BAC Information

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BAC

Clone NameB6Ng01-258L04
Chromosome13 (Build37)
Map Location 76,845,017 - 76,971,314
singlet/doubletdoublet
Overlap geneMctp1
Upstream geneEll2, LOC666786, Glrx, Rhobtb3, LOC666553, LOC622313, Spata9, Rfesd, LOC100043008, Gpr150, Arsk, AK129128, Gm276, LOC666603
Downstream geneEG666607, Ankrd32, 2210408I21Rik, LOC631139, LOC675063, D13Mgi7, 1110033M05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258L04.bB6Ng01-258L04.g
ACCGA064070GA064071
length990937
definitionB6Ng01-258L04.b B6Ng01-258L04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,845,017 - 76,845,571)(76,970,329 - 76,971,314)
sequence
gaattccaaatagacagaaccagaaaatagatttttcataaaacataact
agataatagccttccagtctgagccagtgccctaagcagaccttgggtgc
tagctccacacccagtcccacaacacccagaagaagctcgactcccagga
gctctaacacacccaggatcacaggatctcaggagcttgacacaagagga
tttcaggattccagaggcagctggactcccaggatctctgacacacccag
gatcacaggatctcagagacagctggactctgaggagttctgacgtaatc
aggatcacaggagggacaggctctagtcatagacagcaagggcaggtaac
actagagataaccatattgtgagaggcaagtgtaaaaacatagacaaaat
aaaccaaggttacatggcaccatcagaatccagttctcccaccatagcaa
gtcctggataccccatcacatgggaaaagcaatatttggatctaaaatca
cttctcatgatgatgatagaggaatttaaaaaagacataaataactccct
ctaaaaaatacaggcaaacacaggtaaacaagtagaaactcttcaaggga
aaacacaaaaatcccttaaagaataacaggaaaacacaaataaacaggtg
aaggaattgaaaaaaaatccaggatctaaaaatggaaatagaaacaataa
agaaatcacaatgggagacaaccctagagatagaaaacctataaaagaga
tcaggagtcatagatgcaagcatcacaaacagaatacaagagatagaaga
gaaaaatctcaggtgcagaagatactatgaaaaacattgacacaacagtt
aaaatacaaaatgcaaaaaactcctacccaaaaacatccaagaaatcaag
gacacaatgagaaaagcaaaccctaaaggataatagctatggaagacagt
gaagattcctaacttaagaaacagtaaaaatcttcaacaa
gaattctatttgtaaacacagagagagagacagggacagagacacacaga
gacagagagaagaagaagaaggaggaggaggaggaggaggaggaggagga
ggaggaggaagaagaagaagaagaagaagaagaagaagaagaagaagaag
aagaagaagaagaagaagaaagaaagaaagaaagaaagaaagaaagaaag
aaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaa
agaaagaaagaaagaaagaaagaaagaaaaaagggaaaaccacggctaga
atccagaatcttactagaaagcctgctggggctggtcaggagaaaaagag
tcaaagctagtagctactatttttatggccaatggttatgcattcaacac
accattttgtagtttaagtgctgtgagaagctgatatcttgtcataattc
atgctcattgttccactaagtaaaatatatgtttgcagttagttattctg
tgtgaattgtactttaaaggcagaagacatttttgataatgcacatctta
agactttcattaagttgcagttaattctacctatgtgcactctgacatgt
gtctggcattcattaattgcgacatacataatgtagctgatgttaactga
tcaatacttgtctctctcgtggagcaccatgttcattccctagaccacac
agccgacagaaattaaatgtgtatatcaaatgttaatgttaaatacagcc
gcacttacactataatgacagaatgctaaacaattccaaatggacagatg
gtacacaattatctacatcacattaagatgaagtttgtctgtaatattct
ctgacgcacactgagtgtgtctttactgatagctcagattctcgtatttg
tgctcatacagtgagaatgacagtatgaaagacgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_76845017_76845571
seq2: B6Ng01-258L04.b_43_597

seq1  GAATTCCAAATAGACAGAACCAGAAAATAGATTTTTCATAAAACATAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAATAGACAGAACCAGAAAATAGATTTTTCATAAAACATAACT  50

seq1  AGATAATAGCCTTCCAGTCTGAGCCAGTGCCCTAAGCAGACCTTGGGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATAGCCTTCCAGTCTGAGCCAGTGCCCTAAGCAGACCTTGGGTGC  100

seq1  TAGCTCCACACCCAGTCCCACAACACCCAGAAGAAGCTCGACTCCCAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCCACACCCAGTCCCACAACACCCAGAAGAAGCTCGACTCCCAGGA  150

seq1  GCTCTAACACACCCAGGATCACAGGATCTCAGGAGCTTGACACAAGAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAACACACCCAGGATCACAGGATCTCAGGAGCTTGACACAAGAGGA  200

seq1  TTTCAGGATTCCAGAGGCAGCTGGACTCCCAGGATCTCTGACACACCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGATTCCAGAGGCAGCTGGACTCCCAGGATCTCTGACACACCCAG  250

seq1  GATCACAGGATCTCAGAGACAGCTGGACTCTGAGGAGTTCTGACGTAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACAGGATCTCAGAGACAGCTGGACTCTGAGGAGTTCTGACGTAATC  300

seq1  AGGATCACAGGAGGGACAGGCTCTAGTCATAGACAGCAAGGGCAGGTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCACAGGAGGGACAGGCTCTAGTCATAGACAGCAAGGGCAGGTAAC  350

seq1  ACTAGAGATAACCATATTGTGAGAGGCAAGTGTAAAAACATAGACAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAGATAACCATATTGTGAGAGGCAAGTGTAAAAACATAGACAAAAT  400

seq1  AAACCAAGGTTACATGGCACCATCAGAATCCAGTTCTCCCACCATAGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAGGTTACATGGCACCATCAGAATCCAGTTCTCCCACCATAGCAA  450

seq1  GTCCTGGATACCCCATCACATGGGAAAAGCAATATTTGGATCTAAAATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGATACCCCATCACATGGGAAAAGCAATATTTGGATCTAAAATCA  500

seq1  CTTCTCATGATGATGATAGAGGAATTTAAAAAAGACATAAATAACTCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCATGATGATGATAGAGGAATTTAAAAAAGACATAAATAACTCCCT  550

seq1  CTAAA  555
      |||||
seq2  CTAAA  555

seq1: chr13_76970329_76971314
seq2: B6Ng01-258L04.g_70_1006 (reverse)

seq1  TTTCGTTCTTTTCAATACTGTCATTTCTCACTGTAATGAGCACAAAAATA  50
      ||||| |||||   ||||||||| |||||||||| |||||||||||    
seq2  TTTCG-TCTTT--CATACTGTCA-TTCTCACTGT-ATGAGCACAAA---T  42

seq1  ACGAGAAATCTGAGCTATCAGTAAAAGGACACACTTCAGTGTGCGTCAGA  100
      ||||| |||||||||||||||||||  ||||||| |||||||||||||||
seq2  ACGAG-AATCTGAGCTATCAGTAAA--GACACAC-TCAGTGTGCGTCAGA  88

seq1  GAATTATTTTACAGGACAAACTTTCATCTTTAAATGTGATTGTAGATAAT  150
      ||   || ||||| ||||||| ||||||||  ||||||| ||||||||| 
seq2  GA---ATATTACA-GACAAAC-TTCATCTT--AATGTGA-TGTAGATAA-  129

seq1  TTGTGGTACCATCTGTCCATTTGGAATTGTTTTAGCCTTTTCTGTCATTA  200
      |||| |||||||||||||||||||||||| ||||||   |||||||||||
seq2  TTGT-GTACCATCTGTCCATTTGGAATTG-TTTAGC--ATTCTGTCATTA  175

seq1  TAGTGTAAGTGCGGCTGTATTTAACATTAACATTTGATATTTTACACATT  250
      |||||||||||||||||||||||||||||||||||||||   ||||||||
seq2  TAGTGTAAGTGCGGCTGTATTTAACATTAACATTTGATA---TACACATT  222

seq1  TAATTTCTGTTCGGCTGTGTGGTCCCTAGGGAATGAACCCCTGGTGCTCC  300
      ||||||||| |||||||||||||  ||||||||||||  | |||||||||
seq2  TAATTTCTG-TCGGCTGTGTGGT--CTAGGGAATGAA--CATGGTGCTCC  267

seq1  ACGAGAGAGACAAAGTATTGATCAGTTAACATTTCAGCTACATTTATGTA  350
      ||||||||||| |||||||||||||||||||  ||||||||| |||||||
seq2  ACGAGAGAGAC-AAGTATTGATCAGTTAACA--TCAGCTACA-TTATGTA  313

seq1  TGTCGCAAAATTAATGAAAATGCCAGACAAAAAATGTCAGAGTGCACAAA  400
      ||||||  ||||||||  ||||||||||   | ||||||||||||||  |
seq2  TGTCGC--AATTAATG--AATGCCAGAC---ACATGTCAGAGTGCAC--A  354

seq1  AAGGTAGAATTTAAATTTGCAACTTTAATGAAAAGTCTTAAGATGTGCAT  450
       ||||||||||   |  |||||| |||||| |||||||||||||||||||
seq2  TAGGTAGAATT---AACTGCAAC-TTAATG-AAAGTCTTAAGATGTGCAT  399

seq1  TATCAAAAATGTCTTCTTGCCTTTAAAGTACAATTTCACACAGAATAACT  500
      |||||||||||||||| |||||||||||||||| ||||||||||||||||
seq2  TATCAAAAATGTCTTC-TGCCTTTAAAGTACAA-TTCACACAGAATAACT  447

seq1  AACTGCAAACATATATTTTACTTAGTGGAACAATGAGCATGAATTATGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCAAACATATATTTTACTTAGTGGAACAATGAGCATGAATTATGAC  497

seq1  AAGATATCAGCTTCTCACAGCACTTAAACTACAAAATGGTGTGTTGAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATCAGCTTCTCACAGCACTTAAACTACAAAATGGTGTGTTGAATG  547

seq1  CATAACCATTGGCCATAAAAATAGTAGCTACTAGCTTTGACTCTTTTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACCATTGGCCATAAAAATAGTAGCTACTAGCTTTGACTCTTTTTCT  597

seq1  CCTGACCAGCCCCAGCAGGCTTTCTAGTAAGATTCTGGATTCTAGCCGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACCAGCCCCAGCAGGCTTTCTAGTAAGATTCTGGATTCTAGCCGTG  647

seq1  GTTTTCCCTTT----TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  746
      |||||||||||    |||||||||||||||||||||||||||||||||||
seq2  GTTTTCCCTTTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  697

seq1  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  747

seq1  TTCTTTCTTTCTTTCTTTCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTCTTTCTTTCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC  797

seq1  TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCCTCCTCCTCCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCCTCCTCCTCCT  847

seq1  CCTCCTCCTCCTCCTCCTCCTTCTTCTTCTTCTCTCTGTCTCTGTGTGTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCCTCCTCCTCCTCCTTCTTCTTCTTCTCTCTGTCTCTGTGTGTC  897

seq1  TCTGTCCCTGTCTCTCTCTCTGTGTTTACAAATAGAATTC  986
      ||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCCTGTCTCTCTCTCTGTGTTTACAAATAGAATTC  937