BAC Information

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BAC

Clone NameB6Ng01-259F18
Chromosome13 (Build37)
Map Location 115,524,883 - 115,651,728
singlet/doubletdoublet
Overlap geneMocs2, Itga2
Upstream geneEG632832, LOC622701, LOC100040927, Arl15, A430090L17Rik, Ndufs4, LOC100040958, Fst, 4930467J12Rik
Downstream geneLOC100040975, Itga1, Pelo, LOC100041023, LOC547402, LOC100041045
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259F18.bB6Ng01-259F18.g
ACCGA064558GA064559
length1,1791,129
definitionB6Ng01-259F18.b B6Ng01-259F18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,650,567 - 115,651,728)(115,524,883 - 115,525,996)
sequence
gaattcttagttcctagtggtgcttcagttaattgcaagaaaattagctt
aaaggctgaaaacaattaggtcgactgtttggatgacacttgtgtgtgcc
ttgaggcacacgtccacctgaggagctatcacaattaagtcgaaaaccat
caccatataaacatttttagtctgcataaaagattaaaatggaaaatgta
gttctctggcagacatggctggctgcccagctatcttggccctaaagcat
gaatatgcctggtggatcttccaccttttgaatgttcttcatatattatg
ttggcgaacactgaaaaacctggacttccagagaattccattcccgctga
ttgtctggtgaggatgtgggagcctttcttgccactgggaacctgtccct
ttgactctctcctgctgtgtccaaatccaccctgatgagatggtcataac
ttttcacttcgttgcttggcaataacagcacataagaaataaatctcatc
tttaaaactggataatctatgaaactacacatctatttcaagctacttga
aaaatatgtgctgtttaccgacttcatcctttttatagctaccgagtccc
cactactagttttccctttatgtgtttttttatcagttacttttattctg
tccattcaatctttttcatgtttttgatatgtttattggtctcattaagt
cactgaaatacagaaattccagtttctttaatagatacattaaaagtaac
agatatattgtcttaggaagtgtattcaactttcaaatcctgaataaatc
tgataaagtaattccccataaggcaactgctcctaagcagtagggtgagc
tctgaatttctgagtggccaatggattcttttcaaaggaagctggcctga
ttatttggacttcagttactgtcatcatttttcatcacacgggtagtttt
tcatttctactcccctgagttggttattaaaaatttttctgactgccaat
gaaacagaagatccaaaggagggtaggaagagtccctcatgtcaaagaag
aacatagactgtgaaatgacggcccagtctaagaatgttctggactcaaa
gcttgtgctgcaaatgcgcattgccattttccacggtaagcatctagact
tggtgttcaagcaagagtacatgtccttt
gaattcatagtgtgtgtcatttatgaatgagcaggagaaaagaaaaggca
gtattaattaagtacagataaaaatgccaatggaagctagcatgctatag
ggtatttggaggcagctcgtatttaaattttgcctgaggttgatgagtgg
gctgatctgttatggggacacgttgtgtaagggaagttgaaaggatgtta
gaaaatagtttaggaataggggagccaaatgacaaatagaaattgttcct
ctattaagctttgtcatgctcaaagggcaacattttaaaacatgttcgtt
ttattacatccgctaaactagaatagcttactttgccgctcactccacca
ctgcagtaccgtagttgagtctttcctcatcttatgttcagggaaattcc
agtcaaattaggagaactgagatcctatcttctataatcactgttcttgg
agggaataaaaagagaagaagatttattgatgaccataatttcctctacg
taatcgctgagaaaatgtctcatttccaggaacactgacacaaagagaga
gagctcatacattgcggatgagtcagggttgggcgaggaagcctacaaag
accttttcctgtagtgagtcatgtggccatggcatgttcggtggcaggtc
ttctaattgctttttcgtaatcagcagttccagtgggcagctcacacttt
gcagacatgagacacagaaaaatgtttgtgctgttacataacagttagaa
tttgcttcccctcttctcaaacctcagggccttcctgtcgtctctgtatt
agaaatgaacttttaaaacaaccactacttctgttgcatttttgttctct
gcttctaattataaacctgtgtaactgttttcgttgtagttaatctcaaa
caataagtttagaatgctctgaagttccttaagtactttgtaaataggac
ccacctacttccatggtactaaggaatgggttctctagcaggaataaatc
aattagcatggacattcactattaaaggacccaatattggaactgggcct
accacagtaaggctagggattttcagcatgaccatctgtcatctttggag
aggcgaagagattcagtagctgcctcgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_115650567_115651728
seq2: B6Ng01-259F18.b_46_1224 (reverse)

seq1  AAAGAACATGTACTC-TGCCTG-ACAC--AGTCTAGATGCTTA-CGTGGA  45
      |||| |||||||||| ||| || ||||  |||||||||||||| ||||||
seq2  AAAGGACATGTACTCTTGCTTGAACACCAAGTCTAGATGCTTACCGTGGA  50

seq1  AAATGGC-ATGCGGCATTGCAGCACCAAGCTTTGAGT-CAG-ACATTCTT  92
      ||||||| |||||   |||||||| |||||||||||| ||| ||||||||
seq2  AAATGGCAATGCGCATTTGCAGCA-CAAGCTTTGAGTCCAGAACATTCTT  99

seq1  AGACTGGGCGGTCATTTCACAGTCTATG-TCTTCTTTGACTTGA-GGACT  140
      ||||||||| |||||||||||||||||| ||||||||||| ||| |||||
seq2  AGACTGGGCCGTCATTTCACAGTCTATGTTCTTCTTTGACATGAGGGACT  149

seq1  CTTCCTACCCT-CTTTGGATC-TCTGTTTCATTGGCAGTCAGAAAA--TT  186
      ||||||||||| ||||||||| ||||||||||||||||||||||||  ||
seq2  CTTCCTACCCTCCTTTGGATCTTCTGTTTCATTGGCAGTCAGAAAAATTT  199

seq1  TTAATAA-CAACTCAGGGGAGTAGAAATGAAAAACTA-CCGTGTGATGAA  234
      ||||||| ||||||||||||||||||||||||||||| ||||||||||||
seq2  TTAATAACCAACTCAGGGGAGTAGAAATGAAAAACTACCCGTGTGATGAA  249

seq1  AAATGATGACAGTAACTGAAGTCCAAATAATCAGGCCAGCTTCCTTTG-A  283
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAATGATGACAGTAACTGAAGTCCAAATAATCAGGCCAGCTTCCTTTGAA  299

seq1  AAGAATCCATTGGCCACTCAGAAATTCAGAGCTCACCCTACTGCTTAGG-  332
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAGAATCCATTGGCCACTCAGAAATTCAGAGCTCACCCTACTGCTTAGGA  349

seq1  GCAGTTGCCTTATGGGGAATTACTTTATCAGATTTATTCAGGATTTGAAA  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTGCCTTATGGGGAATTACTTTATCAGATTTATTCAGGATTTGAAA  399

seq1  GTTGAATACACTTCCTAAGACAATATATCTGTTACTTTTAATGTATCTAT  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAATACACTTCCTAAGACAATATATCTGTTACTTTTAATGTATCTAT  449

seq1  TAAAGAAACTGGAATTTCTGTATTTCAGTGACTTAATGAGACCAATAAAC  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAACTGGAATTTCTGTATTTCAGTGACTTAATGAGACCAATAAAC  499

seq1  ATATCAAAAACATGAAAAAGATTGAATGGACAGAATAAAAGTAACTGATA  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAAAAACATGAAAAAGATTGAATGGACAGAATAAAAGTAACTGATA  549

seq1  AAAAAACACATAAAGGGAAAACTAGTAGTGGGGACTCGGTAGCTATAAAA  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACACATAAAGGGAAAACTAGTAGTGGGGACTCGGTAGCTATAAAA  599

seq1  AGGATGAAGTCGGTAAACAGCACATATTTTTCAAGTAGCTTGAAATAGAT  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGAAGTCGGTAAACAGCACATATTTTTCAAGTAGCTTGAAATAGAT  649

seq1  GTGTAGTTTCATAGATTATCCAGTTTTAAAGATGAGATTTATTTCTTATG  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGTTTCATAGATTATCCAGTTTTAAAGATGAGATTTATTTCTTATG  699

seq1  TGCTGTTATTGCCAAGCAACGAAGTGAAAAGTTATGACCATCTCATCAGG  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTATTGCCAAGCAACGAAGTGAAAAGTTATGACCATCTCATCAGG  749

seq1  GTGGATTTGGACACAGCAGGAGAGAGTCAAAGGGACAGGTTCCCAGTGGC  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATTTGGACACAGCAGGAGAGAGTCAAAGGGACAGGTTCCCAGTGGC  799

seq1  AAGAAAGGCTCCCACATCCTCACCAGACAATCAGCGGGAATGGAATTCTC  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGGCTCCCACATCCTCACCAGACAATCAGCGGGAATGGAATTCTC  849

seq1  TGGAAGTCCAGGTTTTTCAGTGTTCGCCAACATAATATATGAAGAACATT  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTCCAGGTTTTTCAGTGTTCGCCAACATAATATATGAAGAACATT  899

seq1  CAAAAGGTGGAAGATCCACCAGGCATATTCATGCTTTAGGGCCAAGATAG  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGTGGAAGATCCACCAGGCATATTCATGCTTTAGGGCCAAGATAG  949

seq1  CTGGGCAGCCAGCCATGTCTGCCAGAGAACTACATTTTCCATTTTAATCT  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCAGCCAGCCATGTCTGCCAGAGAACTACATTTTCCATTTTAATCT  999

seq1  TTTATGCAGACTAAAAATGTTTATATGGTGATGGTTTTCGACTTAATTGT  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGCAGACTAAAAATGTTTATATGGTGATGGTTTTCGACTTAATTGT  1049

seq1  GATAGCTCCTCAGGTGGACGTGTGCCTCAAGGCACACACAAGTGTCATCC  1082
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCTCCTCAGGTGGACGTGTGCCTCAAGGCACACACAAGTGTCATCC  1099

seq1  AAACAGTCGACCTAATTGTTTTCAGCCTTTAAGCTAATTTTCTTGCAATT  1132
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTCGACCTAATTGTTTTCAGCCTTTAAGCTAATTTTCTTGCAATT  1149

seq1  AACTGAAGCACCACTAGGAACTAAGAATTC  1162
      ||||||||||||||||||||||||||||||
seq2  AACTGAAGCACCACTAGGAACTAAGAATTC  1179

seq1: chr13_115524883_115525996
seq2: B6Ng01-259F18.g_69_1197

seq1  GAATTCATAGTGTGTGTCATTTATGAATGAGCAGGAGAAAAGAAAAGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGTGTGTGTCATTTATGAATGAGCAGGAGAAAAGAAAAGGCA  50

seq1  GTATTAATTAAGTACAGATAAAAATGCCAATGGAAGCTAGCATGCTATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAATTAAGTACAGATAAAAATGCCAATGGAAGCTAGCATGCTATAG  100

seq1  GGTATTTGGAGGCAGCTCGTATTTAAATTTTGCCTGAGGTTGATGAGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTGGAGGCAGCTCGTATTTAAATTTTGCCTGAGGTTGATGAGTGG  150

seq1  GCTGATCTGTTATGGGGACACGTTGTGTAAGGGAAGTTGAAAGGATGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATCTGTTATGGGGACACGTTGTGTAAGGGAAGTTGAAAGGATGTTA  200

seq1  GAAAATAGTTTAGGAATAGGGGAGCCAAATGACAAATAGAAATTGTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAGTTTAGGAATAGGGGAGCCAAATGACAAATAGAAATTGTTCCT  250

seq1  CTATTAAGCTTTGTCATGCTCAAAGGGCAACATTTTAAAACATGTTCGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAAGCTTTGTCATGCTCAAAGGGCAACATTTTAAAACATGTTCGTT  300

seq1  TTATTACATCCGCTAAACTAGAATAGCTTACTTTGCCGCTCACTCCACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTACATCCGCTAAACTAGAATAGCTTACTTTGCCGCTCACTCCACCA  350

seq1  CTGCAGTACCGTAGTTGAGTCTTTCCTCATCTTATGTTCAGGGAAATTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTACCGTAGTTGAGTCTTTCCTCATCTTATGTTCAGGGAAATTCC  400

seq1  AGTCAAATTAGGAGAACTGAGATCCTATCTTCTATAATCACTGTTCTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAATTAGGAGAACTGAGATCCTATCTTCTATAATCACTGTTCTTGG  450

seq1  AGGGAATAAAAAGAGAAGAAGATTTATTGATGACCATAATTTCCTCTACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATAAAAAGAGAAGAAGATTTATTGATGACCATAATTTCCTCTACG  500

seq1  TAATCGCTGAGAAAATGTCTCATTTCCAGGAACACTGACACAAAGAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCGCTGAGAAAATGTCTCATTTCCAGGAACACTGACACAAAGAGAGA  550

seq1  GAGCTCATACATTGCGGATGAGTCAGGGTTGGGCGAGGAAGCCTACAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCATACATTGCGGATGAGTCAGGGTTGGGCGAGGAAGCCTACAAAG  600

seq1  ACCTTTTCCTGTAGTGAGTCATGTGGCCATGGCATGTTCGGTGGCAGGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTCCTGTAGTGAGTCATGTGGCCATGGCATGTTCGGTGGCAGGTC  650

seq1  TTCTAATTGC-TTTTCGTAATCAGCAGTTCCAGTGGGCAGCTCACACTTT  699
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATTGCTTTTTCGTAATCAGCAGTTCCAGTGGGCAGCTCACACTTT  700

seq1  GCAGACATGAGACACAGAAAAATGTTTGTGCTGTTACATAACAGTTAGAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACATGAGACACAGAAAAATGTTTGTGCTGTTACATAACAGTTAGAA  750

seq1  TTTGCTTCCCCTCTTCTCAAACCTCAGGGCCTTCCTGTCGTCTCTGTATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTCCCCTCTTCTCAAACCTCAGGGCCTTCCTGTCGTCTCTGTATT  800

seq1  AGAAATGAACTTTTAAAACAACCACTACTTCTGTTGCA-TTTTGTTCTCT  848
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGAAATGAACTTTTAAAACAACCACTACTTCTGTTGCATTTTTGTTCTCT  850

seq1  GCTTCTAATTATAAACCTGTGTAACTG-TTTCGTTGTAGTTTATCTCAAA  897
      ||||||||||||||||||||||||||| ||||||||||||| ||||||||
seq2  GCTTCTAATTATAAACCTGTGTAACTGTTTTCGTTGTAGTTAATCTCAAA  900

seq1  CAATAAGTTTAGAATGCTCTGAAGTT-CTTAAGTACTTTGTAAATAGGAC  946
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CAATAAGTTTAGAATGCTCTGAAGTTCCTTAAGTACTTTGTAAATAGGAC  950

seq1  CCACCTACTTCCAT-GTACT-AGGAAT-GGTTCTCTAG-AGGAATAAAAT  992
      |||||||||||||| ||||| |||||| |||||||||| |||||| ||||
seq2  CCACCTACTTCCATGGTACTAAGGAATGGGTTCTCTAGCAGGAAT-AAAT  999

seq1  CAA-TAGCATGGACATTCACTATAAAAGGACCC-ATATTGG-ACT-GGCC  1038
      ||| ||||||||||||||||||| ||||||||| ||||||| ||| ||||
seq2  CAATTAGCATGGACATTCACTATTAAAGGACCCAATATTGGAACTGGGCC  1049

seq1  TA-CACAGTAGGGCTAGGGA-TTTCAGCAATGACCATCTG-CATC-TTGG  1084
      || ||||||| ||||||||| ||||||| ||||||||||| |||| ||||
seq2  TACCACAGTAAGGCTAGGGATTTTCAGC-ATGACCATCTGTCATCTTTGG  1098

seq1  AGAGGCAGAGA-ATTCAGTAGCTGCTTCGTC  1114
      ||||||  ||| ||||||||||||| |||||
seq2  AGAGGCGAAGAGATTCAGTAGCTGCCTCGTC  1129