCAAGGGTTAAGTTT  100
        |||||||||||  |||||||||||||||||||||||  || |||| ||
seq2  -GTTCAGCTACTG--TTTACACTATGGCACTGCCCTCA--GGATAAG-TT  88

seq1  CCTCTCAACTGCACCTGTGCACAAG-ACAGAAG-AGAGTATTTTTCATGC  148
      ||||||||||||||||||||||||| ||||||| |||||| |||||||| 
seq2  CCTCTCAACTGCACCTGTGCACAAGAACAGAAGAAGAGTA-TTTTCATG-  136

seq1  CCTCCCTTTGTCTTTAAAGAGTCCAAAGAACCTTGCAGATTTTGCACCAC  198
      |||||  |||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCC--TTGTCTTTAAAGAGTCCAAAGAACCTTGCAGATTTTGCACCAC  184

seq1  TAAACTTCAGAAAATCCCTTGGAGATCAAGAGGCACGTGCACTGATGTTC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTCAGAAAATCCCTTGGAGATCAAGAGGCACGTGCACTGATGTTC  234

seq1  TCATCACAAGAGGAGACAGATCTCCCTGTGAGGATGTGACCACATCTGTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCACAAGAGGAGACAGATCTCCCTGTGAGGATGTGACCACATCTGTA  284

seq1  CAGACAAGGCACAGATCTTGGAACAGAACGTAGGTTCTGTTCTAGCTCCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAAGGCACAGATCTTGGAACAGAACGTAGGTTCTGTTCTAGCTCCT  334

seq1  ATGCTAATGTCAAATCAAATGCCCTCGATAGGGTGTCGACGTTTATGAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAATGTCAAATCAAATGCCCTCGATAGGGTGTCGACGTTTATGAAA  384

seq1  CATGAGCACTATCCTCCACACGATTCCTAATAAACACCAGCTAGAACACC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGCACTATCCTCCACACGATTCCTAATAAACACCAGCTAGAACACC  434

seq1  TAGTTTCTTTTTATTAAGAAAAAGATACACAACAAAATTACATAGGCGTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTCTTTTTATTAAGAAAAAGATACACAACAAAATTACATAGGCGTT  484

seq1  CACACACCGTTCTAGTGAGTCTTATTAAAGCTAAAATTATTCTTTCCCAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACCGTTCTAGTGAGTCTTATTAAAGCTAAAATTATTCTTTCCCAA  534

seq1  AACTTTTGACTCTGCTAATCCCCTGAGTAATTGTTAGTGTTCTTGAGCTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTGACTCTGCTAATCCCCTGAGTAATTGTTAGTGTTCTTGAGCTG  584

seq1  ACAAGAACTAATTTATATTAGTGCCTCAATTCCTAGTCCTGATGCCCGCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAACTAATTTATATTAGTGCCTCAATTCCTAGTCCTGATGCCCGCT  634

seq1  TCCTTCCCACTGGCCTTCCTAATCTCCCCCCCAGGTTTAGCCGTGAGATG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCCACTGGCCTTCCTAATCTCCCCCCCAGGTTTAGCCGTGAGATG  684

seq1  TGAGGGCTACCTTGGTTAGCTGCTGTCTGAACATTCAGCGCCAGTGTCTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGCTACCTTGGTTAGCTGCTGTCTGAACATTCAGCGCCAGTGTCTC  734

seq1  ATCTCATGCAGAACTCTTGCTTCAGACGCTAGAAAGCAATTTTAACAACC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATGCAGAACTCTTGCTTCAGACGCTAGAAAGCAATTTTAACAACC  784

seq1  TTCACATTTTTAATGGATTTTTAAAAAAATAGTGCTTGAACTTATTCTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATTTTTAATGGATTTTTAAAAAAATAGTGCTTGAACTTATTCTTT  834

seq1  GCATGAAGCTCAGAAAATAAGACTCAGAAATAAATAGGATACCTTAAAAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAAGCTCAGAAAATAAGACTCAGAAATAAATAGGATACCTTAAAAT  884

seq1  TCATTCCACTTTCATGTGAGGAACTGTTGGGAGCCGCGCCCACATTCGCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCACTTTCATGTGAGGAACTGTTGGGAGCCGCGCCCACATTCGCC  934

seq1  GTTACAAGATGGCGCTGACAGCTGTGTTCTAAGTGGTAAACAAATAATCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAAGATGGCGCTGACAGCTGTGTTCTAAGTGGTAAACAAATAATCT  984

seq1  GCGCATGTGCCGAGGGTGGTTCTTCACTCCATGTGCTCTGCCTTCCCCGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCATGTGCCGAGGGTGGTTCTTCACTCCATGTGCTCTGCCTTCCCCGT  1034

seq1  GACGTCAACTCGGCCGATGGGCTGCAGCCAATCAAGGAGTGACACGTCCG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTCAACTCGGCCGATGGGCTGCAGCCAATCAAGGAGTGACACGTCCG  1084

seq1  AGGCGAAGGAGAATTC  1114
      ||||||||||||||||
seq2  AGGCGAAGGAGAATTC  1100