BAC Information

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BAC

Clone NameB6Ng01-261F23
Chromosome13 (Build37)13 (Build37)
Map Location 66,873,511 - 66,874,31965,398,766 - 65,399,546
singlet/doubletsingletsinglet
Overlap geneLOC666027
Upstream geneLOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik, Mzf6d, Vmn2r-ps106
Downstream geneLOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp87, Zfp748, A530054K11Rik, LOC328277, 3830402I07Rik, EG666137, Zfp85-rs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261F23.bB6Ng01-261F23.g
ACCGA066058GA066059
length1,106951
definitionB6Ng01-261F23.b B6Ng01-261F23.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(66,873,511 - 66,874,319)(65,398,766 - 65,399,546)
sequence
gaattccttgatccatttagacttgagctttgtacaaggagacaagaatg
aatcaattcacacccttctacatgataactgccagttgtgcctgcaccat
ttgttgaaaatgctgtcttttttccactggatggttttagctcccttgtc
aaagatctagtgaccttaggtgtgtgagttcatttctgggtcttcaattc
attgttctagctgtttgtcactgtactagtaccatgcagtttttatcaca
attgctctgtagtacagtttgaagtcaggcatggtgattccaccagaggt
tcttttatcattgagaatagcttttgctatcctaggtctttttgttattc
cagatgaatttgcaaattgccctttctaattcgatgaagaatttagttgg
aattttgatggggattgcattgaatctgtagattgcttttggcaagatag
ccatttttactgtattgatccttccattctatgagcatgggagatctttc
catcttctgagatcttctttgatttcttttttcagagaattcaagttctt
atcatacaaatctttcactttcttagatagaatcacaccaaggtatttca
tattatttgtacctatagtgaaggttgttgtttccctaatttctttctca
tccggtttatcctttgtgtagagtataaggccttggcttcacacaatata
ctgtgaccaaggtacataagtaaataaacacttttctcacatgtttcttt
ggctatggtggtttttacagcaacagaatctaagacatcacctaaatggt
aaattgccactgttgggatttggaatctcatagcttcctgatgcaataaa
aggcactgattttgaaaagagaaagaagaatgcatgttagcagagtgaga
agcaccgtgacagtaatgcatatgatagcacaaagcactgcactttggga
tagcttttccaatgtactagggagatgctaagaattaccagaataacata
caaagaccgggaataatttctatggaaaggacatgagaatccagaattgt
gcttgcaaaaataaggcttttgtaatgttatgtgaaaaagacagtttcat
tatgaa
gaattcatactggggagcgaccttatgtgtgtaccaagtgtgggaaggca
ttcacacagagctcaaaccttattgggcatcagaaaacacacagaaagaa
gttcaagaagcagcctaaattgtagactttgtgcctttcagagcactatt
gtttcagcattgagatgtaccatgcagtcactgagtatgataggctttgg
ataaggagagccccacaccttaaggacagcacgggaaaccacctagcagg
cagccagtgaaaccatcagggaggttgttttgtttttttttttaagatag
tttcttcatttacatttcaaatgctatccccgaagtcccctataccctcc
ccccaccctgctcatctacccactcccacttcgtgaccctggcattcccc
tgtactggggcatataaagtttgcaagacaaaggggcctctattcccaat
gatggccaactagcccatcttctgctacatatgcagctagagacacaagc
tctgggggtactggttagttcatattgttgttccacctatagagttgcag
aacccttcagctccttgggtactttgtctagctcctccattgggagccct
gtgttccatccaatagatgactgtgagtatccacttctgtatttgccaag
cactgggatagcctcacaagagacagctatatcagggttctttcagcaat
atcttgctggcatatgcaatagtgtctgtgtttggtggctgattatggga
tgaaccaccgggtggagcagtctctggatggttcatcctttcattttagc
tccaaactttgtctcttaactccttccatgggtattttgttccatattct
agggaggaatgaagtatccacgcattggtcttccttcttcttgattttct
tgtgtttggcaaattgtatcttggggattctaagtttctgggctaatatc
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_66873511_66874319
seq2: B6Ng01-261F23.b_331_1149

seq1  TTCCACCAGAGGTTCTTTTATCATTGAGAATAGCTTTTGCTATCCTAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACCAGAGGTTCTTTTATCATTGAGAATAGCTTTTGCTATCCTAGGT  50

seq1  CTTTTTGTTATTCCAGATGAATTTGCAAATTGCCCTTTCTAATTCGATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGTTATTCCAGATGAATTTGCAAATTGCCCTTTCTAATTCGATGA  100

seq1  AGAATTTAGTTGGAATTTTGATGGGGATTGCATTGTATCTATAGATTGCT  150
      ||||||||||||||||||||||||||||||||||| |||| |||||||||
seq2  AGAATTTAGTTGGAATTTTGATGGGGATTGCATTGAATCTGTAGATTGCT  150

seq1  TTTGGTAAGATAGCCATTTTTACTATATTGATCCTTCCAATCTATGAGCA  200
      ||||| |||||||||||||||||| |||||||||||||| ||||||||||
seq2  TTTGGCAAGATAGCCATTTTTACTGTATTGATCCTTCCATTCTATGAGCA  200

seq1  TGGGAGATCTTTCCATCTTCTGAAATCCTCTTTGATTTCTTTCTTCAGAG  250
      ||||||||||||||||||||||| ||| |||||||||||||| |||||||
seq2  TGGGAGATCTTTCCATCTTCTGAGATCTTCTTTGATTTCTTTTTTCAGAG  250

seq1  AATTCAAGTTCTTATCATACATATCTTTCATTTTCTTAGTTAGAATCACA  300
      ||||||||||||||||||||| |||||||| |||||||| ||||||||||
seq2  AATTCAAGTTCTTATCATACAAATCTTTCACTTTCTTAGATAGAATCACA  300

seq1  CCAAGGTATTTCATATTATTTGTGACTATTGTGAAGGGTGTTGTTTCCCT  350
      |||||||||||||||||||||||  |||| ||||||| ||||||||||||
seq2  CCAAGGTATTTCATATTATTTGTACCTATAGTGAAGGTTGTTGTTTCCCT  350

seq1  AATTTCTTTCTCATCTGGTTTATCCTTTGTGTAGAGTATAAGGCCTTGGC  400
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AATTTCTTTCTCATCCGGTTTATCCTTTGTGTAGAGTATAAGGCCTTGGC  400

seq1  TTCACTCAATATACTGTGACCAAGGTACATAAGTAAATAAACAGTTTTCT  450
      ||||| ||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTCACACAATATACTGTGACCAAGGTACATAAGTAAATAAACACTTTTCT  450

seq1  CACATGTTTCTTTGGCTATGGTGGTTTTTACAGCAACAGAATCTAAGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTTTCTTTGGCTATGGTGGTTTTTACAGCAACAGAATCTAAGACA  500

seq1  TCACCTAAATGGTAAATTGCCACTGTTGGGATTTTGAATATCATAGATTC  550
      |||||||||||||||||||||||||||||||||| |||| |||||| |||
seq2  TCACCTAAATGGTAAATTGCCACTGTTGGGATTTGGAATCTCATAGCTTC  550

seq1  CTGATGCAATAAAAGGCACTGA-TTTGAAAAGAGAAAGAAGAATGCATGT  599
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTGATGCAATAAAAGGCACTGATTTTGAAAAGAGAAAGAAGAATGCATGT  600

seq1  TAGCAGAGTGAGAAGCACCGTGACAGTAATGCATGTGATAGCACAGAAGC  649
      |||||||||||||||||||||||||||||||||| |||||||||| ||||
seq2  TAGCAGAGTGAGAAGCACCGTGACAGTAATGCATATGATAGCACA-AAGC  649

seq1  GCTGCACTTTGGGATAGC-TTTACAATGTACTAGGGAGATGCTAAGAA-T  697
       ||||||||||||||||| ||| ||||||||||||||||||||||||| |
seq2  ACTGCACTTTGGGATAGCTTTTCCAATGTACTAGGGAGATGCTAAGAATT  699

seq1  ACCAG-ATAACATACAAAGA-CGGGAACA--TTCTATGAAAAGAACATTG  743
      ||||| |||||||||||||| |||||| |  ||||||| |||| ||| ||
seq2  ACCAGAATAACATACAAAGACCGGGAATAATTTCTATGGAAAGGACA-TG  748

seq1  AG-ATTCAG-ATTGTGCCTGC-AAAATAAGGC-TTTGTAAATGTATGTG-  788
      || || ||| ||||||| ||| |||||||||| |||||||   |||||| 
seq2  AGAATCCAGAATTGTGCTTGCAAAAATAAGGCTTTTGTAATGTTATGTGA  798

seq1  AAAAGACAGTTTCCTTATGAA  809
      ||||||||||||| |||||||
seq2  AAAAGACAGTTTCATTATGAA  819

seq1: chr13_65398766_65399546
seq2: B6Ng01-261F23.g_66_846

seq1  GAATTCATACTGGGGAGCGACCTTATGTGTGTACCAAGTGTGGGAAGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACTGGGGAGCGACCTTATGTGTGTACCAAGTGTGGGAAGGCA  50

seq1  TTCACACAGAGCTCAAACCTTATTGGGCATCAGAAAACACACAGAAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACAGAGCTCAAACCTTATTGGGCATCAGAAAACACACAGAAAGAA  100

seq1  GTTCAAGAAGCAGCCTAAATTGTAGACTTTGTGCCTTTCAGAGCACTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAGAAGCAGCCTAAATTGTAGACTTTGTGCCTTTCAGAGCACTATT  150

seq1  GTTTCAGCATTGAGATGTACCATGCAGTCACTGAGTATGATAGGCTTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGCATTGAGATGTACCATGCAGTCACTGAGTATGATAGGCTTTGG  200

seq1  ATAAGGAGAGCCCCACACCTTAAGGACAGCACGGGAAACCACCTAGCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGAGAGCCCCACACCTTAAGGACAGCACGGGAAACCACCTAGCAGG  250

seq1  CAGCCAGTGAAACCATCAGGGAGGTTGTTTTGTTTTTTTTTTTAAGATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGTGAAACCATCAGGGAGGTTGTTTTGTTTTTTTTTTTAAGATAG  300

seq1  TTTCTTCATTTACATTTCAAATGCTATCCCCGAAGTCCCCTATACCCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCATTTACATTTCAAATGCTATCCCCGAAGTCCCCTATACCCTCC  350

seq1  CCCCACCCTGCTCATCTACCCACTCCCACTTCGTGACCCTGGCATTCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCCTGCTCATCTACCCACTCCCACTTCGTGACCCTGGCATTCCCC  400

seq1  TGTACTGGGGCATATAAAGTTTGCAAGACAAAGGGGCCTCTATTCCCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTGGGGCATATAAAGTTTGCAAGACAAAGGGGCCTCTATTCCCAAT  450

seq1  GATGGCCAACTAGCCCATCTTCTGCTACATATGCAGCTAGAGACACAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCCAACTAGCCCATCTTCTGCTACATATGCAGCTAGAGACACAAGC  500

seq1  TCTGGGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGAGTTGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGAGTTGCAG  550

seq1  AACCCTTCAGCTCCTTGGGTACTTTGTCTAGCTCCTCCATTGGGAGCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTTCAGCTCCTTGGGTACTTTGTCTAGCTCCTCCATTGGGAGCCCT  600

seq1  GTGTTCCATCCAATAGATGACTGTGAGTATCCACTTCTGTATTTGCCAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCCATCCAATAGATGACTGTGAGTATCCACTTCTGTATTTGCCAAG  650

seq1  CACTGGGATAGCCTCACAAGAGACAGCTATATCAGGGTTCTTTCAGCAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGATAGCCTCACAAGAGACAGCTATATCAGGGTTCTTTCAGCAAT  700

seq1  ATCTTGCTGGCATATGCAATAGTGTCTGTGTTTGGTGGCTGATTATGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGCTGGCATATGCAATAGTGTCTGTGTTTGGTGGCTGATTATGGGA  750

seq1  TGAACCACCGGGTGGAGCAGTCTCTGGATGG  781
      |||||||||||||||||||||||||||||||
seq2  TGAACCACCGGGTGGAGCAGTCTCTGGATGG  781