BAC Information

Click to search

BAC

Clone NameB6Ng01-259K01
Chromosome13 (Build37)
Map Location 83,238,600 - 83,281,495
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC238756, LOC667018
Downstream geneMef2c, LOC100043111, LOC623241, LOC432789, 2810049E08Rik, LOC100043119, LOC667081
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259K01.bB6Ng01-259K01.g
ACCGA064761GA064762
length1,2381,094
definitionB6Ng01-259K01.b B6Ng01-259K01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,238,600 - 83,239,843)(83,280,417 - 83,281,495)
sequence
gaattcttcaaaattgtgtttcataactaggcaatgggaaacgggcagaa
taatataataatttgtatgtattatgacttaatgaatttactagagaatt
aaggggagtagggcatatttcctattgacccatcttattaatcagcattt
taatatcatttaatgattatacataataatggcaggtttgtacctttatt
caagacacctcatccaaaccctagcacatgacattcttgtgtttacattg
gtactgaggacattaggttagtgtaactgagtcacatctctccaccccat
cttcttttgatagcctcccatttttgcagtttgttctagtgttcaataat
aacaccttgcctattctacctaaccccttgcagtgtaaagctggttgctt
cagtattttttccctctgacatacttgctttgtgctatatttaactctag
aacattagcattcacatccagcagcacaaaggaggttgatgctgtgcatt
acctccaccacagaagctggggctgtttctgctgtgctgctggggaaaag
acatgcagatgcaaatccaggagaagagctaagtgtactttccgtaccaa
actaaatccagacctttctgaagctgcatgtgcacaggttcattcttgct
tctttgctcccttttgcttttgctttccagtgccactctctaactacaaa
gagggaacgtgataaaagaatgttgccccaaaagaagatttttttttctt
gtacaggaaaagaagcacaggcaggataacaccaacatcagcatttatat
catcctcaagtgactgaaattagacatagtataaagtggcagtgtgtgta
cttcagtatttctttgaactgtattgcaatcatgcctcagtctaggtctg
tctagaaaggaaaagaccatggccagaaacagggtctggatactcactta
agtttctaggtatttttattgctattgtaaaatatttttatttatacctt
tagtccctgagttcctgctctctctttttttactagcaagttcttctttc
tgttgcccttctagaaactgatttatgttcttcagaaccacagtggcatc
tttctttcagtatttcagctgctctcacttagaaaattgaaatgaaggca
attagctttcccagctcatgccattaacatattctgcttggattagctct
ttcttttgaaatacataccaagcaatactaactctgag

gaattcataaatccagttagtgtattgtgatcacttatagctctgttatt
ggcagggggaggaaggactggtttctattacttatttatgaggagaatat
tttattattctcactatgtgtaaggatggattctacacacacatataaaa
cggtttctacatgtatggtatatgtatatttatatatcttatgtatatac
atatagttagcagatcttagcttgtatggtacaaatatagagtaaattaa
ttatgaatctgccttattctcactctgaaattgctggcattgctattata
actcttttaactcttctttttcttttgacaaatgttttattttaccatgg
ctcttgtatagtaataagatacatagtctagtgttgtttcataagcagaa
cattttatagactacctataaaaatatgagaagaaaagataaaacagtga
tgtccaattgtcatacctttcttattcctctgtcaaagtgttattggaaa
tgttgcttggctatgctactgtagtaagatataatgttgtattgggagtc
ttgggagaaacataaaacctgaaacaatccattcattctactaacatggt
tacttatgccaaagcagttcacatgtataatagttccttcaataactgaa
gttggaatcaatatttctccaacagtacacctggtctgcgttgattaagt
tctcattcacgggttaaatgtcatattcttttaaaagcctgcttcatttc
ccagatattccaacagtgcttggaagaaagcaaagaactcagtaaagttt
gtacagagagttttcaaaaatgtgtgaaggttttaattctccaagaaaag
caaaaataaagaaaaattgttcatatttaactcgtatgaaaaacgatata
gcaaacacgggtatctatgagtaaatcattattttcttgggagcttaaaa
ttactttgaaaaattgctacatgaaaagaattaacagtttgtgcaggaac
cccagttttaaattggctatatggctacatggtacttttataagcatgtg
aaagaactgaagttaaacagaacctgattttatcctgcagttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_83238600_83239843
seq2: B6Ng01-259K01.b_45_1282

seq1  GAATTCTTCAAAATTGTGTTTCATAACTAGGCAATGGGAAACGGGCAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAAAATTGTGTTTCATAACTAGGCAATGGGAAACGGGCAGAA  50

seq1  TAATATAATAATTTGTATGTATTATGACTTAATGAATTTACTAGAGAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATAATAATTTGTATGTATTATGACTTAATGAATTTACTAGAGAATT  100

seq1  AAGGGGAGTAGGGCATATTTCCTATTGACCCATCTTATTAATCAGCATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGAGTAGGGCATATTTCCTATTGACCCATCTTATTAATCAGCATTT  150

seq1  TAATATCATTTAATGATTATACATAATAATGGCAGGTTTGTACCTTTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATCATTTAATGATTATACATAATAATGGCAGGTTTGTACCTTTATT  200

seq1  CAAGACACCTCATCCAAACCCTAGCACATGACATTCTTGTGTTTACATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACACCTCATCCAAACCCTAGCACATGACATTCTTGTGTTTACATTG  250

seq1  GTACTGAGGACATTAGGTTAGTGTAACTGAGTCACATCTCTCCACCCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGAGGACATTAGGTTAGTGTAACTGAGTCACATCTCTCCACCCCAT  300

seq1  CTTCTTTTGATAGCCTCCCATTTTTGCAGTTTGTTCTAGTGTTCAATAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTTGATAGCCTCCCATTTTTGCAGTTTGTTCTAGTGTTCAATAAT  350

seq1  AACACCTTGCCTATTCTACCTAACCCCTTGCAGTGTAAAGCTGGTTGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCTTGCCTATTCTACCTAACCCCTTGCAGTGTAAAGCTGGTTGCTT  400

seq1  CAGTATTTTTTCCCTCTGACATACTTGCTTTGTGCTATATTTAACTCTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTTTTTCCCTCTGACATACTTGCTTTGTGCTATATTTAACTCTAG  450

seq1  AACATTAGCATTCACATCCAGCAGCACAAAGGAGGTTGATGCTGTGCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTAGCATTCACATCCAGCAGCACAAAGGAGGTTGATGCTGTGCATT  500

seq1  ACCTCCACCACAGAAGCTGGGGCTGTTTCTGCTGTGCTGCTGGGGAAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCACCACAGAAGCTGGGGCTGTTTCTGCTGTGCTGCTGGGGAAAAG  550

seq1  ACATGCAGATGCAAATCCAGGAGAAGAGCTAAGTGTACTTTCCGTACCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCAGATGCAAATCCAGGAGAAGAGCTAAGTGTACTTTCCGTACCAA  600

seq1  ACTAAATCCAGACCTTTCTGAAGCTGCATGTGCACAGGTTCATTCTTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATCCAGACCTTTCTGAAGCTGCATGTGCACAGGTTCATTCTTGCT  650

seq1  TCTTTGCTCCCTTTTGCTTTTGCTTTCCAGTGCCACTCTCTAACTACAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCTCCCTTTTGCTTTTGCTTTCCAGTGCCACTCTCTAACTACAAA  700

seq1  GAGGGAACGTGATAAAAGAATGTTGCCCCAAAAGAAGATTTTTTTTTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAACGTGATAAAAGAATGTTGCCCCAAAAGAAGATTTTTTTTTCTT  750

seq1  GTACAGGAAAAGAAGCACAGGCAGGATAACACCAACATCAGCATTTATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGGAAAAGAAGCACAGGCAGGATAACACCAACATCAGCATTTATAT  800

seq1  CATCCTCAAGTGACTGAAATTAGACATAGTATAAAGTGGCAGTGTGTGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCAAGTGACTGAAATTAGACATAGTATAAAGTGGCAGTGTGTGTA  850

seq1  CTTCAGTATTTCTTTGAACTGTATTGCAATCATGCCTCAGTCTAGGTCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTATTTCTTTGAACTGTATTGCAATCATGCCTCAGTCTAGGTCTG  900

seq1  TCTAG-AAGGAAAAGACCATGGCCAGAAACAGGGGTCTGGATACTCACTT  949
      ||||| ||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCTAGAAAGGAAAAGACCATGGCCAGAAACA-GGGTCTGGATACTCACTT  949

seq1  AAGTTTCTAGGTATTTTTATTGCTATTGTAAAATATTTTTATTTATACCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCTAGGTATTTTTATTGCTATTGTAAAATATTTTTATTTATACCT  999

seq1  TTAGTCCCTGAGTTCCTGCTCTCTC-TTTTTTACTAGCAAGTTCTTCTTT  1048
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTAGTCCCTGAGTTCCTGCTCTCTCTTTTTTTACTAGCAAGTTCTTCTTT  1049

seq1  CTGTTGCCCTTCTAGAAACTGATTTATGTTC-TCAG-ACCACAGTGGCAT  1096
      ||||||||||||||||||||||||||||||| |||| |||||||||||||
seq2  CTGTTGCCCTTCTAGAAACTGATTTATGTTCTTCAGAACCACAGTGGCAT  1099

seq1  CTTTCTTTCAGTTATTTCAGCTGCTCTTCACTTTAGAAAATGAAAATGA-  1145
      ||||||||||| |||||||||||||| |||| |||||||||  |||||| 
seq2  CTTTCTTTCAG-TATTTCAGCTGCTC-TCAC-TTAGAAAATTGAAATGAA  1146

seq1  -GCATTTAAGCTTCCCCCAGCTCATG-CAATAACATATTTTTGTCTTGAT  1193
       ||| || |||||  ||||||||||| || ||||||||| |   ||||  
seq2  GGCAATT-AGCTT-TCCCAGCTCATGCCATTAACATATTCT--GCTTGGA  1192

seq1  ATAGTTTTTTTTCTTATTAGAAAATAAATAACAAAGCAATACTAACT-TG  1242
       ||| | ||| | ||      ||||| || || |||||||||||||| ||
seq2  TTAGCTCTTTCTTTT-----GAAATACAT-ACCAAGCAATACTAACTCTG  1236

seq1  AG  1244
      ||
seq2  AG  1238


seq1: chr13_83280417_83281495
seq2: B6Ng01-259K01.g_63_1156 (reverse)

seq1  TTAACTGCAGAAT-AAATCAGG-TCTGTTT-ACTTCAG-TCTTTCACATG  46
      |||||||||| || |||||||| ||||||| ||||||| |||||||||||
seq2  TTAACTGCAGGATAAAATCAGGTTCTGTTTAACTTCAGTTCTTTCACATG  50

seq1  CTT-TAAAAGTTCCATGTTGGCATATAGCC-ATTTAAAACT-GGGTTCCT  93
      ||| ||||||| |||||| | ||||||||| |||||||||| ||||||||
seq2  CTTATAAAAGTACCATGTAGCCATATAGCCAATTTAAAACTGGGGTTCCT  100

seq1  GCAC-AACTGTTAATTTCTTTTCATGTAGC-ATTTTTC-AAGT-ATTTTA  139
      |||| ||||||||| ||||||||||||||| ||||||| |||| ||||||
seq2  GCACAAACTGTTAA-TTCTTTTCATGTAGCAATTTTTCAAAGTAATTTTA  149

seq1  AGCTCC--AG-AAATAATGATTTACTCATAGATACCCGTGTTTGCTATAT  186
      ||||||  || |||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCCAAGAAAATAATGATTTACTCATAGATACCCGTGTTTGCTATAT  199

seq1  CGTTTTTCATACGAGTT-AATATGAACAA-TTTTCTTTATTTTTGCTTTT  234
      ||||||||||||||||| ||||||||||| ||||||||||||||||||||
seq2  CGTTTTTCATACGAGTTAAATATGAACAATTTTTCTTTATTTTTGCTTTT  249

seq1  CTTGGAGAATTAAAACCTTCACACATTTTTGAAAACTCTCTGTACAAACT  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGAATTAAAACCTTCACACATTTTTGAAAACTCTCTGTACAAACT  299

seq1  TTACTGAGTTCTTTGCTTTCTTCCAAGCACTGTTGGAATATCTGGGAAAT  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGAGTTCTTTGCTTTCTTCCAAGCACTGTTGGAATATCTGGGAAAT  349

seq1  GAAGCAGGCTTTTAAAAGAATATGACATTTAACCCGTGAATGAGAACTTA  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGGCTTTTAAAAGAATATGACATTTAACCCGTGAATGAGAACTTA  399

seq1  ATCAACGCAGACCAGGTGTACTGTTGGAGAAATATTGATTCCAACTTCAG  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACGCAGACCAGGTGTACTGTTGGAGAAATATTGATTCCAACTTCAG  449

seq1  TTATTGAAGGAACTATTATACATGTGAACTGCTTTGGCATAAGTAACCAT  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGAAGGAACTATTATACATGTGAACTGCTTTGGCATAAGTAACCAT  499

seq1  GTTAGTAGAATGAATGGATTGTTTCAGGTTTTATGTTTCTCCCAAGACTC  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTAGAATGAATGGATTGTTTCAGGTTTTATGTTTCTCCCAAGACTC  549

seq1  CCAATACAACATTATATCTTACTACAGTAGCATAGCCAAGCAACATTTCC  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATACAACATTATATCTTACTACAGTAGCATAGCCAAGCAACATTTCC  599

seq1  AATAACACTTTGACAGAGGAATAAGAAAGGTATGACAATTGGACATCACT  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACACTTTGACAGAGGAATAAGAAAGGTATGACAATTGGACATCACT  649

seq1  GTTTTATCTTTTCTTCTCATATTTTTATAGGTAGTCTATAAAATGTTCTG  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATCTTTTCTTCTCATATTTTTATAGGTAGTCTATAAAATGTTCTG  699

seq1  CTTATGAAACAACACTAGACTATGTATCTTATTACTATACAAGAGCCATG  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGAAACAACACTAGACTATGTATCTTATTACTATACAAGAGCCATG  749

seq1  GTAAAATAAAACATTTGTCAAAAGAAAAAGAAGAGTTAAAAGAGTTATAA  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATAAAACATTTGTCAAAAGAAAAAGAAGAGTTAAAAGAGTTATAA  799

seq1  TAGCAATGCCAGCAATTTCAGAGTGAGAATAAGGCAGATTCATAATTAAT  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAATGCCAGCAATTTCAGAGTGAGAATAAGGCAGATTCATAATTAAT  849

seq1  TTACTCTATATTTGTACCATACAAGCTAAGATCTGCTAACTATATGTATA  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCTATATTTGTACCATACAAGCTAAGATCTGCTAACTATATGTATA  899

seq1  TACATAAGATATATAAATATACATATACCATACATGTAGAAACCGTTTTA  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAAGATATATAAATATACATATACCATACATGTAGAAACCGTTTTA  949

seq1  TATGTGTGTGTAGAATCCATCCTTACACATAGTGAGAATAATAAAATATT  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTGTGTAGAATCCATCCTTACACATAGTGAGAATAATAAAATATT  999

seq1  CTCCTCATAAATAAGTAATAGAAACCAGTCCTTCCTCCCCCTGCCAATAA  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCATAAATAAGTAATAGAAACCAGTCCTTCCTCCCCCTGCCAATAA  1049

seq1  CAGAGCTATAAGTGATCACAATACACTAACTGGATTTATGAATTC  1079
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTATAAGTGATCACAATACACTAACTGGATTTATGAATTC  1094


| Home | SequenceCutter | Blast | Download |