BAC Information

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BAC

Clone NameB6Ng01-261F21
Chromosome13 (Build37)
Map Location 27,626,296 - 27,627,176
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957, Prl, Prl3d1, Prl3d2, Prl3d3, Prl3c1, Prl3b1, Prl3a1, Prl6a1, Prl8a2, Prl2b1, Prl8a6, Prl8a8
Downstream genePrl8a9, Prl8a1, Prl7b1, Prl7a1, Prl7a2, RP23-135A24.2-001, Prl7d1, Prl7c1, Prl2a1, OTTMUSG00000000651, LOC666321, LOC195243, LOC100041036, Prl4a1, Prl5a1, LOC100042388, LOC100042393, LOC100042399, Ppia-ps13_297.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261F21.bB6Ng01-261F21.g
ACCGA066054GA066055
length1,1461,166
definitionB6Ng01-261F21.b B6Ng01-261F21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttgtcttcttagcaatattgtaggtatatttaatctagtctctt
tagtctctgtctatgatatctcatatggtctcattacaacatcttgtatt
caaattacttaatatatttcagcattcttctgtggcttaagtcacattcc
aggcaaggctgtgttcatccattcctgcaaagtttgtcccattcctacct
ctctctatttgatcttttattccaagatggaataaagaagtaaggaaagg
gagaatttcattcattgccaacttgtgtgatgaagtcaaagactgcagag
agattcttttaaagttttttcttttattgaaaatagatttttcctcatat
attgtatcctgattacatattatccacctctctctgctcttccccgttct
accctctcttccctctgttctggatccattctctttctatttctgattaa
aaaacaaacagtgttctaaggtataataataaatataatctaattaataa
aataagatataacacaaattaacacatcataattgagtgaaacaagcaca
tggtagggaaaaagcctaacagcagtcacaaagaggagaggtctacttgt
tttcacatgtagaatcccataaacagcataaactacaaggcataatatac
acacaaaggacttaatacagatccatgaaggccttgtgcatggtgtctca
gtctctgtgggttaatataacattaaccatgttggtttataaggtcaggt
ttttttggagtcctccatctcctctgtctcttacactctgtctgccttct
cttccaaggaattctctaagctctgatgggaagggtatgatggaaacatc
ctgtttatggctctgtgtcccagggtttcacattctgcttaatgtttgag
tgtaggtttcaacatttgctcccatctgtggcaggaggcaggaggaagat
tctctgaagatggcttgtggaaggcattttatctatgaagataatggtct
tatcacttttattccctataggttttgtttttgtgtgtttattaaaagag
tgatatgcttttgcttcattagatcttggctatctagtctcagaatttct
gattacatcagccacgttcaggtatgggaaattcatctcaacagag
gaattcagctctgtctgggtccatgagagagtttggatgaggcaagatca
tgtggaatcagtactaattcctgaagctgttctggaagtaagcctctgaa
cagcatcagaaagtggggtactagaacaacagggtagttctgcatctctg
aggatgaatacaatcaaagctataattccttaacatatgaatctcacaac
caaaattttagtgcaattaagatattcatatggcttgggcagagtgcaca
gattagttaaggatgaaattttgctccttgtttgagaatgaaagataact
gttttatgagttaattttatcacttataaatctccattcatgccacatga
aggaaggcatgaacaattttacagattccaaaatgaagaggatttttttt
tctcaatttggctgaagtttttactagatacattttttgtctaagccagt
tactggactgttcccatgttgaagaataagcagatcaattcacctgtttt
gtttgattttcttgaatttttcaagatcctcaagagatctttccctgtca
tatatgatccatgttgctttgtacagggtccagaaccctttatcctttcc
tttaaacacaaatacaaatcttctctccccaaatactgtgtccttggtcc
agtaaacagaaatcattcaaggaatagcttgacctcttgtagaggaattc
taatatatccatcaaaattataatcacatacattttgatgattcaaataa
ttcaaatcaactaaagtaatctaaacaaacattaaccttgaaattctttt
tttcactactgcctgtttatgacctataacttaagattaaaagcatcaac
atcttatacatcaatgtatactggagagtaatagctctgtgagtacatac
tgtagtatgtagtatatttagtacatactttatctttattaaattctcac
gtcctaagttttcttacttatttgatagtttaggctttttacgcccctgc
cttttgatctagttaatttttttaagatcaatgcctcaatctctatacat
ctctgttcttaccttaataacttcccttctactactgtgttatgcctatt
taacaagctccattttttgaacatacaagcctgaacatcctagaccttcc
taggtatacctacgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_27626296_27627176
seq2: B6Ng01-261F21.g_344_1231

seq1  TGTTTGAGAATGAAAGATAACTGTTTTATGAGTTAATTTTATCACTTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGAGAATGAAAGATAACTGTTTTATGAGTTAATTTTATCACTTATA  50

seq1  AATCTCCATTCATGCCACATGAAGGAAGGCATGAACAATTTTACAGATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCCATTCATGCCACATGAAGGAAGGCATGAACAATTTTACAGATTC  100

seq1  CAAAATGAAGAGGATTTTTTTTTCTCAATTTGGCTGAAGTTTTTACTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGAAGAGGATTTTTTTTTCTCAATTTGGCTGAAGTTTTTACTAGA  150

seq1  TACATTTTTTGTCTAAGCCAGTTACTGGACTGTTCCCATGTTGAAGAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTTTTGTCTAAGCCAGTTACTGGACTGTTCCCATGTTGAAGAATA  200

seq1  AGCAGATCAATTCACCTGTTTTGTTTGATTTTCTTGAATTTTTCAAGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATCAATTCACCTGTTTTGTTTGATTTTCTTGAATTTTTCAAGATC  250

seq1  CTCAAGAGATCTTTCCCTGTCATATATGATCCATGTTGCTTTGTACAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGAGATCTTTCCCTGTCATATATGATCCATGTTGCTTTGTACAGGG  300

seq1  TCCAGAACCCTTTATCCTTTCCTTTAAACACAAATACAAATCTTCTCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAACCCTTTATCCTTTCCTTTAAACACAAATACAAATCTTCTCTCC  350

seq1  CCAAATACTGTGTCCTTGGTCCAGTAAACAGAAATCATTCAAGGAATAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATACTGTGTCCTTGGTCCAGTAAACAGAAATCATTCAAGGAATAGC  400

seq1  TTGACCTCTTGTAGAGGAATTCTAATATATCCATCAAAATTATAATCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCTCTTGTAGAGGAATTCTAATATATCCATCAAAATTATAATCACA  450

seq1  TACATTTTGATGATTCAAATAATTCAAATCAACTAAAGTAATCTAAACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTTGATGATTCAAATAATTCAAATCAACTAAAGTAATCTAAACAA  500

seq1  ACATTAACCTTGAAATTC-TTTTTTCACTACTGCCTGTTTATGACCTATA  549
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ACATTAACCTTGAAATTCTTTTTTTCACTACTGCCTGTTTATGACCTATA  550

seq1  ACTTAAGATTAAAAGCATCAACATCTTATACATCAATGTATACTGGAGAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAGATTAAAAGCATCAACATCTTATACATCAATGTATACTGGAGAG  600

seq1  TAATAGCTCTGTGAGTACATACTGTAGTATGTAGTATATTTAGTACATAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGCTCTGTGAGTACATACTGTAGTATGTAGTATATTTAGTACATAC  650

seq1  TTTATCTTTATTAAATTCTCACGTCCTAAGTTT--CTAC-TATTTGATAG  696
      |||||||||||||||||||||||||||||||||   ||| ||||||||||
seq2  TTTATCTTTATTAAATTCTCACGTCCTAAGTTTTCTTACTTATTTGATAG  700

seq1  TTTAGGCTTTTTACG-CCCTG-CTTTTGATCTAGTTAATTTTTTTAGAAT  744
      ||||||||||||||| ||||| ||||||||||||||||||||||||  ||
seq2  TTTAGGCTTTTTACGCCCCTGCCTTTTGATCTAGTTAATTTTTTTAAGAT  750

seq1  CAAATGCCTCAATCTCTATACATCTCTGTTCTTAACCTTAATTAACTTCC  794
      | ||||||||||||||||||||||||||||||| ||||||| ||||||||
seq2  C-AATGCCTCAATCTCTATACATCTCTGTTCTT-ACCTTAA-TAACTTCC  797

seq1  CTTCTACTTACTGTG-TATGCCTATTT-ACAGGCTCCATTTTTTG-ACAT  841
      ||||||| ||||||| ||||||||||| ||| ||||||||||||| ||||
seq2  CTTCTAC-TACTGTGTTATGCCTATTTAACAAGCTCCATTTTTTGAACAT  846

seq1  ACAAGGCTGACAATCCTAGACATT-CTAGGTATA-CTACGTT  881
      ||||| ||||  ||||||||| || ||||||||| |||||||
seq2  ACAAGCCTGAACATCCTAGACCTTCCTAGGTATACCTACGTT  888