BAC Information

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BAC

Clone NameB6Ng01-261P01
Chromosome13 (Build37)
Map Location 74,669,462 - 74,775,840
singlet/doubletdoublet
Overlap geneLOC434490
Upstream geneSlc6a3, Clptm1l, Tert, Slc6a18, Slc6a19, Slc12a7, Nkd2, EG666360, Trip13, Brd9, Zdhhc11, LOC100042909, 2900041A09Rik, LOC621824, Cep72, Slc9a3, Exoc3, Ahrr, Pdcd6, Sdha, Ccdc127, AI595366, Zfp72, LOC666670, LOC634386, LOC100042547, LOC666683, LOC547136, BC012278
Downstream geneArts1, Cast, LOC622204, EG544954, Pcsk1, LOC672443, LOC666764, LOC100042606
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261P01.bB6Ng01-261P01.g
ACCGA066487GA066488
length3821,153
definitionB6Ng01-261P01.b B6Ng01-261P01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,669,462 - 74,669,843)(74,774,714 - 74,775,840)
sequence
caggagaatacagagcgtgttcagcctcagtgagccaaggagagacagac
aaagattacagattgagaaagaagagagaaaatctttaagccttaaaaaa
ttgcctgtcagttcataccaaaaagttattctgtgtatattcattatgca
ccttccagatattcctgtttccagatttccctgtttccagatgtctgatg
cttcttttgcatcagatctgctgcatgttttaccttctcagaacctgctg
tgattgatcacttggctctgttggtgacttgtttttctacctgtaattat
gttcctatgctggtgtctaggcctctagatttggggtaattattgatgta
ggtacttgtttctgggggtttgggtgggagtt
gaattcatgggctacctacttcagccttcagagtagttggtactgtggta
tataccaaccactacatcctgaaatctttgtgtccttgtggcctaccaac
aactaaactactaaaatacatagtgcatctatggaacagtactaaaaata
aaacccagctccctgtaattttcagtcaccttttaagaaactgagccaag
caatcctaaaaatcgcattcttagcagctacttgtggcatatgtcttttg
ggtagcatatgcctctaatctcagcctggaggggaggaaaaccaccatga
attctagtctcaaaacaaaacaaaatacttgagcagcaataaagctctga
gcttgaataacatcagctgatggtatgtggtagacaacaggtccttacta
gtcctttaatgtgatttgctgcacatccctgtgatgatggctggtagggg
agggcctagaagatcagccaaattccaaaaggggctaaatcttaaagaag
atgcaaatgggaactacagaaatagctcagagattaagagtactgactgc
gtctctaaaggactccagttcaactcttagcatccacatggcagctcaca
gggagactcaaaaaaaaaactgtggccaggaggtgttggtgcacaccttt
aatcccagcacttgggaggcagaggcaggtagatctctgagtttgagacc
agcctggtctgtagagccagcgagttctaggactgccaaggctacacaca
gagaatccctgcctcaaaagaccaaaaacaacaacaacaacaactgattt
gactgtgcgatggtggctcatgcctttaatgctagcacacaacaaggcag
agaaaagcaagtctccatgagtcccaaaccagcctggtctacatagagag
tggtccagggatagcctaggctacatacttattcagccccacaatatttc
ctaattatttacttcttttatggttatgcagctgagaacttgaaccctgg
aatctttgggtgtgctaagcccacacctttaactacctcctacacattgc
cagctgtccatcatttataatccatgtgccgtgaagatactcccatttgg
ggggtcttctacaaaaccatctgtagatatacgccagggatgtttccatt
tct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_74669462_74669843
seq2: B6Ng01-261P01.b_51_432

seq1  CAGGAGAATACAGAGCGTGTTCAGCCTCAGTGAGCCAAGGAGAGACAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGAATACAGAGCGTGTTCAGCCTCAGTGAGCCAAGGAGAGACAGAC  50

seq1  AAAGATTACAGATTGAGAAAGAAGAGAGAAAATCTTTAAGCCTTAAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTACAGATTGAGAAAGAAGAGAGAAAATCTTTAAGCCTTAAAAAA  100

seq1  TTGCCTGTCAGTTCATACCAAAAAGTTATTCTGTGTATATTCATTATGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTGTCAGTTCATACCAAAAAGTTATTCTGTGTATATTCATTATGCA  150

seq1  CCTTCCAGATATTCCTGTTTCCAGATTTCCCTGTTTCCAGATGTCTGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCAGATATTCCTGTTTCCAGATTTCCCTGTTTCCAGATGTCTGATG  200

seq1  CTTCTTTTGCATCAGATCTGCTGCATGTTTTACCTTCTCAGAACCTGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTTGCATCAGATCTGCTGCATGTTTTACCTTCTCAGAACCTGCTG  250

seq1  TGATTGATCACTTGGCTCTGTTGGTGACTTGTTTTTCTACCTGTAATTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGATCACTTGGCTCTGTTGGTGACTTGTTTTTCTACCTGTAATTAT  300

seq1  GTTCCTATGCTGGTGTCTAGGCCTCTAGATTTGGGGTAATTATTGATGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTATGCTGGTGTCTAGGCCTCTAGATTTGGGGTAATTATTGATGTA  350

seq1  GGTACTTGTTTCTGGGGGTTTGGGTGGGAGTT  382
      ||||||||||||||||||||||||||||||||
seq2  GGTACTTGTTTCTGGGGGTTTGGGTGGGAGTT  382

seq1: chr13_74774714_74775840
seq2: B6Ng01-261P01.g_67_1219 (reverse)

seq1  AGAAATGGAA--CTACTTGCCG--TATCTACAGATG--TTTGTAGAGGAC  44
      ||||||||||   | | || ||  ||||||||||||  |||||||| |||
seq2  AGAAATGGAAACATCCCTGGCGTATATCTACAGATGGTTTTGTAGAAGAC  50

seq1  CCCCAAATTGGGAGTCTC----AGGCAC-TG--ATATAAATGATGGACAG  87
      |||| || ||||||| ||     ||||| ||   ||||||||||||||||
seq2  CCCCCAAATGGGAGTATCTTCACGGCACATGGATTATAAATGATGGACAG  100

seq1  CT-GCAA--TGTAGGAAGTAGT--AAAGTGTGGGCTTAGCACACAC-AAG  131
      || ||||  ||||||| |||||  || ||||||||||||||||| | |||
seq2  CTGGCAATGTGTAGGAGGTAGTTAAAGGTGTGGGCTTAGCACACCCAAAG  150

seq1  ATTCCA-GGTTCA--GTCTCAGCTGCATAAACATTAAAGAAGTAAATAAT  178
      |||||| ||||||   |||||||||||||| ||| |||||||||||||||
seq2  ATTCCAGGGTTCAAGTTCTCAGCTGCATAACCATAAAAGAAGTAAATAAT  200

seq1  TA-GAAATATTGTGGGGCTGAAT-AGTATGTAGCCTAGGCTAT-CCTGGA  225
      || |||||||||||||||||||| ||||||||||||||||||| ||||||
seq2  TAGGAAATATTGTGGGGCTGAATAAGTATGTAGCCTAGGCTATCCCTGGA  250

seq1  ACACTCTCTATGTAGACCAGGCTGGTTTGGGACTCATGGAGACTTGCTTT  275
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTCTATGTAGACCAGGCTGGTTTGGGACTCATGGAGACTTGCTTT  300

seq1  TCTCTG-CTTGTTGTGTGCTAGCATTAAAGGCATGAGCCACCATCGCACA  324
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCCTTGTTGTGTGCTAGCATTAAAGGCATGAGCCACCATCGCACA  350

seq1  GTCAAATCAGTTGTTGTTGTTGTTGTTTTTGGTCTTTTGAGGCAGGGATT  374
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAATCAGTTGTTGTTGTTGTTGTTTTTGGTCTTTTGAGGCAGGGATT  400

seq1  CTCTGTGTGTAGCCTTGGCAGTCCTAGAACTCGCTGGCTCTACAGACCAG  424
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGTGTAGCCTTGGCAGTCCTAGAACTCGCTGGCTCTACAGACCAG  450

seq1  GCTGGTCTCAAACTCAGAGATCTACCTGCCTCTGCCTCCCAAGTGCTGGG  474
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTCTCAAACTCAGAGATCTACCTGCCTCTGCCTCCCAAGTGCTGGG  500

seq1  ATTAAAGGTGTGCACCAACACCTCCTGGCCACAGTTTTTTTTTTGAGTCT  524
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGGTGTGCACCAACACCTCCTGGCCACAGTTTTTTTTTTGAGTCT  550

seq1  CCCTGTGAGCTGCCATGTGGATGCTAAGAGTTGAACTGGAGTCCTTTAGA  574
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGAGCTGCCATGTGGATGCTAAGAGTTGAACTGGAGTCCTTTAGA  600

seq1  GACGCAGTCAGTACTCTTAATCTCTGAGCTATTTCTGTAGTTCCCATTTG  624
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCAGTCAGTACTCTTAATCTCTGAGCTATTTCTGTAGTTCCCATTTG  650

seq1  CATCTTCTTTAAGATTTAGCCCCTTTTGGAATTTGGCTGATCTTCTAGGC  674
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCTTTAAGATTTAGCCCCTTTTGGAATTTGGCTGATCTTCTAGGC  700

seq1  CCTCCCCTACCAGCCATCATCACAGGGATGTGCAGCAAATCACATTAAAG  724
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCTACCAGCCATCATCACAGGGATGTGCAGCAAATCACATTAAAG  750

seq1  GACTAGTAAGGACCTGTTGTCTACCACATACCATCAGCTGATGTTATTCA  774
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGTAAGGACCTGTTGTCTACCACATACCATCAGCTGATGTTATTCA  800

seq1  AGCTCAGAGCTTTATTGCTGCTCAAGTATTTTGTTTTGTTTTGAGACTAG  824
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGAGCTTTATTGCTGCTCAAGTATTTTGTTTTGTTTTGAGACTAG  850

seq1  AATTCATGGTGGTTTTCCTCCCCTCCAGGCTGAGATTAGAGGCATATGCT  874
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATGGTGGTTTTCCTCCCCTCCAGGCTGAGATTAGAGGCATATGCT  900

seq1  ACCCAAAAGACATATGCCACAAGTAGCTGCTAAGAATGCGATTTTTAGGA  924
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAAAGACATATGCCACAAGTAGCTGCTAAGAATGCGATTTTTAGGA  950

seq1  TTGCTTGGCTCAGTTTCTTAAAAGGTGACTGAAAATTACAGGGAGCTGGG  974
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGGCTCAGTTTCTTAAAAGGTGACTGAAAATTACAGGGAGCTGGG  1000

seq1  TTTTATTTTTAGTACTGTTCCATAGATGCACTATGTATTTTAGTAGTTTA  1024
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTTAGTACTGTTCCATAGATGCACTATGTATTTTAGTAGTTTA  1050

seq1  GTTGTTGGTAGGCCACAAGGACACAAAGATTTCAGGATGTAGTGGTTGGT  1074
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGGTAGGCCACAAGGACACAAAGATTTCAGGATGTAGTGGTTGGT  1100

seq1  ATATACCACAGTACCAACTACTCTGAAGGCTGAAGTAGGTAGCCCATGAA  1124
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACCACAGTACCAACTACTCTGAAGGCTGAAGTAGGTAGCCCATGAA  1150

seq1  TTC  1127
      |||
seq2  TTC  1153