BAC Information

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BAC

Clone NameB6Ng01-253C08
Chromosome13 (Build37)
Map Location 39,031,218 - 39,032,344
singlet/doubletsinglet
Overlap geneSlc35b3
Upstream geneRreb1, Ssr1, Cage1, Riok1, Dsp, 6530403A03Rik, Bmp6, Txndc5, Muted, Eef1e1, LOC621102
Downstream geneEG666867, LOC100041779, LOC382747, A230103O09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253C08.bB6Ng01-253C08.g
ACCGA059958GA059959
length1,1761,115
definitionB6Ng01-253C08.b B6Ng01-253C08.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aaggatggaccatgtagagactgccatagccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacgcagatgtagctgtctcttgtgagactatgccggggcccagcaaac
acagaagtggatgctcacagtcagctaatggatggatcatacggctccca
atggaggagctagagaaagtagccaagagctaagggatctgcaccctata
gtggaacacattatgagctacagtacccggagctctgactctagctgcat
atatatcaaagatgactagtccgcaatcactgaagagaggccatgaactg
ccaacctttatatgcccagtacatggcatccatgccgaagggggaatggg
tggtcatggggcaatgtgcggtcgct
gaattcagttcagacgcttctgtgaggatgtgagatctttttttttaaag
gcatctaaaacaagtgggaagggtgggatgtgtaatatacagaattgggt
tttagcaggaactatttaataaaaattggaaattataaaactagtaagta
acatagatgaaaattttaaaatcttgagttggaaaaggctttgacatgta
gccagaaaccatcaataagaattataaacttccacattgagtataaccca
aagaggaacacaaacagaagaaaaacaatgtcacagaggattttgtaaac
agataaaagattaccgaaattaatgagaaaaatattgatcagttatacaa
tgagctcttagcaatgacaggcttttttctgaccttttttctgaccttcc
acagtattcttatgttcacgtcagtgataaagtagattaaaatgcacatt
aagtctttggcactgtagctatttcataaaaccagcagtgcgccttacag
actcgaggaagtgctggggtcctcaccatctccgagttggaagcattgtg
cagtttcatggccttctcctgaacgttcccaatgacagcgtctgcacaca
gcgccagggagataagcatcacaccttcaaggaataagagagtgatcctc
tttaaacacgcggacgggaagcaaggttggccagaaatctaactgggcta
aacaaaatcaaaagcatgctgtcactcccatttggctggaatgctgccta
ctctgatctgtagcttgctttggtaggcacacagtaatgatattaacata
aaaaagacggacaccaccaaactgattaatgctgccatcaggaccacact
catcacagttctccttttagcaaaggatggtgtgatgggaagaacaagtg
taggagaaaagaaactcttcgatctactgggactgggagctgcacaacga
tcagaaggggaaaagagaaacacccaatattagagaaacacacacacaca
cagtgtctttctaaaatgttccatttaaaagaacacacgggcattgcagt
tcactcctggggccatgctcctgctgtctctaacctgtctctctatagtc
gtactcatgtccgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_39031218_39032344
seq2: B6Ng01-253C08.g_66_1180

seq1  GAATTCAGTTCAGACGCTTCTGTGAGGATGTGAGATCTTTTTTTTTAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCAGACGCTTCTGTGAGGATGTGAGATCTTTTTTTTTAAAG  50

seq1  GCATCTAAAACAAGTGGGAAGGGTGGGATGTGTAATATACAGAATTGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTAAAACAAGTGGGAAGGGTGGGATGTGTAATATACAGAATTGGGT  100

seq1  TTTAGCAGGAACTATTTAATAAAAATTGGAAATTATAAAACTAGTAAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCAGGAACTATTTAATAAAAATTGGAAATTATAAAACTAGTAAGTA  150

seq1  ACATAGATGAAAATTTTAAAATCTTGAGTTGGAAAAGGCTTTGACATGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGATGAAAATTTTAAAATCTTGAGTTGGAAAAGGCTTTGACATGTA  200

seq1  GCCAGAAACCATCAATAAGAATTATAAACTTCCACATTGAGTATAACCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAAACCATCAATAAGAATTATAAACTTCCACATTGAGTATAACCCA  250

seq1  AAGAGGAACACAAACAGAAGAAAAACAATGTCACAGAGGATTTTGTAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAACACAAACAGAAGAAAAACAATGTCACAGAGGATTTTGTAAAC  300

seq1  AGATAAAAGATTACCGAAATTAATGAGAAAAATATTGATCAGTTATACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAAGATTACCGAAATTAATGAGAAAAATATTGATCAGTTATACAA  350

seq1  TGAGCTCTTAGCAATGACAGGCTTTTTTCTGACCTTTTTTCTGACCTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTCTTAGCAATGACAGGCTTTTTTCTGACCTTTTTTCTGACCTTCC  400

seq1  ACAGTATTCTTATGTTCACGTCAGTGATAAAGTAGATTAAAATGCACATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTATTCTTATGTTCACGTCAGTGATAAAGTAGATTAAAATGCACATT  450

seq1  AAGTCTTTGGCACTGTAGCTATTTCATAAAACCAGCAGTGCGCCTTACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTTGGCACTGTAGCTATTTCATAAAACCAGCAGTGCGCCTTACAG  500

seq1  ACTCGAGGAAGTGCTGGGGTCCTCACCATCTCCGAGTTGGAAGCATTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGAGGAAGTGCTGGGGTCCTCACCATCTCCGAGTTGGAAGCATTGTG  550

seq1  CAGTTTCATGGCCTTCTCCTGAACGTTCCCAATGACAGCGTCTGCACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCATGGCCTTCTCCTGAACGTTCCCAATGACAGCGTCTGCACACA  600

seq1  GCGCCAGGGAGATAAGCATCACACCTTCAAGGAATAAGAGAGTGATCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCAGGGAGATAAGCATCACACCTTCAAGGAATAAGAGAGTGATCCTC  650

seq1  TTTAAACACGCGGACGGGAAGCAAGGTTGGCCAGAAATCTAACTGGGCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACACGCGGACGGGAAGCAAGGTTGGCCAGAAATCTAACTGGGCTA  700

seq1  AACAAAATCAAAAGCATGCTGTCACTCCCATTTGGCTGGAATGCTGCCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAATCAAAAGCATGCTGTCACTCCCATTTGGCTGGAATGCTGCCTA  750

seq1  CTCTGATCTGTAGCTTGCTTTGGTAGGCACACAGTAATGATATTAACATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATCTGTAGCTTGCTTTGGTAGGCACACAGTAATGATATTAACATA  800

seq1  AAAAAGACGGACACCACCAAACTGATTAATGCTGCCATCAGGACCACACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGACGGACACCACCAAACTGATTAATGCTGCCATCAGGACCACACT  850

seq1  CATCACAGTTCTCCTTTTAGC-AAGGATGGTGTGAT-GGAAGAACAAGTG  898
      ||||||||||||||||||||| |||||||||||||| |||||||||||||
seq2  CATCACAGTTCTCCTTTTAGCAAAGGATGGTGTGATGGGAAGAACAAGTG  900

seq1  TAGGAG-AAAGAAACTCTTCGATCTACTGGGACTGGGAGCTGCACAAACG  947
      |||||| |||||||||||||||||||||||||||||||||||||| ||||
seq2  TAGGAGAAAAGAAACTCTTCGATCTACTGGGACTGGGAGCTGCAC-AACG  949

seq1  ATCAGAAGGGGAAAAGAGAAACACCCAATATTTAGAGAAAACACACACAC  997
      |||||||||||||||||||||||||||||| |||||| ||||||||||||
seq2  ATCAGAAGGGGAAAAGAGAAACACCCAATA-TTAGAG-AAACACACACAC  997

seq1  ACACAGTGTCTTTCTAAAATGTTCAATTTAAAAGGAACACACGGGCATTT  1047
      |||||||||||||||||||||||| |||||||| ||||||||||||| ||
seq2  ACACAGTGTCTTTCTAAAATGTTCCATTTAAAA-GAACACACGGGCA-TT  1045

seq1  GCCAAGGTCACTTCTGGGGCATGGCTCCTGCCTGGAACTCTACACTGTCT  1097
      ||  || ||||| |||||||   ||||||| |||   |||||  ||||||
seq2  GC--AGTTCACTCCTGGGGCCATGCTCCTG-CTG--TCTCTAACCTGTCT  1090

seq1  CCTCTATAAGTCGTACTCATGTTCCCCGAC  1127
       |||||| ||||||||||||||   |||||
seq2  -CTCTAT-AGTCGTACTCATGT---CCGAC  1115