BAC Information

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BAC

Clone NameB6Ng01-260E19
Chromosome13 (Build37)
Map Location 88,313,690 - 88,314,835
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC675707
Downstream geneLOC667230, EG435375, Edil3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260E19.bB6Ng01-260E19.g
ACCGA065256GA065257
length1,1461,196
definitionB6Ng01-260E19.b B6Ng01-260E19.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgtttaactctctactctgtttttaaaataaggttatttgtt
tctctggtgttgaacttcttgagttctttatataatttggagattaaccc
tctgtcttatgtagggttggtaaagatcttttcccaatctgtggattgct
attttgttctattgactgtgtcctttgcctaacaaaagtttttcaatgtt
ataaagtcccatttgacaattcttgatcttagaccataagttatttgtgt
tctgttcaggaaaatttcccctgtgccaatgtgttctaggttctttccca
ctttttcttctattagattcatcatttgtagttttatggggaaatctttg
gtccacttgtacatgagctttgtagaaggagataagaattggtccattcg
tattctcctacatgctgacagccagttgaaccaactccatttcttgaaaa
tgctggcttttccccactgagtggtggtttctaataactgttaaatatat
tatctctgtgagaactgcatatttctttacgagacaagttaagattgaca
attgaggtttttatatacataatatatacataaaactgtaaagggcgtct
aagttctgtatttatgttttagttgttgtattgagcatattttatttctg
acttaacaataggtttattttttttactctagcaaaataatacttaaata
atgcttataaatcaggtgtggagaagtgccagtgaatgaagagaatgaaa
agaaaccctcagatctatgtaaaaatttataaagaatttaaatgaatctt
aactacaataataaaaaaaaaaaaaaacctaatcagagatgaagaaatta
tctggatggatgcttgtcaaaagaagaaattagtggttaatagctttatt
aggaaatagtcagtctttatctaccaatgcaatgcaaatcaaatctatga
gaaaatagaacacactcacatgtagcaaatgactactataataaagaaaa
caaaattaaatttcaaattctgaagaaattttagggtagtaaacgcagac
tatgttttcttcttcatgatttaaggaggagagaaagttacatgtatatt
aaatgcagcaatttgtcatgaacaaaaattttggtgtttctaattt

gaattctttgtttagctctgtacccaattttttaatggggttatttgaat
ttctggtgtccaccttcttgaggtctttgtatatattgaatagtagtccc
ctaatagatttaggattggtagaaattctttcctaatctgttggtgttct
ttttgtcttattgacagtaacttttgccctacagaagctttgaaagttta
tgaggtcccatttgttgattcttgatcttacagcacaggccattgttgtt
ctgtttaggaatttttccccagtgcccatatcttcaatgcttttccccgc
tttctcctctgtaaatgtcagtgtctctggttttatgtggagttctttga
tccacttagacttgaactttatacaaggagataagaatggatcgattcgc
tttcttctacataataaccactagttgtgccagcatcatttgttgaaaat
gctgtcttttttccactggatggttttagctcccttgtcaaaggccaagt
gaccataggtgtgtgggttcatttcgggatagcgattgaaatgtaaatga
agaaaatacctaataaaacattgaaaaaaaaaagaattctcaactgagga
atactgaatggctgagtagcacctttaaaaatgttcaacatccttaatca
ttggggaaatgcaaatcaaagcaaccctgagattccacctctctcctgtc
agaatggctaagatcaaaatttcagataactgtagatgccagtgaggatg
tggagaaagaggaacactccttcattgctggtgggattgcaagcttgtaa
aaccactctggaagtcagtctggtagttcctcagaaaattggacctagta
ctactagaagatccagcaatacctcttctgggcatatacccaaaagctgt
tccaactggtaatagaacacatgttccactatgttcttcttttagttttt
tgaaagatattttcttgcttttctaggtgtagtttactgacctgtctgtg
ttttttctttatatcttgagtactgatttgtgaaaagaatatgtgtaaat
tggttttgtcatgcatacattgattctcatctatggtactgaagttttct
gcatagtagcctggcctcatttgtcctaggttctatatgaacactggtct
gatcactcgacgtttacaatagctcactctgcggtgagaaagaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_88313690_88314835
seq2: B6Ng01-260E19.b_45_1190 (reverse)

seq1  AAATT-TAAACA--AAAATTTTTGTTCATGACAAATATGCTGGCATTTAA  47
      |||||  |||||  |||||||||||||||||||||| |||| ||||||||
seq2  AAATTAGAAACACCAAAATTTTTGTTCATGACAAAT-TGCT-GCATTTAA  48

seq1  TATACATGTACCTTTCTCTCCTTTCTTTAAAATCATGAAGGAAGAAACAT  97
      |||||||||| ||||||||||  || || ||||||||||| |  ||||||
seq2  TATACATGTAACTTTCTCTCC--TCCTT-AAATCATGAAGAAGAAAACAT  95

seq1  AGTCTTGCGTTTACTACCCTAAAATTTCTTCAGAATTTG-AATTTAATTT  146
      |||| |||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGTC-TGCGTTTACTACCCTAAAATTTCTTCAGAATTTGAAATTTAATTT  144

seq1  TGTTTTCTTTATTATAGTAGTCATTTGCTACATGTGAGTGTG-TCTA-TT  194
      |||||||||||||||||||||||||||||||||||||||||| |||| ||
seq2  TGTTTTCTTTATTATAGTAGTCATTTGCTACATGTGAGTGTGTTCTATTT  194

seq1  TCTCATAGATTTGATTTGCATTGCATTGGTAGATAAAGACTGACTATTTC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATAGATTTGATTTGCATTGCATTGGTAGATAAAGACTGACTATTTC  244

seq1  CTAATAAAGCTATTAACCACCTAATTTCTTCTTTTGACAAGCATCCATCC  294
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTAATAAAGCTATTAACCA-CTAATTTCTTCTTTTGACAAGCATCCATCC  293

seq1  AGATAATTTCTTCATCTCTGATTAGG-TTTTTTTTTTTTTTATTATTGTA  343
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGATAATTTCTTCATCTCTGATTAGGTTTTTTTTTTTTTTTATTATTGTA  343

seq1  GTTAAGATTCATTTAAATTCTTTATAAATTTTTACATAGATCTGAGGGTT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGATTCATTTAAATTCTTTATAAATTTTTACATAGATCTGAGGGTT  393

seq1  TCTTTTCATTCTCTTCATTCACTGGCACTTCTCCACACCTGATTTATAAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCATTCTCTTCATTCACTGGCACTTCTCCACACCTGATTTATAAG  443

seq1  CATTATTTAAGTATTATTTTGCTAGAGTAAAAAAAATAAACCTATTGTTA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTTAAGTATTATTTTGCTAGAGTAAAAAAAATAAACCTATTGTTA  493

seq1  AGTCAGAAATAAAATATGCTCAATACAACAACTAAAACATAAATACAGAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGAAATAAAATATGCTCAATACAACAACTAAAACATAAATACAGAA  543

seq1  CTTAGACGCCCTTTACAGTTTTATGTATATATTATGTATATAAAAACCTC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGACGCCCTTTACAGTTTTATGTATATATTATGTATATAAAAACCTC  593

seq1  AATTGTCAATCTTAACTTGTCTCGTAAAGAAATATGCAGTTCTCACAGAG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTCAATCTTAACTTGTCTCGTAAAGAAATATGCAGTTCTCACAGAG  643

seq1  ATAATATATTTAACAGTTATTAGAAACCACCACTCAGTGGGGAAAAGCCA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATATTTAACAGTTATTAGAAACCACCACTCAGTGGGGAAAAGCCA  693

seq1  GCATTTTCAAGAAATGGAGTTGGTTCAACTGGCTGTCAGCATGTAGGAGA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTCAAGAAATGGAGTTGGTTCAACTGGCTGTCAGCATGTAGGAGA  743

seq1  ATACGAATGGACCAATTCTTATCTCCTTCTACAAAGCTCATGTACAAGTG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGAATGGACCAATTCTTATCTCCTTCTACAAAGCTCATGTACAAGTG  793

seq1  GACCAAAGATTTCCCCATAAAACTACAAATGATGAATCTAATAGAAGAAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAAGATTTCCCCATAAAACTACAAATGATGAATCTAATAGAAGAAA  843

seq1  AAGTGGGAAAGAACCTAGAACACATTGGCACAGGGGAAATTTTCCTGAAC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGGAAAGAACCTAGAACACATTGGCACAGGGGAAATTTTCCTGAAC  893

seq1  AGAACACAAATAACTTATGGTCTAAGATCAAGAATTGTCAAATGGGACTT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACAAATAACTTATGGTCTAAGATCAAGAATTGTCAAATGGGACTT  943

seq1  TATAACATTGAAAAACTTTTGTTAGGCAAAGGACACAGTCAATAGAACAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACATTGAAAAACTTTTGTTAGGCAAAGGACACAGTCAATAGAACAA  993

seq1  AATAGCAATCCACAGATTGGGAAAAGATCTTTACCAACCCTACATAAGAC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCAATCCACAGATTGGGAAAAGATCTTTACCAACCCTACATAAGAC  1043

seq1  AGAGGGTTAATCTCCAAATTATATAAAGAACTCAAGAAGTTCAACACCAG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGTTAATCTCCAAATTATATAAAGAACTCAAGAAGTTCAACACCAG  1093

seq1  AGAAACAAATAACCTTATTTTAAAAACAGAGTAGAGAGTTAAACAAAGAA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAAATAACCTTATTTTAAAAACAGAGTAGAGAGTTAAACAAAGAA  1143

seq1  TTC  1146
      |||
seq2  TTC  1146


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