BAC Information

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BAC

Clone NameB6Ng01-253H21
Chromosome13 (Build37)13 (Build37)
Map Location 68,286,159 - 68,287,23567,182,828 - 67,183,302
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp87, Zfp748, A530054K11Rik, LOC328277, 3830402I07Rik, EG666137, Zfp85-rs1, LOC674597, Zfp273, BC048507, LOC666185, LOC100042687, LOC100042692, LOC674779, LOC677603, LOC100042124, LOC666222
Downstream geneAA414992, LOC666238, EG666245, EG666272, LOC100042223, Mtrr, LOC100042233, Fastkd3, 1700001L19Rik, Adcy2, LOC666205
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253H21.bB6Ng01-253H21.g
ACCGA060208GA060209
length1,083470
definitionB6Ng01-253H21.b B6Ng01-253H21.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(68,286,159 - 68,287,235)(67,182,828 - 67,183,302)
sequence
gaattccaagtgtaattccaagaatgatgtcccaccctcctgaccttgcg
tgacttcagggattgaactctggtcctcctgttttagccactgagctatt
tccccagccctccccctgctttcacaggactctcattccttccacaattt
gtagtccgtgtatccagaaccttttatgttctagttctcaaaggattgaa
ttctgatcttctgctgttggagcctctgagactgtcttgatgacatggga
tgaggggtgtgatgaggatagacttgcttcctgtacagacattcaactaa
ccccttccctgaagccccactcttccttcctgggcctttctgtgaccctg
tggccacttgctgctttgtcttccactgagtgaactgaatgtaagcagtt
acaggcctctaagctgattatcaccccgctcccagtttgtactttcactt
ccaacatatgtgggtgcctcctagttagatcctctctcactttttaaaaa
taaaataacattatgatgtgattacattacttctcatctttcatttcctt
ccaccaaagcaccccatgtcctttccagccagtcctttccctcttccccc
actttctctctaaatggttgccccattttttgacaaatacacacacacac
acacacacacacacacacacacacacacacacacacacatatatatatat
atatatatatatatatatatatacacattaacatattaatacaaccccat
gagactatttagttgttgattgtatgtgtatgattttaagggctgcccac
atgacattagataacaattaggaaggtcatctttggagagacaaattctc
tttctctgactttaataaggagtcctatttcgtgagaactgaagctagtg
ccaaatatcagaaatctgaactccaaggcaacagcctggaggtccatcgt
ctgagacatcgacatcatgacttctgacatggacacacgcaacagtgaag
aactgggattaaggttgctttcacatgaagagagtgcagtgtcaactgaa
ttcaagggtcctcgaagtcaataaaggtaattt
cagccttggcttcttccaatggacagcaatccaggttatgtaaaccaaat
aaactcttttctcctgtgatttctattcttggtacttgactacatctaga
attagatggaatccagaagaaatacaagggacacctttgagggatttttg
tttgtttgaagtgggtggatccacttctagtcatgacttgtgaggtagat
gttgtgggttgccctggtgctgtttgtattctgatgttaattcagcttcc
tcaagaggggttgcccctgagaggagtggatcacatactcaggtgatttc
ctgtgaaccttctccccattctaactggtcaaataaagactagagcctgt
gattgggcagtggaagggaaaggtggggctagaggttttaggaagtgagg
gaagagtagggagcgagggaggaagaagactgttgaagataatttcacca
ggaaaatggagcacaaccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_68286159_68287235
seq2: B6Ng01-253H21.b_44_1126

seq1  GAATTCCAACTGTAATTTCAAGAATAATGTCCCACCCTCCTGACCTTTCG  50
      ||||||||| ||||||| ||||||| ||||||||||||||||||||| ||
seq2  GAATTCCAAGTGTAATTCCAAGAATGATGTCCCACCCTCCTGACCTTGCG  50

seq1  TGACTTCTGGGATTGAACTCTGGTCCTCCTGTTTTAGCCACTGTGCTATT  100
      ||||||| ||||||||||||||||||||||||||||||||||| ||||||
seq2  TGACTTCAGGGATTGAACTCTGGTCCTCCTGTTTTAGCCACTGAGCTATT  100

seq1  TCCTCAGCCTTTCCCCTGCTTTCACAGGACTCTCATTCCTTCCATAATTT  150
      ||| ||||| | |||||||||||||||||||||||||||||||| |||||
seq2  TCCCCAGCCCTCCCCCTGCTTTCACAGGACTCTCATTCCTTCCACAATTT  150

seq1  ATAGCCCCTATATCCAGAACCTTTTATGTTCTACTTCTCAAAGGATTGAA  200
       ||| || | ||||||||||||||||||||||| ||||||||||||||||
seq2  GTAGTCCGTGTATCCAGAACCTTTTATGTTCTAGTTCTCAAAGGATTGAA  200

seq1  TTCTGATCTTCTACTGTTTGGAGCCTCTGAGACTGTCTTGGTGACATGGG  250
      |||||||||||| ||| ||||||||||||||||||||||| |||||||||
seq2  TTCTGATCTTCTGCTG-TTGGAGCCTCTGAGACTGTCTTGATGACATGGG  249

seq1  ATGAGGGGTGTGATGAGGACAGACTTGCTTCCTGTACAGACATTCAACTA  300
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATGAGGGGTGTGATGAGGATAGACTTGCTTCCTGTACAGACATTCAACTA  299

seq1  ACCCCTTCACTGAAGCCCCACTCTTCCTTCCTGGGCATTTCTGTGACCCT  350
      |||||||| ||||||||||||||||||||||||||| |||||||||||||
seq2  ACCCCTTCCCTGAAGCCCCACTCTTCCTTCCTGGGCCTTTCTGTGACCCT  349

seq1  GTGGCCACTTGCTGCTTTGTCTTCCACTGAGTGAATTGAATGTATGCAGT  400
      ||||||||||||||||||||||||||||||||||| |||||||| |||||
seq2  GTGGCCACTTGCTGCTTTGTCTTCCACTGAGTGAACTGAATGTAAGCAGT  399

seq1  TACAGGCCTCTAAGCTGATTATCA-CCTGCTCCCTGTTTGTTCTTTCACT  449
      |||||||||||||||||||||||| || |||||| |||||| ||||||||
seq2  TACAGGCCTCTAAGCTGATTATCACCCCGCTCCCAGTTTGTACTTTCACT  449

seq1  TCCAACATATGTGGGTGCCCCCTAGTCAGATACTCTCTTAATTTTTTAAA  499
      ||||||||||||||||||| |||||| |||| |||||| | ||||| |||
seq2  TCCAACATATGTGGGTGCCTCCTAGTTAGATCCTCTCTCACTTTTTAAAA  499

seq1  ATAAAA-AAATTTATGATGCCATTATCTTACTTCTCCTCTTTCATTTCCT  548
      |||||| ||  ||||||||  ||||  ||||||||| |||||||||||||
seq2  ATAAAATAACATTATGATGTGATTACATTACTTCTCATCTTTCATTTCCT  549

seq1  TCCTGCAATCCACCCCATGTCCTTTTAGGCCAGTCATTTCCCTCTTCCCC  598
      |||  |||  |||||||||||||||   ||||||| ||||||||||||||
seq2  TCCACCAAAGCACCCCATGTCCTTTCCAGCCAGTCCTTTCCCTCTTCCCC  599

seq1  CACTTTCTCTCTACTTGGTTTCCCTATTTTTTGACAATTACACACACACA  648
      |||||||||||||  ||||| ||| |||||||||||| ||||||||||||
seq2  CACTTTCTCTCTAAATGGTTGCCCCATTTTTTGACAAATACACACACACA  649

seq1  CACACACACACAAATATATATATATATATATATACATATATATATATGTA  698
      |||||||||||| | | | | | | | | | | ||| | |||      ||
seq2  CACACACACACACACACACACACACACACACACACACACATA------TA  693

seq1  TATATATACATATATATATACATATATATACTCATTAACATATTAGTACA  748
      |||||||| ||||||||||| |||||||||| ||||||||||||| ||||
seq2  TATATATATATATATATATATATATATATACACATTAACATATTAATACA  743

seq1  ACCCAATGAGACTATTTAG-TGTTGCTTTTATGTGTATGA-TTTCAGGGC  796
      |||| |||||||||||||| ||||| || ||||||||||| ||| |||||
seq2  ACCCCATGAGACTATTTAGTTGTTGATTGTATGTGTATGATTTTAAGGGC  793

seq1  TGCCCACATGACATTAGATAACAATTAGGAAGGTCATCTCTGGAGAGACT  846
      ||||||||||||||||||||||||||||||||||||||| ||||||||| 
seq2  TGCCCACATGACATTAGATAACAATTAGGAAGGTCATCTTTGGAGAGACA  843

seq1  AATTCTCTCTTTCTCTGAC-TCAAGAAGGAATCAGATTT-GTAAGAACTG  894
      |||  |||||||||||||| | || ||||| ||  |||| || |||||||
seq2  AAT--TCTCTTTCTCTGACTTTAATAAGGAGTCCTATTTCGTGAGAACTG  891

seq1  AAGCCAGTGCCAAATAACAGAAATCTGA--CCCAAGACAACAAGCCTGGA  942
      |||| ||||||||||| |||||||||||   ||||| |||| ||||||||
seq2  AAGCTAGTGCCAAATATCAGAAATCTGAACTCCAAGGCAAC-AGCCTGGA  940

seq1  GG-CCATC-ACTGAGACATCAACACCATGAC-TCTGACAGGGACACACAC  989
      || |||||  |||||||||| ||| |||||| ||||||| |||||||| |
seq2  GGTCCATCGTCTGAGACATCGACATCATGACTTCTGACATGGACACACGC  990

seq1  AAAAGTGAAGAACTGGG-TTAAGGTTGCTTTCACAGGA--AGAGTGCAGT  1036
      || |||||||||||||| ||||||||||||||||| ||  ||||||||||
seq2  AACAGTGAAGAACTGGGATTAAGGTTGCTTTCACATGAAGAGAGTGCAGT  1040

seq1  GTCAACTGAGTTCAAGGGT-CTCG-AGTAGATAAGGGTAATTT  1077
      ||||||||| ||||||||| |||| |||  |||| ||||||||
seq2  GTCAACTGAATTCAAGGGTCCTCGAAGTCAATAAAGGTAATTT  1083

seq1: chr13_67182828_67183302
seq2: B6Ng01-253H21.g_69_544

seq1  GAATTCCAGCCTTGGCTTCTTCCAATGGACAGCAATCCAGGTTATGTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCCTTGGCTTCTTCCAATGGACAGCAATCCAGGTTATGTAAA  50

seq1  CCAAATAAACTCTTTTCTCCTGTGATTTCTATTCTTGGTACTTGACTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATAAACTCTTTTCTCCTGTGATTTCTATTCTTGGTACTTGACTACA  100

seq1  TCTAGAATTAGATGGAATCCAGAAGAAATACAAGGGACACCTTTGAGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAATTAGATGGAATCCAGAAGAAATACAAGGGACACCTTTGAGGGA  150

seq1  TTTTTGTTTGTTTGAAGTGGGTGGATCCACTTCTAGTCATGACTTGTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTGTTTGAAGTGGGTGGATCCACTTCTAGTCATGACTTGTGAG  200

seq1  GTAGATGTTGTGGGTTGCCCTGGTGCTGTTTGTATTCTGATGTTAATTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATGTTGTGGGTTGCCCTGGTGCTGTTTGTATTCTGATGTTAATTCA  250

seq1  GCTTCCTCAAGAGGGGTTGCCCCTGAGAGGAGTGGATCACATACTCAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTCAAGAGGGGTTGCCCCTGAGAGGAGTGGATCACATACTCAGGT  300

seq1  GATTTCCTGTGAACCTTCTCCCCATTCTAACTGGTCAAATAAAGACTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCTGTGAACCTTCTCCCCATTCTAACTGGTCAAATAAAGACTAGA  350

seq1  GCCTGTGATTGGGCAGTGGAAGGGAAAGGTGGGGCTAGAGGTTTTAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGATTGGGCAGTGGAAGGGAAAGGTGGGGCTAGAGGTTTTAGGAA  400

seq1  GTGAGGGAAGAGTAGGGAGCGAGGGAGGAAGAAGACTGAGGAAGAGAAGA  450
      ||||||||||||||||||||||||||||||||||||||  ||||| ||  
seq2  GTGAGGGAAGAGTAGGGAGCGAGGGAGGAAGAAGACTGTTGAAGATAATT  450

seq1  T-AAGAGGAAGATGGAGCAGAACCAC  475
      | |  ||||| |||||||| ||||||
seq2  TCACCAGGAAAATGGAGCACAACCAC  476