BAC Information

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BAC

Clone NameB6Ng01-258J16
Chromosome13 (Build37)
Map Location 117,838,566 - 117,950,885
singlet/doubletdoublet
Overlap geneLOC668288, LOC623312
Upstream geneEG623174, Isl1, EG668276, Gm280, LOC100041169, Parp8
Downstream geneEmb, EG623365, LOC382807, Hcn1, LOC100041695, LOC674926
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258J16.bB6Ng01-258J16.g
ACCGA064002GA064003
length1,093349
definitionB6Ng01-258J16.b B6Ng01-258J16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,949,789 - 117,950,885)(117,838,566 - 117,838,920)
sequence
gaattcaataaggttgctgtatctataagggaggagtcagaggagggcag
tctataatcccagtacttgggagacagggacaggaagatcactgcaactt
gaatctaacctggtcgacatagtaagtcttgctttaaacaacaattaaaa
aaacaaaaaaacaaaaaacaacaacaacaaaaaaaaaaaaagccaaagga
tcaaaaatgaaacctattgagaagggcagaacagtaagacaagaaaacta
aattttttaaaaaagaaagatgtagcacgtaatctcctattctgctcaac
gctttggttgcttaatttaccaggggacagaaaataaagcagagatagaa
tacagaatacaaatatgacaactacctttccatggcttgtacaagaccca
aaccatgacatggagacttgagaaaagaggaagaaaaacaaaacaaaaca
aaacaaaacaaaacaaacaaaacaaaacaaacaaaacaagggaattttat
cctgtggagtaggaagaaaaaaaagatctgaagaagtagaaacgtgtctg
gtggtggtgacattcacctttaatcccagcatttagggagcagaggcagg
cggatcttttggatctctgtgagtttgaggacagcctggtctacagaatg
aatttcaggacttccaggactacccagagaaaccctgcctcaaataaaca
aacaaccaacgccccccaacccttcacaatggaagaagtaaaaacacgta
agtaacttaacttattattcttttctattttcaggaattacgttttaaaa
gatttaaccagatagtaggaagcaccagatttttaaaagtctaacatggg
tttatagtttaatcattaaatttttttccagttatttactaaaatctatt
tacttgtttgaataactcggaagaggaaatgaccagttttccctatcatg
taaaaaaaaaaaaaaaaaacccaaaaaccaaacagaattattgtatgtat
caatcttcagaatttagacaaaagtcgaggagcagtcacggtcacagtca
cagcgactgactctacatgcttgctctcgagctctgtaagaac

actccccagcgcccatataatgaaaagagagaacttaactccttcaactt
gccctttgacctccacacttacactgaagcatgcacataccatggcaggt
gcataccagtaggcaagtagacatacagacacatgcatgctcacatacat
aaatgtaataagatagaaagattttaaagcaggccttgaactcctaaaag
ggctgggattacaggttgtgccaccatgtccagttacagactctctctgc
tctgtccctgattctgtctgtctatctgcctctctctttctctctttctc
tctttctctctctctctctctctctctctctctctctctctctctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_117949789_117950885
seq2: B6Ng01-258J16.b_51_1143 (reverse)

seq1  GTTCCTACAGAGCCTCTGAGAGCCAGCATTGTAGAGTTCAGTCGCTGTGA  50
      |||| ||||||| ||| |||||| |||| ||||||| |||||||||||||
seq2  GTTCTTACAGAG-CTC-GAGAGCAAGCA-TGTAGAG-TCAGTCGCTGTGA  46

seq1  CTGTGACCGTGACTGGCTTCCTCGACTTTTGTCTAAATTCTGAAGATTGA  100
      |||||||||||||||   ||||||||||||||||||||||||||||||||
seq2  CTGTGACCGTGACTG--CTCCTCGACTTTTGTCTAAATTCTGAAGATTGA  94

seq1  TAACATACA--TATTCTGTTTGGTTTTTTGG-GTTTTTTTTTTTTTTTTA  147
      | |||||||   |||||||||||||||| ||  |||||||||||||||||
seq2  T-ACATACAATAATTCTGTTTGGTTTTTGGGTTTTTTTTTTTTTTTTTTA  143

seq1  CATGATAGGAAAAACTGGTCATTTTCCTCCTTCCGAGTTA-TCAAACAAG  196
      ||||||||| ||||||||||| |||||| ||||||||||| |||||||||
seq2  CATGATAGGGAAAACTGGTCA-TTTCCT-CTTCCGAGTTATTCAAACAAG  191

seq1  TAAAATAGATTTTAGTAAATAACTGG-AAAAAATTTAATGATTAAACTAT  245
      | |||||||||||||||||||||||| |||||||||||||||||||||||
seq2  T-AAATAGATTTTAGTAAATAACTGGAAAAAAATTTAATGATTAAACTAT  240

seq1  AAA-CCATGTTAGACTTTTAAAAATCTGGTGCTTCCTACTATCTGGTTAA  294
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCATGTTAGACTTTTAAAAATCTGGTGCTTCCTACTATCTGGTTAA  290

seq1  ATCTTTTAAAACGTAATTCCTGAAAATAGAAAAGAATAATAAGTTAAGTT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTAAAACGTAATTCCTGAAAATAGAAAAGAATAATAAGTTAAGTT  340

seq1  ACTTACGTGTTTTTACTTCTTCCATTGTGAAGGGTTGGGGGGCGTTGGTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACGTGTTTTTACTTCTTCCATTGTGAAGGGTTGGGGGGCGTTGGTT  390

seq1  GTTTGTTTATTTGAGGCAGGGTTTCTCTGGGTAGTCCTGGAAGTCCTGAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTATTTGAGGCAGGGTTTCTCTGGGTAGTCCTGGAAGTCCTGAA  440

seq1  ATTCATTCTGTAGACCAGGCTGTCCTCAAACTCACAGAGATCCAAAAGAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTCTGTAGACCAGGCTGTCCTCAAACTCACAGAGATCCAAAAGAT  490

seq1  CCGCCTGCCTCTGCTCCCTAAATGCTGGGATTAAAGGTGAATGTCACCAC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCTGCCTCTGCTCCCTAAATGCTGGGATTAAAGGTGAATGTCACCAC  540

seq1  CACCAGACACGTTTCTACTTCTTCAGATCTTTTTTTTCTTCCTACTCCAC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGACACGTTTCTACTTCTTCAGATCTTTTTTTTCTTCCTACTCCAC  590

seq1  AGGATAAAATTCCCTTGTTTTGTTTGTTTTGTTTTGTTTGTTTTGTTTTG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAAAATTCCCTTGTTTTGTTTGTTTTGTTTTGTTTGTTTTGTTTTG  640

seq1  TTTTGTTTTGTTTTGTTTTTCTTCCTCTTTTCTCAAGTCTCCATGTCATG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTGTTTTGTTTTTCTTCCTCTTTTCTCAAGTCTCCATGTCATG  690

seq1  GTTTGGGTCTTGTACAAGCCATGGAAAGGTAGTTGTCATATTTGTATTCT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGGTCTTGTACAAGCCATGGAAAGGTAGTTGTCATATTTGTATTCT  740

seq1  GTATTCTATCTCTGCTTTATTTTCTGTCCCCTGGTAAATTAAGCAACCAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCTATCTCTGCTTTATTTTCTGTCCCCTGGTAAATTAAGCAACCAA  790

seq1  AGCGTTGAGCAGAATAGGAGATTACGTGCTACATCTTTCTTTTTTAAAAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTTGAGCAGAATAGGAGATTACGTGCTACATCTTTCTTTTTTAAAAA  840

seq1  ATTTAGTTTTCTTGTCTTACTGTTCTGCCCTTCTCAATAGGTTTCATTTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTTTTCTTGTCTTACTGTTCTGCCCTTCTCAATAGGTTTCATTTT  890

seq1  TGATCCTTTGGCTTTTTTTTTTTTTGTTGTTGTTGTTTTTTGTTTTTTTG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCTTTGGCTTTTTTTTTTTTTGTTGTTGTTGTTTTTTGTTTTTTTG  940

seq1  TTTTTTTAATTGTTGTTTAAAGCAAGACTTACTATGTCGACCAGGTTAGA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAATTGTTGTTTAAAGCAAGACTTACTATGTCGACCAGGTTAGA  990

seq1  TTCAAGTTGCAGTGATCTTCCTGTCCCTGTCTCCCAAGTACTGGGATTAT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTTGCAGTGATCTTCCTGTCCCTGTCTCCCAAGTACTGGGATTAT  1040

seq1  AGACTGCCCTCCTCTGACTCCTCCCTTATAGATACAGCAACCTTATTGAA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGCCCTCCTCTGACTCCTCCCTTATAGATACAGCAACCTTATTGAA  1090

seq1  TTC  1097
      |||
seq2  TTC  1093


seq1: chr13_117838566_117838920
seq2: B6Ng01-258J16.g_67_421

seq1  GAATTCACTCCCCAGCGCCCATATAATGAAAAGAGAGAACTTAACTCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCCCCAGCGCCCATATAATGAAAAGAGAGAACTTAACTCCTT  50

seq1  CAACTTGCCCTTTGACCTCCACACTTACACTGAAGCATGCACATACCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTGCCCTTTGACCTCCACACTTACACTGAAGCATGCACATACCATG  100

seq1  GCAGGTGCATACCAGTAGGCAAGTAGACATACAGACACATGCATGCTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGCATACCAGTAGGCAAGTAGACATACAGACACATGCATGCTCAC  150

seq1  ATACATAAATGTAATAAGATAGAAAGATTTTAAAGCAGGCCTTGAACTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATAAATGTAATAAGATAGAAAGATTTTAAAGCAGGCCTTGAACTCC  200

seq1  TAAAAGGGCTGGGATTACAGGTTGTGCCACCATGTCCAGTTACAGACTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGGCTGGGATTACAGGTTGTGCCACCATGTCCAGTTACAGACTCT  250

seq1  CTCTGCTCTGTCCCTGATTCTGTCTGTCTATCTGCCTCTCTCTTTCTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTCTGTCCCTGATTCTGTCTGTCTATCTGCCTCTCTCTTTCTCTC  300

seq1  TTTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  350

seq1  TCTCT  355
      |||||
seq2  TCTCT  355


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