BAC Information

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BAC

Clone NameB6Ng01-253J02
Chromosome13 (Build37)13 (Build37)
Map Location 65,986,137 - 65,986,81565,305,489 - 65,306,632
singlet/doubletsingletsinglet
Overlap geneVmn2r-ps99
Upstream geneCntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404, LOC628722, LOC665851
Downstream geneLOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik, Mzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253J02.bB6Ng01-253J02.g
ACCGA060264GA060265
length1,0611,133
definitionB6Ng01-253J02.b B6Ng01-253J02.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(65,986,137 - 65,986,815)(65,305,489 - 65,306,632)
sequence
gaattctcccactattattgtgtgaggtgtaatgtgtgctttgagcttta
ctaaagtttctttaatgaatgtggctgcccttgcatttggagcatagata
ttcagaattgagagttcctcttggaggattttacctttggtgagtatgaa
gtgtccctccttgtcttttttgataactttgggttggaagtcgattttat
tcgatattagaatggctactccagcttgtttcttcagaccatttgcttgc
aaaattgttttccagcctttcattctgaggtagtgtctgtctttttccct
gagatgggtttcctgtaagcagcaagtgtttgtgtagccagtctgttagt
ctatgtctttttattggggaatagagtccattgatattacgacatactaa
ggaaacgtaattgttgcttcctattatttttgttgttcgagttgtcattc
tgttcttgtggctgtcttcttttaggtttgttgaaggattactttcttgt
tttttctagggcgtggtttctgtccttttattggtttttttctgttatta
tcctttgaagggctggattcatggaaagataatgtgtgaatttggttttg
tcgtggaatactttggtttctccatctatggtaattgaaagtttggctga
gtatagtagcctggtctggcatttgtgttctcttagtgtctgtataacat
ctgtccagaatcttctggctttcatagtctctggtgagaagtctggtgta
attctgataggcctgcctttatatgttacttgatccttttcccttactgc
ttttaatattctatctttatttagtgcatttgttgttctggttattatgt
gttgggaggaatttcttttctggcttttattttttaaaaagtatttttgg
gggctgggagagatggctcagtgggttaagagcactgaactgtctttgaa
gttcctgaatttcaaatctcagccaaccacatggtgctcataccatctgt
aatgagatctgatgccctctcttggtgcatttgaagacagcttcagtgta
ctttagatata
gaattcttgtctcaaaaagccagaaaaacaaaaacaaaacaaaaaaaaac
aaaacaaaaacaaatgtcaccaggtggtgcatatgcctttaatttcagca
ctcaggagggcagaagcaggtgtatctctgagtttaaatcaagccagtgc
tacataaagaaaaaagaggaaaaaaagatggaaagaaaaccaaaaggaga
ataaccaatgaataagaagcatcagcggggctggtgagatggctcagcag
gtaagagcacccgactgctcttccgaaggtccagagttcaaatcccagca
accacatggtggctcacaaccatccgtaacaagacctgactccctcctct
ggtgtgtctgaagatagctaaagtgtacttatatataataataaataaat
cttaaaaaaaaaaaaagaagcatcagcaagcatccagaaacctcaccaca
tatcctactggttttaaaagcagggacagtcacaactctcaacccataaa
attgatgattttgtttatatatgcaggttattggaaaaagacattcttca
ccttccattttttcttatttaaaaggtttttttatttcagcattgggcac
caaactcaggaccttaagtaggttagccaagtctgcctaccactaagcta
aaccttcaaccacaaagggaaatgttgaaggctaactttaccaggtgaaa
caaattcctccccaagacttcaggttccaacatcttcatcagtaagttgg
atcaaaacaaattaattttgtccctccagaacttattttacacataccac
acccacacctcttacaggagcagaggattcagactatgcatgaacacaca
catttgtgtcagaaccccaagtgtttgaggcacatgttggaagtggtaac
aaatatttaactactcaactccagtatctgcccttgattatcacattaca
gtttccctggtgtccagtctccacatggtttacccttagaaagatttata
atcgacagtctctttttttccaccttgagtattagagttcagactttgaa
atatttgtttcactcagtctacaactcacacttcagccacctggtaaaga
acagtatataccagacaaccttgccaatgcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_65986137_65986815
seq2: B6Ng01-253J02.b_420_1102

seq1  CATTGATATTACGACATACTAAGGAAACGTAATTGTTGCTTCCTATTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATATTACGACATACTAAGGAAACGTAATTGTTGCTTCCTATTATT  50

seq1  TTTGTTGTTCGAGTTGTCATTCTGTTCTTGTGGCTGTCTTCTTTTAGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGTTCGAGTTGTCATTCTGTTCTTGTGGCTGTCTTCTTTTAGGTT  100

seq1  TGTTGAAGGATTACTTTCTTGTTTTTTCTAGGGCGTGGTTTCTGTCCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAAGGATTACTTTCTTGTTTTTTCTAGGGCGTGGTTTCTGTCCTTT  150

seq1  TATTGGTTTTTTTCTGTTATTATCCTTTGAAGGGCTGGATTCATGGAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGTTTTTTTCTGTTATTATCCTTTGAAGGGCTGGATTCATGGAAAG  200

seq1  ATAATGTGTGAATTTGGTTTTGTCGTGGAATACTTTGGTTTCTCCATCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTGTGAATTTGGTTTTGTCGTGGAATACTTTGGTTTCTCCATCTA  250

seq1  TGGTAATTGAAAGTTTGGCTGAGTATAGTAGCCTGGTCTGGCATTTGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAATTGAAAGTTTGGCTGAGTATAGTAGCCTGGTCTGGCATTTGTGT  300

seq1  TCTCTTAGTGTCTGTATAACATCTGTCCAGAATCTTCTGGCTTTCATAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTAGTGTCTGTATAACATCTGTCCAGAATCTTCTGGCTTTCATAGT  350

seq1  CTCTGGTGAGAAGTCTGGTGTAATTCTGATAGGCCTGCCTTTATATGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTGAGAAGTCTGGTGTAATTCTGATAGGCCTGCCTTTATATGTTA  400

seq1  CTTGATCCTTTTCCCTTACTGCTTTTAATATTCTATCTTTATTTAGTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATCCTTTTCCCTTACTGCTTTTAATATTCTATCTTTATTTAGTGCA  450

seq1  TTTGTTGTTCTGGTTATTATGTGTTGGGAGGAATTTCTTTTCTGGC-TTT  499
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTTGTTGTTCTGGTTATTATGTGTTGGGAGGAATTTCTTTTCTGGCTTTT  500

seq1  ATTTTTTAAAAAGTA-TTTTGGGGGCT-GGAGAGATGGCTCAGT-GGTTA  546
      ||||||||||||||| ||||||||||| |||||||||||||||| |||||
seq2  ATTTTTTAAAAAGTATTTTTGGGGGCTGGGAGAGATGGCTCAGTGGGTTA  550

seq1  AGAGCACTG-ACTGTTCTTTTGAAGGTCCTG-AGTTCAAATCCCAG-CAA  593
      ||||||||| |||||   ||||||| ||||| | |||||||| ||| |||
seq2  AGAGCACTGAACTGT--CTTTGAAGTTCCTGAATTTCAAATCTCAGCCAA  598

seq1  CCACATGGTGGCTCATAACCATCTGTAATGAGATCTGATGCCCTCTTCTG  643
      ||||||||| |||||| |||||||||||||||||||||||||||||  ||
seq2  CCACATGGT-GCTCAT-ACCATCTGTAATGAGATCTGATGCCCTCTCTTG  646

seq1  GTGCATCTGAAGACAGCTCCAGTGTAC-TTAGATATA  679
      |||||| ||||||||||| |||||||| |||||||||
seq2  GTGCATTTGAAGACAGCTTCAGTGTACTTTAGATATA  683

seq1: chr13_65305489_65306632
seq2: B6Ng01-253J02.g_67_1199

seq1  GAATTCTTGTCTCAAAAAGCCAGAAAAACAAAAACAAAACAAAAAAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTCTCAAAAAGCCAGAAAAACAAAAACAAAACAAAAAAAAAC  50

seq1  AAAACAAAAACAAATGTCACCAGGTGGTGCATATGCCTTTAATTTCAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAACAAATGTCACCAGGTGGTGCATATGCCTTTAATTTCAGCA  100

seq1  CTCAGGAGGGCAGAAGCAGGTGTATCTCTGAGTTTAAATCAAGCCAGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGAGGGCAGAAGCAGGTGTATCTCTGAGTTTAAATCAAGCCAGTGC  150

seq1  TACATAAAGAAAAAAGAGGAAAAAAAGATGGAAAGAAAACCAAAAGGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAAAGAAAAAAGAGGAAAAAAAGATGGAAAGAAAACCAAAAGGAGA  200

seq1  ATAACCAATGAATAAGAAGCATCAGCGGGGCTGGTGAGATGGCTCAGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCAATGAATAAGAAGCATCAGCGGGGCTGGTGAGATGGCTCAGCAG  250

seq1  GTAAGAGCACCCGACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAGCACCCGACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCA  300

seq1  ACCACATGGTGGCTCACAACCATCCGTAACAAGACCTGACTCCCTCCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATGGTGGCTCACAACCATCCGTAACAAGACCTGACTCCCTCCTCT  350

seq1  GGTGTGTCTGAAGATAGCTAAAGTGTACTTATATATAATAATAAATAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGTCTGAAGATAGCTAAAGTGTACTTATATATAATAATAAATAAAT  400

seq1  CTTAAAAAAAAAAAAAGAAGCATCAGCAAGCATCCAGAAACCTCACCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAAAAAAAAAAGAAGCATCAGCAAGCATCCAGAAACCTCACCACA  450

seq1  TATCCTACTGGTTTTAAAAGCAGGGACAGTCACAACTCTCAACCCATAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTACTGGTTTTAAAAGCAGGGACAGTCACAACTCTCAACCCATAAA  500

seq1  ATTGATGATTTTGTTTATATATGCAGGTTATTGGAAAAAGACATTCTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATGATTTTGTTTATATATGCAGGTTATTGGAAAAAGACATTCTTCA  550

seq1  CCTTCCATTTTTTCTTATTTAAAAGGTTTTTTTATTTCAGCATTGGGCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCATTTTTTCTTATTTAAAAGGTTTTTTTATTTCAGCATTGGGCAC  600

seq1  CAAACTCAGGACCTTAAGTAGGTTAGCCAAGTCTGCCTACCACTAAGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCAGGACCTTAAGTAGGTTAGCCAAGTCTGCCTACCACTAAGCTA  650

seq1  AACCTTCAACCACAAAGGGAAATGTTGAAGGCTAACTTTACCAGGTGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTCAACCACAAAGGGAAATGTTGAAGGCTAACTTTACCAGGTGAAA  700

seq1  CAAATTCCTCCCCAAGACTTCAGGTTCCAACATCTTCATCAGTAAGTTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTCCTCCCCAAGACTTCAGGTTCCAACATCTTCATCAGTAAGTTGG  750

seq1  ATCAAAACAAATTAATTTTGTCCCTCCAGAACTTATTTTACACATACCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAACAAATTAATTTTGTCCCTCCAGAACTTATTTTACACATACCAC  800

seq1  ACCCACACCTCTTACAGGAGCAGAGGATTCAGACTATGCATGAACACACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACACCTCTTACAGGAGCAGAGGATTCAGACTATGCATGAACACACA  850

seq1  CATTTGTGTCAGAACCCCAAGTGTTTGAGGCACATGTTGGAAGTGGTAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTGTCAGAACCCCAAGTGTTTGAGGCACATGTTGGAAGTGGTAAC  900

seq1  AAATATTTAACTACTCAACTCCAGTATCTG-CCTTGATTATCACATTACA  949
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAATATTTAACTACTCAACTCCAGTATCTGCCCTTGATTATCACATTACA  950

seq1  GTTT-CCTGGTGTTCCAGTCTCCACATGG-TTACCCTTAGAAAGATTAAT  997
      |||| ||||||| |||||||||||||||| ||||||||||||||||| ||
seq2  GTTTCCCTGGTG-TCCAGTCTCCACATGGTTTACCCTTAGAAAGATTTAT  999

seq1  TAAATCGACAGTCTC-TTTTTTCCACCTTTGGAGGTATTAGAGTTCAGGA  1046
        ||||||||||||| |||||||||||||  || ||||||||||||| ||
seq2  --AATCGACAGTCTCTTTTTTTCCACCTT--GA-GTATTAGAGTTCA-GA  1043

seq1  CTTTGATATATTTGTTTCACTCAGGGTCTACAACTCAACACTCCAGCCAA  1096
      |||||| ||||||||||||||||  ||||||||||| ||||| |||||| 
seq2  CTTTGAAATATTTGTTTCACTCA--GTCTACAACTC-ACACTTCAGCCAC  1090

seq1  CT-GTAAAG-ACAGTTTTTATTATTATCCAAGCAACCTTGCCCATGCATT  1144
      || |||||| ||||| | ||       |||  |||||||||| |||||||
seq2  CTGGTAAAGAACAGTATATA-------CCAGACAACCTTGCCAATGCATT  1133