BAC Information

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BAC

Clone NameB6Ng01-259L20
Chromosome13 (Build37)
Map Location 45,201,560 - 45,202,654
singlet/doubletsinglet
Overlap geneLOC100039502
Upstream geneA730030A06, EG637868, EG667157, Jarid2, Dtnbp1, Hsp25-ps1
Downstream geneLOC667204, LOC100039533, Mylip, Gmpr, Atxn1, 5033430I15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259L20.bB6Ng01-259L20.g
ACCGA064845GA064846
length1,0941,200
definitionB6Ng01-259L20.b B6Ng01-259L20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcaaggtgggggtacgggtttacaaatatgaccatacttctgga
atttgtgcttcctagaggaaagatgagtgctttagtaatgtagagttgac
cacgttggagattttcaggtagctgttacaaattaataagggaagctcaa
gatgaaagagagtgggtcttgtgacgttggatgagtggaacctctgaccc
cgccactgtacatttgtttgccagggctgacagactaataagctaggcta
cttacaacagcagatactcacagcactggaaggttcaagtccaaagtcaa
ggttttagcagtgcagcccacccagcaaaggccataggagagatcctttc
ttgactctgtccagcttctggtatacctgggagcggtagttcacgtttcc
tggggtaacatgaacaaatatctattcacctcacattgagagctcaccta
gacccatcttggtgaggcaatgaatctcttatggtcataggtgacttggg
tacctacatcatgagagtgccctgggcagcctgtaggcaatgataccact
gaagactctcctcttctctagcatgtgcctactgcttacataactccctg
aggggacccatacatcttataagtttcttttaagtttcatgagctgtgac
ccttccctctcctcccatgaggaaatgtttcagcctggaggaagcagcta
taaaattcgacaccctctcctctgggtcttattctagttttttttctctt
atacaaacacttgttattggggttaagaacgactgtaacccagcagttct
cacgtccttaacacttgcatctacagagacaacttttccaaataatctcg
cattcacaggttccactgagtgcgtcttcatggaattattcattatttga
cccagaatttctagtaccatctctctgggcatcatttacttcccttcctt
ccccaaactgaaaagccaacaactttaccaccaaaacccagaacacttag
ccaggtaagagggggcacagactttttctatatgcacagcgtccttcacc
tccactgtgaggacagtttctggccagatggtatttctaggact

gaattcttcccccacctgatagtcaatcaactgatgtgccaaaaaacggg
tcatcgggccctcggtcccagggccctcaaagatatgggaaccggtttgt
caggacccaggaagcagtcagagaggcgacccaggaagacccacaagggt
ggacctgcgtgccgcctccgacttcctactaatgcctcaaatgagtattc
agccggtgccggtggagcctataccatccttgcccccgggaaccatgggc
cttattctcggccgaggttcactcaccttgcagggcttagtagtccaccc
tggagttatggattgtcaacattcccctgaaatacaggtcctgtgctcaa
gccctaagggcgttttttctattagtaaaggagataggatagctcagctg
ctgctcctccctgataataccagggagaaatctgcaggacctgagataaa
gaaaatgggctcctcaggaaatgattctgcctatttggttgtatctttaa
atgatagacctaagctccgcattaagattaatggaaaagagtttgaaggc
atccttgataccggagcagataaaagtataatttctacacattggtggcc
caaagcatggcccaccacagagtcatctcattcattacagggcctaggtt
atcaatcatgtcccactataagctccgttgccttgacgtgggaatcctct
gaagggcagcaagggaaattcataccttatgtgctcccactcccggttaa
cctctggggaagggatattatgcagcatttgggccttattttgtccaatg
aaaacgccccatcaggagggtattcagctaaagcaaaaaatatcatggca
aagatgggttataaagaaggaaaagggtttaggacatcaagaacagggaa
aggatagagcctcatctcacctaatggaaaccaagacagacagggtctgg
gttttccttagcggccattggggcagcacgacccataccatggaaaaaca
ggggacccagtggtgggtttcctccatggcacctatcctctgaaaactag
aagcttgttgatcaactggtaaagaacataaaactagcaatatgaaacct
ctacctcactggaatacttcattttggtaattaagaaagtcagaagtgaa
acgtcctcaggaactcggaggccatatatgtgaccaatatgataactata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_45201560_45202654
seq2: B6Ng01-259L20.b_48_1141 (reverse)

seq1  AGTCTTAGAAATACCATCTGGCCAGAAACTGTTCCCTCACAGTGGAGGTG  50
      |||| |||||||||||||||||||||||||||  ||||||||||||||||
seq2  AGTCCTAGAAATACCATCTGGCCAGAAACTGT--CCTCACAGTGGAGGTG  48

seq1  AAGGACGCTGTGCATTATAG-AAAAGTCTGTGCCCCCTCTTACCTGGCTA  99
      |||||||||||||| ||||| |||||||||||||||||||||||||||||
seq2  AAGGACGCTGTGCA-TATAGAAAAAGTCTGTGCCCCCTCTTACCTGGCTA  97

seq1  AGTTGTTCTGGGTTTTGGTGGT-AAGTTGTTGGCTTTTCAGTTTGGGGAA  148
      || ||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AG-TGTTCTGGGTTTTGGTGGTAAAGTTGTTGGCTTTTCAGTTTGGGGAA  146

seq1  GGAA-GGAAGTAAATGATGCCCAGAGAGATGGTACTAG-AATTCTGGGTC  196
      |||| ||||||||||||||||||||||||||||||||| |||||||||||
seq2  GGAAGGGAAGTAAATGATGCCCAGAGAGATGGTACTAGAAATTCTGGGTC  196

seq1  AAATAATGAATAATTCCATGAAGACGCACTCAGTGGAACCTGTGAATGCG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATGAATAATTCCATGAAGACGCACTCAGTGGAACCTGTGAATGCG  246

seq1  AGATTATTTGGAAAAGTTGTCTCTGTAGATGCAAGTGTTAAGGACGTGAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATTTGGAAAAGTTGTCTCTGTAGATGCAAGTGTTAAGGACGTGAG  296

seq1  AACCTGCTGGGTTACAGTCGTTCTTAACCCCAATAACAAGTGTTTGTATA  346
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AA-CTGCTGGGTTACAGTCGTTCTTAACCCCAATAACAAGTGTTTGTATA  345

seq1  AGAGAAAAAAAACTAGAATAAGACCCAGAGGAGAGGGTGTCGAATTTTAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAAAAAACTAGAATAAGACCCAGAGGAGAGGGTGTCGAATTTTAT  395

seq1  AGCTGCTTCCTCCAGGCTGAAACATTTCCTCATGGGAGGAGAGGGAAGGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTTCCTCCAGGCTGAAACATTTCCTCATGGGAGGAGAGGGAAGGG  445

seq1  TCACAGCTCATGAAACTTAAAAGAAACTTATAAGATGTATGGGTCCCCTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCTCATGAAACTTAAAAGAAACTTATAAGATGTATGGGTCCCCTC  495

seq1  AGGGAGTTATGTAAGCAGTAGGCACATGCTAGAGAAGAGGAGAGTCTTCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTTATGTAAGCAGTAGGCACATGCTAGAGAAGAGGAGAGTCTTCA  545

seq1  GTGGTATCATTGCCTACAGGCTGCCCAGGGCACTCTCATGATGTAGGTAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTATCATTGCCTACAGGCTGCCCAGGGCACTCTCATGATGTAGGTAC  595

seq1  CCAAGTCACCTATGACCATAAGAGATTCATTGCCTCACCAAGATGGGTCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTCACCTATGACCATAAGAGATTCATTGCCTCACCAAGATGGGTCT  645

seq1  AGGTGAGCTCTCAATGTGAGGTGAATAGATATTTGTTCATGTTACCCCAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAGCTCTCAATGTGAGGTGAATAGATATTTGTTCATGTTACCCCAG  695

seq1  GAAACGTGAACTACCGCTCCCAGGTATACCAGAAGCTGGACAGAGTCAAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACGTGAACTACCGCTCCCAGGTATACCAGAAGCTGGACAGAGTCAAG  745

seq1  AAAGGATCTCTCCTATGGCCTTTGCTGGGTGGGCTGCACTGCTAAAACCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATCTCTCCTATGGCCTTTGCTGGGTGGGCTGCACTGCTAAAACCT  795

seq1  TGACTTTGGACTTGAACCTTCCAGTGCTGTGAGTATCTGCTGTTGTAAGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTGGACTTGAACCTTCCAGTGCTGTGAGTATCTGCTGTTGTAAGT  845

seq1  AGCCTAGCTTATTAGTCTGTCAGCCCTGGCAAACAAATGTACAGTGGCGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAGCTTATTAGTCTGTCAGCCCTGGCAAACAAATGTACAGTGGCGG  895

seq1  GGTCAGAGGTTCCACTCATCCAACGTCACAAGACCCACTCTCTTTCATCT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGAGGTTCCACTCATCCAACGTCACAAGACCCACTCTCTTTCATCT  945

seq1  TGAGCTTCCCTTATTAATTTGTAACAGCTACCTGAAAATCTCCAACGTGG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTTCCCTTATTAATTTGTAACAGCTACCTGAAAATCTCCAACGTGG  995

seq1  TCAACTCTACATTACTAAAGCACTCATCTTTCCTCTAGGAAGCACAAATT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTCTACATTACTAAAGCACTCATCTTTCCTCTAGGAAGCACAAATT  1045

seq1  CCAGAAGTATGGTCATATTTGTAAACCCGTACCCCCACCTTGAGAATTC  1095
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGTATGGTCATATTTGTAAACCCGTACCCCCACCTTGAGAATTC  1094


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