BAC Information

Click to search

BAC

Clone NameB6Ng01-255I19
Chromosome13 (Build37)
Map Location 7,185,545 - 7,186,699
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039388, LOC100039395, Pitrm1, Pfkp, LOC100039532
Downstream geneLOC667611, EG623516, LOC791083, LOC382722
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-255I19.bB6Ng01-255I19.g
ACCGA061730GA061731
length1,1461,038
definitionB6Ng01-255I19.b B6Ng01-255I19.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccccagagaagagctcatcaatttgttatctaacatcaaatgatc
agcactgaacatatacatacaagtaacattacacagattgggaatgttat
atttaagactatatatattatatacatatacatatattcatgtatcaaca
actaaaggaaaaggccatgatttgaaaaaagaggtatgtatgcagaagaa
atgttatgtgagaaggtttggagggtgaaaaataaaaggaaaatgatgtg
atcgtaatcttaaaaatcaatgaaataatcaaaattcacagattatgtca
tccacacaatataacaatatccccataataatatccccaaatatatccaa
atcttccaaggaagatcctgtgccttcacttcactcacagtggatgataa
acaagcatgggaaagtttaagagaacattgaaactgtcgttttgtaactt
aaatatccacttagttcaattggacactgggttgaagccaaagacattaa
aaagataaccagacaagtattatctttatttcaaataaggaaagacgtgt
aatgattatattatttcactggtatttgaaagagatgcctttccccattg
ctagagatatttttattccctgtacatgagcactaaaacttccaggctga
atatcagtgatttggaaataaattattagtaagaagtggaatgtaaaata
ttgtgatatactactgtaaaatgccaatgttgctaaagaatataaggaat
tgataatctggtaagagtttatttagaatataagttttaaaagtgggttt
tatttcacttactgtgctttatgccatgaaagagaaacctttatgacaac
actatttccaaatgaatactgtggattttctagtaacataattagaaact
ctgcctttcagtcagaggcatcgtagaatcaactaaaggatatttgaaaa
tatttgcaacctcttgcagtcaccttttgcagaaagttggtatgtaacag
caaagagctacctggtcagtgctaatccacaatttcacaaagcatacatt
aaaacattattgtaaatttttattacgagaatttttattacagaaaatgc
caagttagtcaattttctctctttcatatatacaagataaccttgg

gaattctgttcatgtggctatcttcttttaggtttgttgaaagattattt
tcttgctttttctagagtgtagtttccctccttgtgttggagttttccct
ttattttttattattgtttgaagggctggattggtgggaagatattgtgt
aaatttggttttgtcatggaataccttgtgtctccatctattgtaattga
gagttttgctgggtataatagcctgggctagcatttgtgttctcttaggg
tctgtatgacatctgcccaggatcttctagctttcatagtctcaggtgag
aagtctggtgtaattctagtaggtctgcctttatgtgttatttgaccctt
tttccttactccttctaatactctttctttgttttgtgcatttggtattt
tgattattatgtgacatgaggaatttcttttctgttccaaaattctgtag
gcttcttgtatgttcatgggtatctttttctttaggttggggaagttttc
ttctatagttttgttgaagatatttactggccctttaatttggaaatctt
ccttctcctctatgcctattatctttaggtttggtttttctcattgtgtc
ctggatttcctgtatgttttggttaggatcttttttgcattttgtatttt
ctttgattgttatgtcaatgttttgtcaatgtttttctatggagtctttg
gcacctgatattctctcttctatctctttgtattctgtttgttatgcttg
catctatggctcctgacttcttccctaggttttctatttccagcattgtc
tcccctttgtggttttcttaatggtttatacttccattttttagatcctg
ggatggttttgttcaattctttcacctgtttggatgtgttcctcctgtat
ttctttaaagggcattattatgtccctcttatagtccttcatgttcatca
tgagaagtggactttaaattttatctggcttttcggttgatggtgtatcc
acgaacttgctattgggggagaagtgggtctctataca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_7185545_7186699
seq2: B6Ng01-255I19.b_48_1193 (reverse)

seq1  CCAAGTTTATCTTTGTATATATGAA--AGAGAAATATGACATAATTTGGG  48
      ||||| ||||| |||||||||||||  |||||||  |||| ||| |||| 
seq2  CCAAGGTTATC-TTGTATATATGAAAGAGAGAAAATTGAC-TAACTTGG-  47

seq1  CCATTTTCTGTAATAAAAATATCTTCGTAATAAAAATTTACAATAATGTT  98
       ||||||||||||||||||| || ||||||||||||||||||||||||||
seq2  -CATTTTCTGTAATAAAAAT-TC-TCGTAATAAAAATTTACAATAATGTT  94

seq1  TTAATGTATGCTTTGTGAAATTGTGGATTAGCACTGGACCAGGTAGGCTC  148
      ||||||||||||||||||||||||||||||||||| ||||||||| ||||
seq2  TTAATGTATGCTTTGTGAAATTGTGGATTAGCACT-GACCAGGTA-GCTC  142

seq1  TTTGCTTGTTACATACCAACTTTCTTGCAAAAGGTTGACTGCAAGAGGTT  198
      ||||| |||||||||||||||||| ||||||||| |||||||||||||||
seq2  TTTGC-TGTTACATACCAACTTTC-TGCAAAAGG-TGACTGCAAGAGGTT  189

seq1  GCAAATATTTTCAAATATCCTTTAGTTGATTCTACGATGCCTCTGACTGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATATTTTCAAATATCCTTTAGTTGATTCTACGATGCCTCTGACTGA  239

seq1  AAGGCAGAGTTTCTAATTATGTTACTAGAAAATCCACAGTATTCATTTGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGAGTTTCTAATTATGTTACTAGAAAATCCACAGTATTCATTTGG  289

seq1  AAATAGTGTTGTCATAAAGGTTTCTCTTTCATGGCATAAAGCACAGTAAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTGTTGTCATAAAGGTTTCTCTTTCATGGCATAAAGCACAGTAAG  339

seq1  TGAAATAAAACCCACTTTTAAAACTTATATTCTAAATAAACTCTTACCAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAAAACCCACTTTTAAAACTTATATTCTAAATAAACTCTTACCAG  389

seq1  ATTATCAATTCCTTATATTCTTTAGCAACATTGGCATTTTACAGTAGTAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCAATTCCTTATATTCTTTAGCAACATTGGCATTTTACAGTAGTAT  439

seq1  ATCACAATATTTTACATTCCACTTCTTACTAATAATTTATTTCCAAATCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAATATTTTACATTCCACTTCTTACTAATAATTTATTTCCAAATCA  489

seq1  CTGATATTCAGCCTGGAAGTTTTAGTGCTCATGTACAGGGAATAAAAATA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATATTCAGCCTGGAAGTTTTAGTGCTCATGTACAGGGAATAAAAATA  539

seq1  TCTCTAGCAATGGGGAAAGGCATCTCTTTCAAATACCAGTGAAATAATAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAGCAATGGGGAAAGGCATCTCTTTCAAATACCAGTGAAATAATAT  589

seq1  AATCATTACACGTCTTTCCTTATTTGAAATAAAGATAATACTTGTCTGGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTACACGTCTTTCCTTATTTGAAATAAAGATAATACTTGTCTGGT  639

seq1  TATCTTTTTAATGTCTTTGGCTTCAACCCAGTGTCCAATTGAACTAAGTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTTTAATGTCTTTGGCTTCAACCCAGTGTCCAATTGAACTAAGTG  689

seq1  GATATTTAAGTTACAAAACGACAGTTTCAATGTTCTCTTAAACTTTCCCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTAAGTTACAAAACGACAGTTTCAATGTTCTCTTAAACTTTCCCA  739

seq1  TGCTTGTTTATCATCCACTGTGAGTGAAGTGAAGGCACAGGATCTTCCTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTTTATCATCCACTGTGAGTGAAGTGAAGGCACAGGATCTTCCTT  789

seq1  GGAAGATTTGGATATATTTGGGGATATTATTATGGGGATATTGTTATATT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGATTTGGATATATTTGGGGATATTATTATGGGGATATTGTTATATT  839

seq1  GTGTGGATGACATAATCTGTGAATTTTGATTATTTCATTGATTTTTAAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGATGACATAATCTGTGAATTTTGATTATTTCATTGATTTTTAAGA  889

seq1  TTACGATCACATCATTTTCCTTTTATTTTTCACCCTCCAAACCTTCTCAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGATCACATCATTTTCCTTTTATTTTTCACCCTCCAAACCTTCTCAC  939

seq1  ATAACATTTCTTCTGCATACATACCTCTTTTTTCAAATCATGGCCTTTTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATTTCTTCTGCATACATACCTCTTTTTTCAAATCATGGCCTTTTC  989

seq1  CTTTAGTTGTTGATACATGAATATATGTATATGTATATAATATATATAGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGTTGTTGATACATGAATATATGTATATGTATATAATATATATAGT  1039

seq1  CTTAAATATAACATTCCCAATCTGTGTAATGTTACTTGTATGTATATGTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATATAACATTCCCAATCTGTGTAATGTTACTTGTATGTATATGTT  1089

seq1  CAGTGCTGATCATTTGATGTTAGATAACAAATTGATGAGCTCTTCTCTGG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTGATCATTTGATGTTAGATAACAAATTGATGAGCTCTTCTCTGG  1139

seq1  GGAATTC  1155
      |||||||
seq2  GGAATTC  1146


| Home | SequenceCutter | Blast | Download |