BAC Information

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BAC

Clone NameB6Ng01-259D18
Chromosome13 (Build37)
Map Location 113,870,745 - 114,002,001
singlet/doubletdoublet
Overlap geneCdc20b, Gzma, 1700084D21Rik, Gzmk, Esm1
Upstream geneLOC100040716, LOC100041161, LOC100041175, Ankrd55, LOC100040725, Il6st, Il31ra, LOC100041240, Ddx4, 9130023D20Rik, Ppap2a, LOC100041282, Skiv2l2, Dhx29, LOC667756, Ccnu, EG622408, EG622422, 2310016C16Rik
Downstream geneBC067074, LOC100040888, Snag1, Hspb3, EG632832, LOC622701, LOC100040927, Arl15, A430090L17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259D18.bB6Ng01-259D18.g
ACCGA064468GA064469
length1,1291,129
definitionB6Ng01-259D18.b B6Ng01-259D18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,870,745 - 113,871,869)(114,000,878 - 114,002,001)
sequence
gaattcaccctgtagaacaggctgggctcgaactcagagatcctcctgcc
tctgcctcctgagtgctgagatcataggcccaccactgttgggcacaatt
ttcaccttcctttatacttagactgtcagcataatattcaagctgtcaga
agcatctattttgactccaaatttgaaatgatggcaaacaagtctacttc
acctttttcccttttgtgtagccctgactggccttgaacttagagaccag
cttgcccctgtctcctgagtgctgggattagctgtatgggccaccaagcc
tgggtaaacctagtttacttgtgagaataatcagaagggataataatccc
acccttctaacccacggacaggatttccatctgtgtttggaaatgtccta
atggatctttctatattttattttgaactatgctttcccctcatggttat
gaggtagtgagttttccctttctatcacgtgcctcttcctctctaactca
gtgggtccagattggggcgtgtccaccaccatgatgttcgggtggcccag
catcgtgttggaacactttaccacaaggaggctgtgtgttctctaaaatg
gtcacccgacggcaggcttctttccagtgggtgtaatgatggattactga
caatatggccccacgatcctggcgctggtgtgcagggcctgccactgaaa
gtcataccccagtccacggcggttaaggtaaggaatctaatgtctatctc
agataaaagagaaaatcagccgggcctgttgctacagggagattggaagt
ttgtgtcctgcttccattacagagtagattcaaggccaacaggggcaatt
tagtgagaccctctctcaaaataaaagtaaagtgagagctagctgggatt
gtttcattgtggcacatctgtctggtgtactcagtgctccaggatcaatt
ctctggacacacacacacacacacacacacacacacgcacaacaaaacaa
acaccaacaattaaacacaaagtgagaagacttgcatttccctccactaa
tggagataccaggccaaacatggggttaggagccacttgttgctctttcc
gaaggacttgggttcaggtttcagaaacc
gaattcacctgcagcaatgggaactaactccaggaggtggtgaatacgcc
ctatgattcccagcagcaagaaaacagttccaaactgaacccaccggctc
ttcggagaatgccagaaagagcaattcaaaatagattcttaatagcatag
ttcactaaccgctgccgcgcagctggatgctttaccccgtgcactgtcca
ttcgcaaccacatttacaaaggggtttttatgccaaagaaaaatccgttc
ccccacatgtgccactcgctcgctcgctcgctgtttcataggacaggact
gcgttaaccacttcctccctaatttccttatgtgaggtgctttttctctt
ggcagataagccctgtaatttccagaaaatacaaagcctactcagttgaa
agaaacgtatatatgtgtgttcaccgaagaaaatacttccttactagtcc
accttttgttggtcttaatcaaaaaaaaaaaaaaaaaaaaaaaaaaatct
acgcaaagaatagcatctccaaaatgtttctagaatttatgtctgagcct
ttcgctggttttgcaggctaaaagatcactaatttatgaactgttttcta
aaatgagaattggtgagcttatcttaatactagaagaatgtcatccagga
agggttgcacttgtattgaatctgagttatttagaaatttctcagaactt
ggctttccgatttcggcagcttctttgtattacacaactggatacaggaa
tgagcacgctgtttttttttttttttttttaaccatgatagcatattgtg
ataagattatatagcatctatgtatgcagacttttaaataacccttttct
tttattttttattcatttaaaaatattaatttagtccactagggtttgaa
aaataaattccacagaacaaatcaaggcatcattagcctctgggtttctg
gtcttaattataaatttcaacttcttttcctttaatctataaaaaggagg
tcacctttttaaaaaaaacagaactttagggtactattatttctgctgtc
tacaaacatctgctacttctggccttaacagaaacattgaaggtaggcct
aggccttattatactcaagggaccctctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_113870745_113871869
seq2: B6Ng01-259D18.b_45_1173

seq1  GAATTCACCCTGTAGAACAGGCTGGGCTCGAACTCAGAGATCCTCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCCTGTAGAACAGGCTGGGCTCGAACTCAGAGATCCTCCTGCC  50

seq1  TCTGCCTCCTGAGTGCTGAGATCATAGGCCCACCACTGTTGGGCACAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCTGAGTGCTGAGATCATAGGCCCACCACTGTTGGGCACAATT  100

seq1  TTCACCTTCCTTTATACTTAGACTGTCAGCATAATATTCAAGCTGTCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCTTCCTTTATACTTAGACTGTCAGCATAATATTCAAGCTGTCAGA  150

seq1  AGCATCTATTTTGACTCCAAATTTGAAATGATGGCAAACAAGTCTACTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTATTTTGACTCCAAATTTGAAATGATGGCAAACAAGTCTACTTC  200

seq1  ACCTTTTTCCCTTTTGTGTAGCCCTGACTGGCCTTGAACTTAGAGACCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTTCCCTTTTGTGTAGCCCTGACTGGCCTTGAACTTAGAGACCAG  250

seq1  CTTGCCCCTGTCTCCTGAGTGCTGGGATTAGCTGTATGGGCCACCAAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCCCTGTCTCCTGAGTGCTGGGATTAGCTGTATGGGCCACCAAGCC  300

seq1  TGGGTAAACCTAGTTTACTTGTGAGAATAATCAGAAGGGATAATAATCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAAACCTAGTTTACTTGTGAGAATAATCAGAAGGGATAATAATCCC  350

seq1  ACCCTTCTAACCCACGGACAGGATTTCCATCTGTGTTTGGAAATGTCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTCTAACCCACGGACAGGATTTCCATCTGTGTTTGGAAATGTCCTA  400

seq1  ATGGATCTTTCTATATTTTATTTTGAACTATGCTTTCCCCTCATGGTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATCTTTCTATATTTTATTTTGAACTATGCTTTCCCCTCATGGTTAT  450

seq1  GAGGTAGTGAGTTTTCCCTTTCTATCACGTGCCTCTTCCTCTCTAACTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAGTGAGTTTTCCCTTTCTATCACGTGCCTCTTCCTCTCTAACTCA  500

seq1  GTGGGTCCAGATTGGGGCGTGTCCACCACCATGATGTTCGGGTGGCCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTCCAGATTGGGGCGTGTCCACCACCATGATGTTCGGGTGGCCCAG  550

seq1  CATCGTGTTGGAACACTTTACCACAAGGAGGCTGTGTGTTCTCTAAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGTGTTGGAACACTTTACCACAAGGAGGCTGTGTGTTCTCTAAAATG  600

seq1  GTCACCCGACGGCAGGCTTCTTTCCAGTGGGTGTAATGATGGATTACTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCCGACGGCAGGCTTCTTTCCAGTGGGTGTAATGATGGATTACTGA  650

seq1  CAATATGGCCCCACGATCCTGGCGCTGGTGTGCAGGGCCTGCCACTGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATGGCCCCACGATCCTGGCGCTGGTGTGCAGGGCCTGCCACTGAAA  700

seq1  GTCATACCCCAGTCCACGGCGGTTAAGGTAAGGAATCTAATGTCTATCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATACCCCAGTCCACGGCGGTTAAGGTAAGGAATCTAATGTCTATCTC  750

seq1  AGATAAAAGAGAAAATCAGCCGGGCCTGTTGCTACAGGGAGATTGGAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAAGAGAAAATCAGCCGGGCCTGTTGCTACAGGGAGATTGGAAGT  800

seq1  TTGTGTCCTGCTTCCATTACAGAGTAGATTCAAGGCCAACAGGGGCAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTCCTGCTTCCATTACAGAGTAGATTCAAGGCCAACAGGGGCAATT  850

seq1  TAGTGAGACCCTCTCTCAAAATAAAAGTAAAGTGAGAGCTAGCTGGGATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAGACCCTCTCTCAAAATAAAAGTAAAGTGAGAGCTAGCTGGGATT  900

seq1  GTTTCATTGTGGCACATCTGTCTGGTGTACTCAGTGCTCCAGGATCAATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATTGTGGCACATCTGTCTGGTGTACTCAGTGCTCCAGGATCAATT  950

seq1  CTCTGGACACACACACACACACACACACACACACACGCACCAACAAAACA  1000
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTCTGGACACACACACACACACACACACACACACACGCA-CAACAAAACA  999

seq1  AACAACAACAATAAAACACAAAGTGAGGAAGAC-TGCA-TTCCCT-CACT  1047
      |||| ||||||| ||||||||||||| |||||| |||| |||||| ||||
seq2  AACACCAACAATTAAACACAAAGTGA-GAAGACTTGCATTTCCCTCCACT  1048

seq1  -ATGGAGATAACAGGCAAAACATGGGGTTTAGAG-CACTTGTTGCTC-TT  1094
       ||||||||| ||||| ||||||||||||  ||| |||||||||||| ||
seq2  AATGGAGATACCAGGCCAAACATGGGGTTAGGAGCCACTTGTTGCTCTTT  1098

seq1  CCGAAGGACCTGGGTTCAGGTTCCAGAAACC  1125
      ||||||||| |||||||||||| ||||||||
seq2  CCGAAGGACTTGGGTTCAGGTTTCAGAAACC  1129

seq1: chr13_114000878_114002001
seq2: B6Ng01-259D18.g_67_1195 (reverse)

seq1  AAGAGGGTCCCCTGAAGTATAAAATAAGCCTA-GCTTAACTTTTAAAATG  49
      ||||||||||| || ||||||| | | ||||| || || |||    ||||
seq2  AAGAGGGTCCCTTG-AGTATAATA-AGGCCTAGGCCTACCTT---CAATG  45

seq1  TTTCTGTT-AGGCAGAAAGTAGCAGATGTTGTAAGACAAGCAGAAATAAT  98
      |||||||| ||||   ||||||||||||||   |||| ||||||||||||
seq2  TTTCTGTTAAGGCCAGAAGTAGCAGATGTTTGTAGAC-AGCAGAAATAAT  94

seq1  AGTAACCTAAAAGTCTGTTTTTTTTAAAAAAGGTGA-CTC--TTTTATAG  145
      |||| ||||||  |||||||||||| |||||||||| |||  ||||||||
seq2  AGTACCCTAAAGTTCTGTTTTTTTT-AAAAAGGTGACCTCCTTTTTATAG  143

seq1  ATTTAAAGAAAAGAAG-TGAAA-TTATAATTAAGA-CAGAAA-CCAGAGC  191
      ||| || ||||||||| ||||| |||||||||||| |||||| |||||| 
seq2  ATTAAAGGAAAAGAAGTTGAAATTTATAATTAAGACCAGAAACCCAGAGG  193

seq1  TAAATGATGCCTTGATTTG-TCTGTGGAATTTA-TTTTCAAA-CCTAGT-  237
        ||||||||||||||||| ||||||||||||| |||||||| |||||| 
seq2  CTAATGATGCCTTGATTTGTTCTGTGGAATTTATTTTTCAAACCCTAGTG  243

seq1  GACTAAATTAATATTTTTAAATGAAT-AAAAATAAAAGAAAA-GGTTATT  285
      |||||||||||||||||||||||||| ||||||||||||||| |||||||
seq2  GACTAAATTAATATTTTTAAATGAATAAAAAATAAAAGAAAAGGGTTATT  293

seq1  TAAAAGTCTGCATACATAGATGCTATATAATCTTATCACAATATGCTATC  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTCTGCATACATAGATGCTATATAATCTTATCACAATATGCTATC  343

seq1  ATGGTTAAAAAAAAAAAAAAAAAAAAAACAGCGTGCTCATTCCTGTATCC  385
      ||||||   |||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTT---AAAAAAAAAAAAAAAAAAACAGCGTGCTCATTCCTGTATCC  390

seq1  AGTTGTGTAATACAAAGAAGCTGCCGAAATCGGAAAGCCAAGTTCTGAGA  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTGTAATACAAAGAAGCTGCCGAAATCGGAAAGCCAAGTTCTGAGA  440

seq1  AATTTCTAAATAACTCAGATTCAATACAAGTGCAACCCTTCCTGGATGAC  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTAAATAACTCAGATTCAATACAAGTGCAACCCTTCCTGGATGAC  490

seq1  ATTCTTCTAGTATTAAGATAAGCTCACCAATTCTCATTTTAGAAAACAGT  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCTAGTATTAAGATAAGCTCACCAATTCTCATTTTAGAAAACAGT  540

seq1  TCATAAATTAGTGATCTTTTAGCCTGCAAAACCAGCGAAAGGCTCAGACA  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAATTAGTGATCTTTTAGCCTGCAAAACCAGCGAAAGGCTCAGACA  590

seq1  TAAATTCTAGAAACATTTTGGAGATGCTATTCTTTGCGTAGATTTTTTTT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCTAGAAACATTTTGGAGATGCTATTCTTTGCGTAGATTTTTTTT  640

seq1  TTTTTTTTTTTTTTTTTTTGATTAAGACCAACAAAAGGTGGACTAGTAAG  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTTGATTAAGACCAACAAAAGGTGGACTAGTAAG  690

seq1  GAAGTATTTTCTTCGGTGAACACACATATATACGTTTCTTTCAACTGAGT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTATTTTCTTCGGTGAACACACATATATACGTTTCTTTCAACTGAGT  740

seq1  AGGCTTTGTATTTTCTGGAAATTACAGGGCTTATCTGCCAAGAGAAAAAG  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTGTATTTTCTGGAAATTACAGGGCTTATCTGCCAAGAGAAAAAG  790

seq1  CACCTCACATAAGGAAATTAGGGAGGAAGTGGTTAACGCAGTCCTGTCCT  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCACATAAGGAAATTAGGGAGGAAGTGGTTAACGCAGTCCTGTCCT  840

seq1  ATGAAACAGCGAGCGAGCGAGCGAGTGGCACATGTGGGGGAACGGATTTT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACAGCGAGCGAGCGAGCGAGTGGCACATGTGGGGGAACGGATTTT  890

seq1  TCTTTGGCATAAAAACCCCTTTGTAAATGTGGTTGCGAATGGACAGTGCA  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGCATAAAAACCCCTTTGTAAATGTGGTTGCGAATGGACAGTGCA  940

seq1  CGGGGTAAAGCATCCAGCTGCGCGGCAGCGGTTAGTGAACTATGCTATTA  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGTAAAGCATCCAGCTGCGCGGCAGCGGTTAGTGAACTATGCTATTA  990

seq1  AGAATCTATTTTGAATTGCTCTTTCTGGCATTCTCCGAAGAGCCGGTGGG  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTATTTTGAATTGCTCTTTCTGGCATTCTCCGAAGAGCCGGTGGG  1040

seq1  TTCAGTTTGGAACTGTTTTCTTGCTGCTGGGAATCATAGGGCGTATTCAC  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTTGGAACTGTTTTCTTGCTGCTGGGAATCATAGGGCGTATTCAC  1090

seq1  CACCTCCTGGAGTTAGTTCCCATTGCTGCAGGTGAATTC  1124
      |||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCTGGAGTTAGTTCCCATTGCTGCAGGTGAATTC  1129