BAC Information

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BAC

Clone NameB6Ng01-255P16
Chromosome13 (Build37)
Map Location 20,541,398 - 20,643,972
singlet/doubletdoublet
Overlap geneElmo1
Upstream geneEpdr1, Sfrp4, Txndc3, A530099J19Rik, Gpr141, LOC432730
Downstream geneLOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-255P16.bB6Ng01-255P16.g
ACCGA062056GA062057
length1,1311,160
definitionB6Ng01-255P16.b B6Ng01-255P16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,642,825 - 20,643,972)(20,541,398 - 20,542,560)
sequence
gaattcagtgagttactcaaaacaatattctagaaagtggaaaagcaatg
ctatggacctgaaagttataactctcaggcttcttactgtctgctgtgca
ggcagggatgcccagtgatcaccccaagtgctctgtgggttaaaggaata
gccccatccaggtgggatgtccagaagacctctgtgagctgagcaggttc
atgaaagagggtaagatttctaaaaagaagaggggtggataggacttcta
agctgacggaaaggccactgctctgatcatttcagagtaaagtccaaggg
aaatgttgtaatggagtcaggagaactggatttgattcctggctcaatca
ctcaccatctgtgcatccttggtcaaatatctgacttgctctaagtctca
gattcacaataaactggacagtgcagtacaatccctcccccaatgattaa
aaaagagaatcttgttaagattctctgagggtgttggatacaaatggctg
gtgcttatttttcatttaggaagaactaggagtttgaagacaggttgaga
tcaaagtatggacacttggtgcagctacatggaatgatgcagtctgaaaa
tgatggtggaagtgcatgatatgtaaggatggatgataaaagccaaagac
tatcagcgaagcctaggcctgaggcccctggtatcaggaatttctgatca
taaggtgcatccttacatatttctgtattttctccaagtgagcttggatt
tccatgtcttttgatctgagtgttgttaccaggtttgtgagaaacccttt
ctccatacaataacgattttgtcttcaggaaatattcttaaagcctttgg
tccagcactatcactggaatgtaacactaacacagagggaggtgtttctg
ccagggacaaacatccacatgatggtaaagagaaaaggtatctatcctgt
aagtgaaataacttttaggaagttttgtgtttaatttgagctcatataaa
cacaatgcatttctctacatttaaaaccatcatatccctttcttacgctc
tactaaatgaatagaaagagaacaagagagatagtaagaactgatgtcag
cacttgccacgtaggaatgaaatgagaaaga
gaattcttctgcatttgcattcaactcctgaacaaaacatggaaggaaat
gagggcaacatctgaagacttcaacaaggtaacgggtgtggtcacccgcc
atctgacaggtctggggctcacgcctcagatgtggtatactatgttccct
cagctgtgcatagaagcagtgttcgagggaagagaaggaaaggagtgtga
ttttaaatcgcacccaaaatggaagcaaccactaggtatctgcttggggt
cgctttggcccctttgtctcagccaaggccaccaactgagaacctttctg
gagaaactctcctggtgattttttcctttgtggttttggtatgggatgct
ttgtcactggtttgaggctattaagtaaggcgtcatccctctatctgtgt
agaagacaaatggagagccagccaatacagaagacaactggctggtccat
tggtatgtttgtgtagtatggacaccttaagttcatatgactgcttctat
gtccaaataacaattatttctatgatggaggttctctctctctctctctc
tctctctctctctctcatctctatctctttctctatctctatctctatct
ctatctctatctctatctctatctctatctctatctatctctatagggtt
atatggaccatttcagaggacagcttgcctgagtagtcagttctttgctt
taattgtgttggttccaggtcttgaactcagttgctaggcttagtggcag
atgcttttaccctctcggccacctcaccagcatttgtttgttcttccatt
gtcattacttgtgggaatatgactttcctgctgcgatagatgtgagaatt
tccgggtcaacttagaggagtttgaaacagagtccctactttttagagat
taagaacatattttctcttttgcaacagacatgtataaacagtaatggcc
taattatgtctagttttagggtctggacaggtatagtttagcctgtaacc
gttgtaacatgacttctaacaagctcagcccttttgcttcaaacccactc
ttcctggtctagatcataacctatctaagaattgtgtgctacttctgtgg
cccttggtactagaataacatctgaacttctactcattttctcccgttac
ctctgtctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_20642825_20643972
seq2: B6Ng01-255P16.b_48_1178 (reverse)

seq1  TCTTTCTCATTTCATTTTCCTACGTGGCAGGTTGCTTGGACATCCATTTC  50
      ||||||||||||||  ||||||||||||| | ||||  ||||| || |||
seq2  TCTTTCTCATTTCA--TTCCTACGTGGCAAG-TGCT--GACAT-CAGTTC  44

seq1  TTTACTATTCTCTCTTTGGTCTCTTTCTA-TCATTTAAGTAGAGCGTAAG  99
       |||||| |||||| ||| |||||||||| |||||| |||||||||||||
seq2  -TTACTA-TCTCTC-TTGTTCTCTTTCTATTCATTT-AGTAGAGCGTAAG  90

seq1  AAAGGGATATGATGGTTTTTAAATTGTAGAGAAATGCCATTGTTGTTTTA  149
      |||||||||||||||||||  || |||||||||||| ||||| |||||  
seq2  AAAGGGATATGATGGTTTT--AAATGTAGAGAAATG-CATTG-TGTTT--  134

seq1  ATAATGAGCTCAAATTAAACACAAAACTTCCTAAAAGTTATTTCACTTTA  199
      || ||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AT-ATGAGCTCAAATTAAACACAAAACTTCCTAAAAGTTATTTCAC-TTA  182

seq1  CAGGATAGATACCTTTTCTCTTTACCATCATGTGGATGTTTGTCCCTGGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATAGATACCTTTTCTCTTTACCATCATGTGGATGTTTGTCCCTGGC  232

seq1  AGAAACACCTCCCTCTGTGTTAGTGTTACATTCCAGTGATAGTGCTGGAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACACCTCCCTCTGTGTTAGTGTTACATTCCAGTGATAGTGCTGGAC  282

seq1  CAAAGGCTTTAAGAATATTTCCTGAAGACAAAATCGTTATTGTATGGAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGCTTTAAGAATATTTCCTGAAGACAAAATCGTTATTGTATGGAGA  332

seq1  AAGGGTTTCTCACAAACCTGGTAACAACACTCAGATCAAAAGACATGGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTTTCTCACAAACCTGGTAACAACACTCAGATCAAAAGACATGGAA  382

seq1  ATCCAAGCTCACTTGGAGAAAATACAGAAATATGTAAGGATGCACCTTAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAGCTCACTTGGAGAAAATACAGAAATATGTAAGGATGCACCTTAT  432

seq1  GATCAGAAATTCCTGATACCAGGGGCCTCAGGCCTAGGCTTCGCTGATAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGAAATTCCTGATACCAGGGGCCTCAGGCCTAGGCTTCGCTGATAG  482

seq1  TCTTTGGCTTTTATCATCCATCCTTACATATCATGCACTTCCACCATCAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGCTTTTATCATCCATCCTTACATATCATGCACTTCCACCATCAT  532

seq1  TTTCAGACTGCATCATTCCATGTAGCTGCACCAAGTGTCCATACTTTGAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGACTGCATCATTCCATGTAGCTGCACCAAGTGTCCATACTTTGAT  582

seq1  CTCAACCTGTCTTCAAACTCCTAGTTCTTCCTAAATGAAAAATAAGCACC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACCTGTCTTCAAACTCCTAGTTCTTCCTAAATGAAAAATAAGCACC  632

seq1  AGCCATTTGTATCCAACACCCTCAGAGAATCTTAACAAGATTCTCTTTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTTGTATCCAACACCCTCAGAGAATCTTAACAAGATTCTCTTTTT  682

seq1  TAATCATTGGGGGAGGGATTGTACTGCACTGTCCAGTTTATTGTGAATCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCATTGGGGGAGGGATTGTACTGCACTGTCCAGTTTATTGTGAATCT  732

seq1  GAGACTTAGAGCAAGTCAGATATTTGACCAAGGATGCACAGATGGTGAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTTAGAGCAAGTCAGATATTTGACCAAGGATGCACAGATGGTGAGT  782

seq1  GATTGAGCCAGGAATCAAATCCAGTTCTCCTGACTCCATTACAACATTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAGCCAGGAATCAAATCCAGTTCTCCTGACTCCATTACAACATTTC  832

seq1  CCTTGGACTTTACTCTGAAATGATCAGAGCAGTGGCCTTTCCGTCAGCTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGACTTTACTCTGAAATGATCAGAGCAGTGGCCTTTCCGTCAGCTT  882

seq1  AGAAGTCCTATCCACCCCTCTTCTTTTTAGAAATCTTACCCTCTTTCATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTCCTATCCACCCCTCTTCTTTTTAGAAATCTTACCCTCTTTCATG  932

seq1  AACCTGCTCAGCTCACAGAGGTCTTCTGGACATCCCACCTGGATGGGGCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGCTCAGCTCACAGAGGTCTTCTGGACATCCCACCTGGATGGGGCT  982

seq1  ATTCCTTTAACCCACAGAGCACTTGGGGTGATCACTGGGCATCCCTGCCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTTAACCCACAGAGCACTTGGGGTGATCACTGGGCATCCCTGCCT  1032

seq1  GCACAGCAGACAGTAAGAAGCCTGAGAGTTATAACTTTCAGGTCCATAGC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCAGACAGTAAGAAGCCTGAGAGTTATAACTTTCAGGTCCATAGC  1082

seq1  ATTGCTTTTCCACTTTCTAGAATATTGTTTTGAGTAACTCACTGAATTC  1148
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTTTCCACTTTCTAGAATATTGTTTTGAGTAACTCACTGAATTC  1131

seq1: chr13_20541398_20542560
seq2: B6Ng01-255P16.g_69_1228

seq1  GAATTCTTCTGCATTTGCATTCAACTCCTGAACAAAACATGGAAGGAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGCATTTGCATTCAACTCCTGAACAAAACATGGAAGGAAAT  50

seq1  GAGGGCAACATCTGAAGACTTCAACAAGGTAACGGGTGTGGTCACCCGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCAACATCTGAAGACTTCAACAAGGTAACGGGTGTGGTCACCCGCC  100

seq1  ATCTGACAGGTCTGGGGCTCACGCCTCAGATGTGGTATACTATGTTCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGACAGGTCTGGGGCTCACGCCTCAGATGTGGTATACTATGTTCCCT  150

seq1  CAGCTGTGCATAGAAGCAGTGTTCGAGGGAAGAGAAGGAAAGGAGTGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTGCATAGAAGCAGTGTTCGAGGGAAGAGAAGGAAAGGAGTGTGA  200

seq1  TTTTAAATCGCACCCAAAATGGAAGCAACCACTAGGTATCTGCTTGGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATCGCACCCAAAATGGAAGCAACCACTAGGTATCTGCTTGGGGT  250

seq1  CGCTTTGGCCCCTTTGTCTCAGCCAAGGCCACCAACTGAGAACCTTTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTTGGCCCCTTTGTCTCAGCCAAGGCCACCAACTGAGAACCTTTCTG  300

seq1  GAGAAACTCTCCTGGTGATTTTTTCCTTTGTGGTTTTGGTATGGGATGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACTCTCCTGGTGATTTTTTCCTTTGTGGTTTTGGTATGGGATGCT  350

seq1  TTGTCACTGGTTTGAGGCTATTAAGTAAGGCGTCATCCCTCTATCTGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCACTGGTTTGAGGCTATTAAGTAAGGCGTCATCCCTCTATCTGTGT  400

seq1  AGAAGACAAATGGAGAGCCAGCCAATACAGAAGACAACTGGCTGGTCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACAAATGGAGAGCCAGCCAATACAGAAGACAACTGGCTGGTCCAT  450

seq1  TGGTATGTTTGTGTAGTATGGACACCTTAAGTTCATATGACTGCTTCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATGTTTGTGTAGTATGGACACCTTAAGTTCATATGACTGCTTCTAT  500

seq1  GTCCAAATAACAATTATTTCTATGATGGAGGTTCTCTCTCTCTCTCTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAATAACAATTATTTCTATGATGGAGGTTCTCTCTCTCTCTCTCTC  550

seq1  TCTCTCTCTCTCTCTCATCTCTATCTCTTTCTCTATCTCTATCTCTATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCATCTCTATCTCTTTCTCTATCTCTATCTCTATCT  600

seq1  CTATCTCTATCTCTATCTCTATCTCTATCTCTATCTATCTCTATAGGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTCTATCTCTATCTCTATCTCTATCTCTATCTATCTCTATAGGGTT  650

seq1  ATATGGACCATTTCAGAGGACAGCTTGCCTGAGTAGTCAGTTCTTTGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGACCATTTCAGAGGACAGCTTGCCTGAGTAGTCAGTTCTTTGCTT  700

seq1  TAATTGTGTTGGTTCCAGGTCTTGAACTCAGGTTGCTAGGCTTAGTGGCA  750
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TAATTGTGTTGGTTCCAGGTCTTGAACTCA-GTTGCTAGGCTTAGTGGCA  749

seq1  GATGCTTTTACCCTCTCGGCCACCTCACCAGCATTTGTTTGTTCTTCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTTTTACCCTCTCGGCCACCTCACCAGCATTTGTTTGTTCTTCCAT  799

seq1  TGTCATTACTTGTGGGAATATGACTTTCCTGCTGCGATAGATGTGAGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTACTTGTGGGAATATGACTTTCCTGCTGCGATAGATGTGAGAAT  849

seq1  TTCCGGGTCAACTTAGAGGAGTTTGAAACAGAGTCCCTAC-TTTTAGAGA  899
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTCCGGGTCAACTTAGAGGAGTTTGAAACAGAGTCCCTACTTTTTAGAGA  899

seq1  TTAAGAACATA-TTTCTC-TTTGCAACAGACATGTAT-AACAGTAATGG-  945
      ||||||||||| |||||| |||||||||||||||||| ||||||||||| 
seq2  TTAAGAACATATTTTCTCTTTTGCAACAGACATGTATAAACAGTAATGGC  949

seq1  CTAATTATGTCTAGTTTTAGGGTCTGGACAGGTATAGTTTAGCCTGTAAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTATGTCTAGTTTTAGGGTCTGGACAGGTATAGTTTAGCCTGTAAC  999

seq1  CGTTGTAACATGACTCTAAACAAGGCTCCAGCCC-TTTGC-TCAAACCCA  1043
      |||||||||||||||   ||||| ||| |||||| ||||| |||||||||
seq2  CGTTGTAACATGACTTCTAACAA-GCT-CAGCCCTTTTGCTTCAAACCCA  1047

seq1  CTC-TCCTGGTTCTAAGGATCATAA-CTATCTAAGAATTTGGTGTGCTAC  1091
      ||| |||||| ||||  |||||||| |||||||||||||  |||||||||
seq2  CTCTTCCTGG-TCTA--GATCATAACCTATCTAAGAATT--GTGTGCTAC  1092

seq1  TTCTGTGG-CCTTGGGACATAG-ATAACATCTAAACTTCTAACTTCATTT  1139
      |||||||| |||||| || ||| ||||||||| ||||||||   ||| ||
seq2  TTCTGTGGCCCTTGGTAC-TAGAATAACATCTGAACTTCTA--CTCA-TT  1138

seq1  TTCTCCCTGTTACCTTCTGTCTGA  1163
      ||||||| |||||| |||||||||
seq2  TTCTCCC-GTTACC-TCTGTCTGA  1160