BAC Information

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BAC

Clone NameB6Ng01-257I04
Chromosome13 (Build37)
Map Location 115,931,658 - 116,099,283
singlet/doubletdoublet
Overlap genenone
Upstream geneArl15, A430090L17Rik, Ndufs4, LOC100040958, Fst, 4930467J12Rik, Mocs2, Itga2, LOC100040975, Itga1, Pelo
Downstream geneLOC100041023, LOC547402, LOC100041045, EG623174, Isl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-257I04.bB6Ng01-257I04.g
ACCGA063191GA063192
length6311,140
definitionB6Ng01-257I04.b B6Ng01-257I04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,931,658 - 115,932,286)(116,098,139 - 116,099,283)
sequence
gaattctccagctctatacatcaagatattactttgttctcacattatgt
ttttgtttataaaaattgtatcttttgttccccattctaaggagggatga
agtatccacactttggtcttccttcttcttgagtttcatgtgttttgcaa
agattatatgccccagtacaggggaatgccagggccaagaagtgggagtg
ggtgggttggggagcagggcgagggctgagagggtagaggggactttcgg
gacagcatttgaaatgtaaatgaggaaaatttctaataaaaattgtgtta
aaaattgtatcttttgtgtttctaatttgtgaattttaaaataaatttcc
acattcttattgtgcctatatgtctagatatttgtcatccactaacctat
ctctatagatcatttaactactaatcattgcctgtctatctatcacttac
ctaccaatcattacctgtctatagattgtttacctacttatcatcatgat
gttggcatttttgtttttacttaacccattttccattgttttttcaacaa
aaatacttccccatgtctaggaaattcagtattgactttgcatacaattt
ggcttccaagatgtgactaggcttctgtaat
gaattctctcaggcactaaataaattattgtttgcaggcatgatggtgag
ttttaaaagaaaatttactgagcagactttgttcagcatgaaaattagga
tcagaaaccctatgtgtctgcaccacagaaataaaagcacagtgctgttg
aaagggaagattcacaaccaaatgtcagaataagactgtgttgagcctat
gccatttaagacgtagacaccacagcagctccttacaaaagacaggagga
agctgcacttatctggctctattcaagtctctcagaacaagccaatttga
ggataaaatctgatgaagacaagtgtcacaattagataaaggacatttca
cagttgtgggggaaaaaaacctaacagaacacatcatactgggaaaactg
actgttgataaatggttattaatgattattttaaatgcccgacttcatgt
attcaacaaaagtgaatctgatgtaatagtaaaaccgtacactttcgtac
acaatcagctccagtggtatagcacttattaatattagttcataaaagta
aaaggaattgtctctgttctcagataatccgctagctctttttttttatt
cgagactgaaaaatatcaatttaatagtataatctgatgtgcggccttga
actttagtacactaaggatttttgaaaaactctagctctcaacagataaa
attttgatcagaatgtatttgaaaaagcaaagtaaccacaatttaatttc
ttaaaaaccaagcaaccctccccccctcaaaaatcaagaattatgtaaaa
cattcaaaagcccctaccagctagcattataacataatgaaatcatttgt
gttagtacgttcattacattctaattatccatttcatcctaaatagagaa
actgggcgtttgagagaaattcttaatttaagacattttttttaagtgtc
agaaacagattgaaagcttttcatttcgtgctttgttgaaaatttatagg
ccccctctaagaaggaattgtgggcttaagagttccagcttgagacatgg
ctcttcatatgcactgctctttgctttgagcgctgaccacaggtcactct
catttctgtcagcctcaagccttctgttctctccagtgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_115931658_115932286
seq2: B6Ng01-257I04.b_48_678

seq1  GAATTCTCCAGCTCTATACATCAAGATATTACTTTGTTCTCACATTATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAGCTCTATACATCAAGATATTACTTTGTTCTCACATTATGT  50

seq1  TTTTGTTTATAAAAATTGTATCTTTTGTTCCCCATTCTAAGGAGGGATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTATAAAAATTGTATCTTTTGTTCCCCATTCTAAGGAGGGATGA  100

seq1  AGTATCCACACTTTGGTCTTCCTTCTTCTTGAGTTTCATGTGTTTTGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCCACACTTTGGTCTTCCTTCTTCTTGAGTTTCATGTGTTTTGCAA  150

seq1  AGATTATATGCCCCAGTACAGGGGAATGCCAGGGCCAAGAAGTGGGAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATATGCCCCAGTACAGGGGAATGCCAGGGCCAAGAAGTGGGAGTG  200

seq1  GGTGGGTTGGGGAGCAGGGCGAGGGCTGAGAGGGTAGAGGGGACTTTCGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGTTGGGGAGCAGGGCGAGGGCTGAGAGGGTAGAGGGGACTTTCGG  250

seq1  GACAGCATTTGAAATGTAAATGAGGAAAATTTCTAATAAAAATTGTGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCATTTGAAATGTAAATGAGGAAAATTTCTAATAAAAATTGTGTTA  300

seq1  AAAATTGTATCTTTTGTGTTTCTAATTTGTGAATTTTAAAATAAATTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGTATCTTTTGTGTTTCTAATTTGTGAATTTTAAAATAAATTTCC  350

seq1  ACATTCTTATTGTGCCTATATGTCTAGATATTTGTCATCCACTAACCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTTATTGTGCCTATATGTCTAGATATTTGTCATCCACTAACCTAT  400

seq1  CTCTATAGATCATTTAACTACTAATCATTGCCTGTCTATCTATCACTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATAGATCATTTAACTACTAATCATTGCCTGTCTATCTATCACTTAC  450

seq1  CTACCAATCATTACCTGTCTATAGATTGTTTACCTACTTATCATCATGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAATCATTACCTGTCTATAGATTGTTTACCTACTTATCATCATGAT  500

seq1  GTTGGCATTTTTGTTTTTACTTAACCCATTTTCCATTG-TTTTTCAACAA  549
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GTTGGCATTTTTGTTTTTACTTAACCCATTTTCCATTGTTTTTTCAACAA  550

seq1  AAATACTTCCCCATGTCTAGGAAATTCAGTATTGACTTTGCATACAATTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTTCCCCATGTCTAGGAAATTCAGTATTGACTTTGCATACAATTT  600

seq1  GGCTTCCAAGATGTGACTAGGC-TCTGTAAT  629
      |||||||||||||||||||||| ||||||||
seq2  GGCTTCCAAGATGTGACTAGGCTTCTGTAAT  631

seq1: chr13_116098139_116099283
seq2: B6Ng01-257I04.g_65_1204 (reverse)

seq1  GTCACTGGAGAAGAACAGAAGCTTTGAGGCTGACAGAAATGAAGAGGTGA  50
      |||||||||| ||||||||||  |||||||||||||||||| ||| ||||
seq2  GTCACTGGAG-AGAACAGAAGGCTTGAGGCTGACAGAAATG-AGA-GTGA  47

seq1  CTTGTGGGCCAGCGCTTCAAAGCAAGGAGCAGGTGCATATGAAGAGCCAT  100
      | ||| || |||||| ||||||||| ||||| ||||||||||||||||||
seq2  CCTGT-GGTCAGCGC-TCAAAGCAAAGAGCA-GTGCATATGAAGAGCCAT  94

seq1  GTCCTCCAGCTGGGACTC-TAAGCCCACATTTCTTTCCTTAGA-GGGGCC  148
      || ||| |||||| |||| |||||||||| ||| || |||||| ||||||
seq2  GT-CTCAAGCTGGAACTCTTAAGCCCACAATTCCTT-CTTAGAGGGGGCC  142

seq1  TAT-AATTTTC-ACAAAGCACGAAATGAAAAGCTTTCAATCTGTTTCTGA  196
      ||| ||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TATAAATTTTCAACAAAGCACGAAATGAAAAGCTTTCAATCTGTTTCTGA  192

seq1  CACTTAAAAAAAAATGTCTTAAATTAAGAATTTCTCTCAAACGCCCAGTT  246
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTT-AAAAAAAATGTCTTAAATTAAGAATTTCTCTCAAACGCCCAGTT  241

seq1  TCTCTATTTAGGATGAAATGGATAATTAGAATGTAATGAACGTACTAACA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATTTAGGATGAAATGGATAATTAGAATGTAATGAACGTACTAACA  291

seq1  CAAATGATTTCATTATGTTATAATGCTAGCTGGTAGGGGCTTTTGAATGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGATTTCATTATGTTATAATGCTAGCTGGTAGGGGCTTTTGAATGT  341

seq1  TTTACATAATTCTTGATTTTTGAGGGGGGGAGGGTTGCTTGGTTTTTAAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATAATTCTTGATTTTTGAGGGGGGGAGGGTTGCTTGGTTTTTAAG  391

seq1  AAATTAAATTGTGGTTACTTTGCTTTTTCAAATACATTCTGATCAAAATT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAATTGTGGTTACTTTGCTTTTTCAAATACATTCTGATCAAAATT  441

seq1  TTATCTGTTGAGAGCTAGAGTTTTTCAAAAATCCTTAGTGTACTAAAGTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGTTGAGAGCTAGAGTTTTTCAAAAATCCTTAGTGTACTAAAGTT  491

seq1  CAAGGCCGCACATCAGATTATACTATTAAATTGATATTTTTCAGTCTCGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCCGCACATCAGATTATACTATTAAATTGATATTTTTCAGTCTCGA  541

seq1  ATAAAAAAAAAGAGCTAGCGGATTATCTGAGAACAGAGACAATTCCTTTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAAAAAGAGCTAGCGGATTATCTGAGAACAGAGACAATTCCTTTT  591

seq1  ACTTTTATGAACTAATATTAATAAGTGCTATACCACTGGAGCTGATTGTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTATGAACTAATATTAATAAGTGCTATACCACTGGAGCTGATTGTG  641

seq1  TACGAAAGTGTACGGTTTTACTATTACATCAGATTCACTTTTGTTGAATA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGAAAGTGTACGGTTTTACTATTACATCAGATTCACTTTTGTTGAATA  691

seq1  CATGAAGTCGGGCATTTAAAATAATCATTAATAACCATTTATCAACAGTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGTCGGGCATTTAAAATAATCATTAATAACCATTTATCAACAGTC  741

seq1  AGTTTTCCCAGTATGATGTGTTCTGTTAGGTTTTTTTCCCCCACAACTGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCCCAGTATGATGTGTTCTGTTAGGTTTTTTTCCCCCACAACTGT  791

seq1  GAAATGTCCTTTATCTAATTGTGACACTTGTCTTCATCAGATTTTATCCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTCCTTTATCTAATTGTGACACTTGTCTTCATCAGATTTTATCCT  841

seq1  CAAATTGGCTTGTTCTGAGAGACTTGAATAGAGCCAGATAAGTGCAGCTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTGGCTTGTTCTGAGAGACTTGAATAGAGCCAGATAAGTGCAGCTT  891

seq1  CCTCCTGTCTTTTGTAAGGAGCTGCTGTGGTGTCTACGTCTTAAATGGCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGTCTTTTGTAAGGAGCTGCTGTGGTGTCTACGTCTTAAATGGCA  941

seq1  TAGGCTCAACACAGTCTTATTCTGACATTTGGTTGTGAATCTTCCCTTTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTCAACACAGTCTTATTCTGACATTTGGTTGTGAATCTTCCCTTTC  991

seq1  AACAGCACTGTGCTTTTATTTCTGTGGTGCAGACACATAGGGTTTCTGAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCACTGTGCTTTTATTTCTGTGGTGCAGACACATAGGGTTTCTGAT  1041

seq1  CCTAATTTTCATGCTGAACAAAGTCTGCTCAGTAAATTTTCTTTTAAAAC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATTTTCATGCTGAACAAAGTCTGCTCAGTAAATTTTCTTTTAAAAC  1091

seq1  TCACCATCATGCCTGCAAACAATAATTTATTTAGTGCCTGAGAGAATTC  1145
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCATCATGCCTGCAAACAATAATTTATTTAGTGCCTGAGAGAATTC  1140