BAC Information

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BAC

Clone NameB6Ng01-255O04
Chromosome13 (Build37)
Map Location 24,823,831 - 24,959,270
singlet/doubletdoublet
Overlap gene6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik
Upstream geneHist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017, Cmah, 5830431A10Rik
Downstream geneAldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a, Nrsn1, Tpi-rs8, LOC214973
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-255O04.bB6Ng01-255O04.g
ACCGA061984GA061985
length1,1131,081
definitionB6Ng01-255O04.b B6Ng01-255O04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,958,156 - 24,959,270)(24,823,831 - 24,824,918)
sequence
gaattcctgaccctcctgcctttggcacccaaatgctagggtgacaggaa
ggttacaggcatgctaccactctcaactgggagctgaggagcctaggaca
ggaagctaaaagaacccccagtttatcatggtgtcactgtaagccttctt
ggccctaacacaaagcactcaatctgacagtataaacaaacagaaaccac
cgaacatggaggatacgcacggctgccatcgatcagggctgaggtcaaag
gcacactgagctcttgtgtctggggagaaacaacagctacaggtggctgg
ttgactcttgcagctgtgagacaaaaaaaagacagcaacttagcctacac
cggacacaccagtcagacacacacaaaggcaccctctttctaaatgctaa
ttctaaacatcttgtagaggtcttcacacacatacccgctgctcctctcc
tcccacacacacctccctgggcctcaactgtgggaaactccccaaactgt
caaacccctcctgtggattttgagcttgtctgtcagtctacaattctata
ggtaaagtcagactcaaggagtaagtcatacaatgtgtactgtggttaca
gaaaagcaaggctagattgcagggctttatgataggagtagtgatctgaa
tagctttgacccccagagactcatgtgtttcaatgctgggccatagggag
tggcactcttaggaggtgtggccttgttggaggaagtatatcactgtgta
ggcaggctttgagatatcctatgttcaagctctgcccagtgtggaataag
agcctcctctggctgcctgcagaacacagtctctccctgacgcctgcaga
tcaagatgtagaactctcgcctcctccctcaccatgtctgcctacaagct
gccatgcttctcaccatgatgataacgaactaaacctctgaaactgcaat
tttcagattaaatcaccaatgaagagtcccttgggttatggtgtctctca
caacaatggaaaccccaactagacatgagcgtagcctccaattcactatg
cataacccttttaagtcctgatcccccttgtctgggcctccagtgctaga
tccacagggtgaa
gaattcttcatgtgctatttggatacatacatatcgtatgccttgccgtc
tttctgctgtgttctcagggttgagtggccccttagttaccgaattttat
taaacagacaaagcacaaaaggaatgtactgcaaataaaagttgttgttt
tttttttttatttttacagagcctggcaaaagtgatcagctataagacag
taagttttggagctgagggtgtggctcccttggtagagtgctagcctagg
gagcaggaagcttgggtctatccccagcactgcacaagctggctatgctg
cgcatataaaatcagtgctcagaagagaagaaggatcagaagaagttcaa
ggtcatcttcagctacctagggagttcccagggcaacctgggatacatga
agctatgggggttgaggagacctaagttttctgtttttgtttttgttttt
gcttttttggttttttgagacagggtttctctgtgtagccctggctgtcc
tggaactcactctgtagaccaggctggcctcgaactcagaaatctgcctg
cctctgcctcccaagtgctgggatcaaaggcatgcgccaccacgcccggc
tgggacctaagttttatagcttagttttttatagttcctactatttgttt
ctatttccatcctgagaatcccatatcatctatccatgtggtttaagaga
ggaacggaagaattctgcttcgttgaggttgtgcctatactattaaaagt
aagcaaaaccttaagctttcgttctttaaccagagccatctttatcacac
tcttggttttttgttgtttggcttttgttttgtcttgaaacagagtcttc
ctattgtagtccttcaccaacctggaactcaatatacagtccagcctgac
ctcgacttgcaagggttctccagcctctgcctccagagctggggttatag
gcacaagccactaggcctggtctacatgtgtatttttttttctaagacaa
tacacacgcctaagtggtagatcagaaagatgtatttctctttaaggtga
aactggaccttggatgatctaaggtcactgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_24958156_24959270
seq2: B6Ng01-255O04.b_44_1156 (reverse)

seq1  TTCACCCTGTGATTCTAGCACTTGGGAGGCCCAGAC-AGGGGGATCAGGA  49
      |||||||||||  |||||||||  |||||||||||| |||||||||||||
seq2  TTCACCCTGTGGATCTAGCACT--GGAGGCCCAGACAAGGGGGATCAGGA  48

seq1  CTTTAAAAGGTTATGCATAGTGAATTGGAGGCTACGCTCATGTCTTAGTT  99
      ||| ||| |||||||||||||||||||||||||||||||||||| |||||
seq2  CTTAAAAGGGTTATGCATAGTGAATTGGAGGCTACGCTCATGTC-TAGTT  97

seq1  GGGGTTTCCATTGTTGTGAAGAGACACCATAA-CCAAGGGACTCTTCATT  148
      |||||||||||||||||| ||||||||||||| |||||||||||||||||
seq2  GGGGTTTCCATTGTTGTG-AGAGACACCATAACCCAAGGGACTCTTCATT  146

seq1  GGTGATTTAATCTGAAAATTGCAGTTTCAGAGGTTTAGTTCGTTATCATC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATTTAATCTGAAAATTGCAGTTTCAGAGGTTTAGTTCGTTATCATC  196

seq1  ATGGTGAGAAGCATGGCAGCTTGTAGGCAGACATGGTGAGGGAGGAGGCG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGAGAAGCATGGCAGCTTGTAGGCAGACATGGTGAGGGAGGAGGCG  246

seq1  AGAGTTCTACATCTTGATCTGCAGGCGTCAGGGAGAGACTGTGTTCTGCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTCTACATCTTGATCTGCAGGCGTCAGGGAGAGACTGTGTTCTGCA  296

seq1  GGCAGCCAGAGGAGGCTCTTATTCCACACTGGGCAGAGCTTGAACATAGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCCAGAGGAGGCTCTTATTCCACACTGGGCAGAGCTTGAACATAGG  346

seq1  ATATCTCAAAGCCTGCCTACACAGTGATATACTTCCTCCAACAAGGCCAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTCAAAGCCTGCCTACACAGTGATATACTTCCTCCAACAAGGCCAC  396

seq1  ACCTCCTAAGAGTGCCACTCCCTATGGCCCAGCATTGAAACACATGAGTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCTAAGAGTGCCACTCCCTATGGCCCAGCATTGAAACACATGAGTC  446

seq1  TCTGGGGGTCAAAGCTATTCAGATCACTACTCCTATCATAAAGCCCTGCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGGTCAAAGCTATTCAGATCACTACTCCTATCATAAAGCCCTGCA  496

seq1  ATCTAGCCTTGCTTTTCTGTAACCACAGTACACATTGTATGACTTACTCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGCCTTGCTTTTCTGTAACCACAGTACACATTGTATGACTTACTCC  546

seq1  TTGAGTCTGACTTTACCTATAGAATTGTAGACTGACAGACAAGCTCAAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTCTGACTTTACCTATAGAATTGTAGACTGACAGACAAGCTCAAAA  596

seq1  TCCACAGGAGGGGTTTGACAGTTTGGGGAGTTTCCCACAGTTGAGGCCCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGGAGGGGTTTGACAGTTTGGGGAGTTTCCCACAGTTGAGGCCCA  646

seq1  GGGAGGTGTGTGTGGGAGGAGAGGAGCAGCGGGTATGTGTGTGAAGACCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGTGTGTGTGGGAGGAGAGGAGCAGCGGGTATGTGTGTGAAGACCT  696

seq1  CTACAAGATGTTTAGAATTAGCATTTAGAAAGAGGGTGCCTTTGTGTGTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAGATGTTTAGAATTAGCATTTAGAAAGAGGGTGCCTTTGTGTGTG  746

seq1  TCTGACTGGTGTGTCCGGTGTAGGCTAAGTTGCTGTCTTTTTTTTGTCTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTGGTGTGTCCGGTGTAGGCTAAGTTGCTGTCTTTTTTTTGTCTC  796

seq1  ACAGCTGCAAGAGTCAACCAGCCACCTGTAGCTGTTGTTTCTCCCCAGAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTGCAAGAGTCAACCAGCCACCTGTAGCTGTTGTTTCTCCCCAGAC  846

seq1  ACAAGAGCTCAGTGTGCCTTTGACCTCAGCCCTGATCGATGGCAGCCGTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGCTCAGTGTGCCTTTGACCTCAGCCCTGATCGATGGCAGCCGTG  896

seq1  CGTATCCTCCATGTTCGGTGGTTTCTGTTTGTTTATACTGTCAGATTGAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATCCTCCATGTTCGGTGGTTTCTGTTTGTTTATACTGTCAGATTGAG  946

seq1  TGCTTTGTGTTAGGGCCAAGAAGGCTTACAGTGACACCATGATAAACTGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGTGTTAGGGCCAAGAAGGCTTACAGTGACACCATGATAAACTGG  996

seq1  GGGTTCTTTTAGCTTCCTGTCCTAGGCTCCTCAGCTCCCAGTTGAGAGTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTTTTAGCTTCCTGTCCTAGGCTCCTCAGCTCCCAGTTGAGAGTG  1046

seq1  GTAGCATGCCTGTAACCTTCCTGTCACCCTAGCATTTGGGTGCCAAAGGC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCATGCCTGTAACCTTCCTGTCACCCTAGCATTTGGGTGCCAAAGGC  1096

seq1  AGGAGGGTCAGGAATTC  1115
      |||||||||||||||||
seq2  AGGAGGGTCAGGAATTC  1113

seq1: chr13_24823831_24824918
seq2: B6Ng01-255O04.g_67_1147

seq1  GAATTCTTCATGTGCTATTTGGATACATACATATCGTATGCCTTGCCGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATGTGCTATTTGGATACATACATATCGTATGCCTTGCCGTC  50

seq1  TTTCTGCTGTGTTCTCAGGGTTGAGTGGCCCCTTAGTTACCGAATTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCTGTGTTCTCAGGGTTGAGTGGCCCCTTAGTTACCGAATTTTAT  100

seq1  TAAACAGACAAAGCACAAAAGGAATGTACTGCAAATAAAAGTTGTTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGACAAAGCACAAAAGGAATGTACTGCAAATAAAAGTTGTTGTTT  150

seq1  TTTTTTTTTATTTTTACAGAGCCTGGCAAAAGTGATCAGCTATAAGACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTATTTTTACAGAGCCTGGCAAAAGTGATCAGCTATAAGACAG  200

seq1  TAAGTTTTGGAGCTGAGGGTGTGGCTCCCTTGGTAGAGTGCTAGCCTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTTGGAGCTGAGGGTGTGGCTCCCTTGGTAGAGTGCTAGCCTAGG  250

seq1  GAGCAGGAAGCTTGGGTCTATCCCCAGCACTGCACAAGCTGGCTATGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGGAAGCTTGGGTCTATCCCCAGCACTGCACAAGCTGGCTATGCTG  300

seq1  CGCATATAAAATCAGTGCTCAGAAGAGAAGAAGGATCAGAAGAAGTTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATATAAAATCAGTGCTCAGAAGAGAAGAAGGATCAGAAGAAGTTCAA  350

seq1  GGTCATCTTCAGCTACCTAGGGAGTTCCCAGGGCAACCTGGGATACATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATCTTCAGCTACCTAGGGAGTTCCCAGGGCAACCTGGGATACATGA  400

seq1  AGCTATGGGGGTTGAGGAGACCTAAGTTTTCTGTTTTTGTTTTTGTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATGGGGGTTGAGGAGACCTAAGTTTTCTGTTTTTGTTTTTGTTTTT  450

seq1  GCTTTTTTGGTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTTGGTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCC  500

seq1  TGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTG  550

seq1  CCTCTGCCTCCCAAGTGCTGGGATCAAAGGCATGCGCCACCACGCCCGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCTCCCAAGTGCTGGGATCAAAGGCATGCGCCACCACGCCCGGC  600

seq1  TGGGACCTAAGTTTTATAGCTTAGTTTTTTATAGTTCCTACTATTTGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACCTAAGTTTTATAGCTTAGTTTTTTATAGTTCCTACTATTTGTTT  650

seq1  CTATTTCCATCCTGAGAATCCCATATCATCTATCCATGTGGTTTAAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCCATCCTGAGAATCCCATATCATCTATCCATGTGGTTTAAGAGA  700

seq1  GGAACGGAAGAATTCTGCTTCGTTGAGGTTGTGCCTATACTATTAAAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACGGAAGAATTCTGCTTCGTTGAGGTTGTGCCTATACTATTAAAAGT  750

seq1  AAGCAAAACCTTAAGCTTTCGTTCTTTAACCAGAGCCATCTTTATCACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAACCTTAAGCTTTCGTTCTTTAACCAGAGCCATCTTTATCACAC  800

seq1  TCTTGGTTTTTTGTTGTTTGGCTTTTGTTTTGTCTTGAAACAGAGTCTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTTTTTTGTTGTTTGGCTTTTGTTTTGTCTTGAAACAGAGTCTTC  850

seq1  CTATTGTAGTCC-TGACCAACCTGGAACTCAATATACAGTCCAGCCTGAC  899
      |||||||||||| | |||||||||||||||||||||||||||||||||||
seq2  CTATTGTAGTCCTTCACCAACCTGGAACTCAATATACAGTCCAGCCTGAC  900

seq1  CTCGAACTTGCAAGGGTTCTCCAGCCTCTGCCTCCAGAGCTGGGGTTATA  949
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCG-ACTTGCAAGGGTTCTCCAGCCTCTGCCTCCAGAGCTGGGGTTATA  949

seq1  GGCACAAGCCACTAGGCCTGGTTCTACATGTGTAATTTTTTTTTCTAAGA  999
      ||||||||||||||||||||| ||||||||||| ||||||||||||||||
seq2  GGCACAAGCCACTAGGCCTGG-TCTACATGTGT-ATTTTTTTTTCTAAGA  997

seq1  CAAATACACACGCCTAAGTTGTAGATTCAGAAAGATGTATTTCTCTTTTA  1049
      | ||||||||||||||||| ||||| |||||||||||||||||||||| |
seq2  C-AATACACACGCCTAAGTGGTAGA-TCAGAAAGATGTATTTCTCTTTAA  1045

seq1  AGTGAAAACCTGGACTTTGGATGAATCCTAAGTCACTGG  1088
       ||||||  |||||| ||||||| |||  | ||||||||
seq2  GGTGAAA--CTGGACCTTGGATG-ATCTAAGGTCACTGG  1081