BAC Information

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BAC

Clone NameB6Ng01-262O15
Chromosome13 (Build37)
Map Location 89,519,721 - 89,683,050
singlet/doubletdoublet
Overlap geneHapln1
Upstream geneLOC667230, EG435375, Edil3
Downstream geneEG667266, Vcan, LOC100042940, Xrcc4, Tmem167, LOC100043170
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262O15.bB6Ng01-262O15.g
ACCGA067210GA067211
length1,0831,105
definitionB6Ng01-262O15.b B6Ng01-262O15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,681,958 - 89,683,050)(89,519,721 - 89,520,837)
sequence
gaattccactggtaattcactaaactgctcagacagaccttgacttttaa
tctacatacaaattaaccttgttttgatttctattcttagtatccactcc
ccagtctgtcacttagttaagggtaaaatgtatcaaccaaacaaactagt
caatttttatgtaattgacccccaaaccagtgaatttatagaggctggta
agaaagccttctgtataagtccactaggtggcgataagggaccatgcttc
accctaacttacagactcttccattcatacagtaaatgaagagctgtgat
attaatttataccatcgtgccctcgctacatctaatatttgtttaatcag
ctgtttcctctaatcctgctcagacaatattgattaaaatctctagcata
gtcatattctgttgtttttttttttttgtctcttacttcctttaacattt
tgttaccttttgaatgacagagtaagtaaatttaaatgacatagactaag
tgatgtggttagtagtaatgactgtaggtagtttagaaattaattggaag
caacagaaggttgtgatgtaaaaaaaaaattgtttccaaatttgcccttg
gttgctactggaattttaattggtgggataccattaatcttcaaactgta
atctggaaaaatatatgtctgggataaaaggaaatgaatactggtatttt
ctgaagggatccctctcctgaatatgatctgtgttcatctttacgaagat
gaagacagtccaatgtctttaggaaataccagtactccacaccaaaaagt
ctaaaagagaggactgttcagaaccctatccaccataagatatttttctg
tatactctgaatgtatttatactggatgtgtttcttgctcccaaggaagg
aaaacgaactgaaaccaccagagacataatgaatcgattcttctccgtga
agtttcttcagcacttctaaatagtgtcagtcattccttctcagagaaga
gccttgtgagtaaatggctcacttcataagaacaccatggttctccctct
cacagaagcaggccactgggcggcactcctgtt

gaattcatgcagttttatttttctttcttttaaaagaatccatgtaacag
tatgaataagtgagctattatgccaaattattgatttagaacttcttgaa
ctttatataagcttacattcacagatatggaaaatacccttaaataagtc
aggaaatagagcttttatggtccctaagagagcacccacagtagctgcta
aaggtagtagaacagaagtagtgttattattcgacagctgagagttcaga
atcagtttagagaattgtgccatacctacgattttaaaactctttatttt
gcttgtgtatattttagtgttttgtgactcttagatttacccagtacaat
ttttatttagtaaaactgatcctacacagtaatataaaatctctggcctc
tgggacagtaccagaaagtctaaaatattggctgccagtacagcaagaat
gtaaagttgtttttttattaaatacattaaagtaatttgtataattcaat
acggtacttgaaactttaaatggacagaaagaattgctactgagacagtg
ttatcaagtaagattaacatttaatttacttgaaaaaaataataatattc
ctggttttgaagagctgagttcatactatggggggacttgataatttgag
gttattcatgtgttaatatttctattggaaatattttttcatacttgaat
tatgttttcccctctgtctacttctcccaattttcccatcttacctccca
tacagatctaccctcttcctgcctctctttataaaacaaatagacatcta
aggtgtaataagttatatagtaagatttttaaaaagtaaccacaatcaga
gtagggcaaagcaaccaaacagaagcacaagtacaggaagaaaaagaaca
gagacacagagatactcacaacagtatcaacaccatatgaactcaaagag
actgaggcagcatgttagagccttcacaggtctgcacagatgagtcttaa
tggtgaaaaaaagaagcagactcatgctccatcctactggatgttataac
tgcctcgacttgcatgactaaacaacagttctcgagggagggagctacat
gacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_89681958_89683050
seq2: B6Ng01-262O15.b_47_1129 (reverse)

seq1  AACAGGAGTGCCCGCCCAGTGGGCCCTGGCTTTCTGTGAGAGGGAGAA-C  49
      |||||||||| |||||||||||  ||||   ||||||||||||||||| |
seq2  AACAGGAGTG-CCGCCCAGTGG--CCTG--CTTCTGTGAGAGGGAGAACC  45

seq1  ATGGTGTTCTTATGAAGTGAGCCATTTACTTCCAACAAGGCTCTGTCTCT  99
      ||||||||||||||||||||||||||||||    |||||||||| |||||
seq2  ATGGTGTTCTTATGAAGTGAGCCATTTACT---CACAAGGCTCT-TCTCT  91

seq1  GAG-AGGAATGACTGACACTAATTTAGAAGTGCTGAAGAAACCTTCACGG  148
      ||| |||||||||||||||| |||||||||||||||||||| ||||||||
seq2  GAGAAGGAATGACTGACACT-ATTTAGAAGTGCTGAAGAAA-CTTCACGG  139

seq1  AGAAGAATCGATTCATTATGTCTCTGGTGGTTTCAGTTCGTTTTCCTTCC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAATCGATTCATTATGTCTCTGGTGGTTTCAGTTCGTTTTCCTTCC  189

seq1  TTTGGGAGCAAGAAACACATCCAGTATAAATACATTCAGAGTATACAGAA  248
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTGGGAGCAAGAAACACATCCAGTATAAATACATTCAGAGTATACAGAA  238

seq1  AAATATCTTATGGTGGATAGGGTTCTGAACAGTCCTCTCTTTTAGACTTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCTTATGGTGGATAGGGTTCTGAACAGTCCTCTCTTTTAGACTTT  288

seq1  TTGGTGTGGAGTACTGGTATTTCCTAAAGACATTGGACTGTCTTCATCTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGTGGAGTACTGGTATTTCCTAAAGACATTGGACTGTCTTCATCTT  338

seq1  CGTAAAGATGAACACAGATCATATTCAGGAGAGGGATCCCTTCAGAAAAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAAAGATGAACACAGATCATATTCAGGAGAGGGATCCCTTCAGAAAAT  388

seq1  ACCAGTATTCATTTCCTTTTATCCCAGACATATATTTTTCCAGATTACAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTATTCATTTCCTTTTATCCCAGACATATATTTTTCCAGATTACAG  438

seq1  TTTGAAGATTAATGGTATCCCACCAATTAAAATTCCAGTAGCAACCAAGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGATTAATGGTATCCCACCAATTAAAATTCCAGTAGCAACCAAGG  488

seq1  GCAAATTTGGAAACAATTTTTTTTTTACATCACAACCTTCTGTTGCTTCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATTTGGAAACAATTTTTTTTTTACATCACAACCTTCTGTTGCTTCC  538

seq1  AATTAATTTCTAAACTACCTACAGTCATTACTACTAACCACATCACTTAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATTTCTAAACTACCTACAGTCATTACTACTAACCACATCACTTAG  588

seq1  TCTATGTCATTTAAATTTACTTACTCTGTCATTCAAAAGGTAACAAAATG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTCATTTAAATTTACTTACTCTGTCATTCAAAAGGTAACAAAATG  638

seq1  TTAAAGGAAGTAAGAGACAAAAAAAAAAAAACAACAGAATATGACTATGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGAAGTAAGAGACAAAAAAAAAAAAACAACAGAATATGACTATGC  688

seq1  TAGAGATTTTAATCAATATTGTCTGAGCAGGATTAGAGGAAACAGCTGAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATTTTAATCAATATTGTCTGAGCAGGATTAGAGGAAACAGCTGAT  738

seq1  TAAACAAATATTAGATGTAGCGAGGGCACGATGGTATAAATTAATATCAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAATATTAGATGTAGCGAGGGCACGATGGTATAAATTAATATCAC  788

seq1  AGCTCTTCATTTACTGTATGAATGGAAGAGTCTGTAAGTTAGGGTGAAGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTCATTTACTGTATGAATGGAAGAGTCTGTAAGTTAGGGTGAAGC  838

seq1  ATGGTCCCTTATCGCCACCTAGTGGACTTATACAGAAGGCTTTCTTACCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCCCTTATCGCCACCTAGTGGACTTATACAGAAGGCTTTCTTACCA  888

seq1  GCCTCTATAAATTCACTGGTTTGGGGGTCAATTACATAAAAATTGACTAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTATAAATTCACTGGTTTGGGGGTCAATTACATAAAAATTGACTAG  938

seq1  TTTGTTTGGTTGATACATTTTACCCTTAACTAAGTGACAGACTGGGGAGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGGTTGATACATTTTACCCTTAACTAAGTGACAGACTGGGGAGT  988

seq1  GGATACTAAGAATAGAAATCAAAACAAGGTTAATTTGTATGTAGATTAAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACTAAGAATAGAAATCAAAACAAGGTTAATTTGTATGTAGATTAAA  1038

seq1  AGTCAAGGTCTGTCTGAGCAGTTTAGTGAATTACCAGTGGAATTC  1093
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAGGTCTGTCTGAGCAGTTTAGTGAATTACCAGTGGAATTC  1083


seq1: chr13_89519721_89520837
seq2: B6Ng01-262O15.g_69_1173

seq1  GAATTCATGCAGTTTTATTTTTCTTTCTTTTAAAAGAATCCATGTAACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCAGTTTTATTTTTCTTTCTTTTAAAAGAATCCATGTAACAG  50

seq1  TATGAATAAGTGAGCTATTATGCCAAATTATTGATTTAGAACTTCTTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATAAGTGAGCTATTATGCCAAATTATTGATTTAGAACTTCTTGAA  100

seq1  CTTTATATAAGCTTACATTCACAGATATGGAAAATACCCTTAAATAAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATATAAGCTTACATTCACAGATATGGAAAATACCCTTAAATAAGTC  150

seq1  AGGAAATAGAGCTTTTATGGTCCCTAAGAGAGCACCCACAGTAGCTGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATAGAGCTTTTATGGTCCCTAAGAGAGCACCCACAGTAGCTGCTA  200

seq1  AAGGTAGTAGAACAGAAGTAGTGTTATTATTCGACAGCTGAGAGTTCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAGTAGAACAGAAGTAGTGTTATTATTCGACAGCTGAGAGTTCAGA  250

seq1  ATCAGTTTAGAGAATTGTGCCATACCTACGATTTTAAAACTCTTTATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTTTAGAGAATTGTGCCATACCTACGATTTTAAAACTCTTTATTTT  300

seq1  GCTTGTGTATATTTTAGTGTTTTGTGACTCTTAGATTTACCCAGTACAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTGTATATTTTAGTGTTTTGTGACTCTTAGATTTACCCAGTACAAT  350

seq1  TTTTATTTAGTAAAACTGATCCTACACAGTAATATAAAATCTCTGGCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTAGTAAAACTGATCCTACACAGTAATATAAAATCTCTGGCCTC  400

seq1  TGGGACAGTACCAGAAAGTCTAAAATATTGGCTGCCAGTACAGCAAGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACAGTACCAGAAAGTCTAAAATATTGGCTGCCAGTACAGCAAGAAT  450

seq1  GTAAAGTTGTTTTTTTATTAAATACATTAAAGTAATTTGTATAATTCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGTTGTTTTTTTATTAAATACATTAAAGTAATTTGTATAATTCAAT  500

seq1  ACGGTACTTGAAACTTTAAATGGACAGAAAGAATTGCTACTGAGACAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTACTTGAAACTTTAAATGGACAGAAAGAATTGCTACTGAGACAGTG  550

seq1  TTATCAAGTAAGATTAACATTTAATTTACTTGAAAAAAATAATAATATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAAGTAAGATTAACATTTAATTTACTTGAAAAAAATAATAATATTC  600

seq1  CTGGTTTTGAAGAGCTGAGTTCATACTATGGGGGGACTTGATAATTTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTTGAAGAGCTGAGTTCATACTATGGGGGGACTTGATAATTTGAG  650

seq1  GTTATTCATGTGTTAATATTTCTATTGGAAATATTTTTTCATACTTGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTCATGTGTTAATATTTCTATTGGAAATATTTTTTCATACTTGAAT  700

seq1  TATGTTTTCCCCTCTGTCTACTTCTCCCAATTTTCCCATCTTACCTCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTTCCCCTCTGTCTACTTCTCCCAATTTTCCCATCTTACCTCCCA  750

seq1  TACAGATCTACCCTCTTCCTGCCTCTCTTTATAAAACAAATAGACATCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATCTACCCTCTTCCTGCCTCTCTTTATAAAACAAATAGACATCTA  800

seq1  AGGTGTAATAAGTTATATAGTAAGATTTTTAAAAAGTAACCACAATCAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTAATAAGTTATATAGTAAGATTTTTAAAAAGTAACCACAATCAGA  850

seq1  GTAGGGCAAAGCAACCAAACAGAAGCACAAGTACAGGAAGAAAAAGAACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTAGGGCAAAGCAACCAAACAGAAGCACAAGTACAGGAAGAAAAAGAAC-  899

seq1  AGAGACACAGAGATACTCACAACAGTATCAACACCATATGAACTCAAAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACACAGAGATACTCACAACAGTATCAACACCATATGAACTCAAAGA  949

seq1  GACTGAGGCAGCATGTTAGAGCCTTCACAGGTCTGCACCAGATGAGGTCT  1000
      ||||||||||||||||||||||||||||||||||||| ||||||| ||||
seq2  GACTGAGGCAGCATGTTAGAGCCTTCACAGGTCTGCA-CAGATGA-GTCT  997

seq1  TAATGGTGAAAAAAAG-AGCAGACTCATGCTCCCATCCCTAACTGAGATG  1049
      |||||||||||||||| |||||||||||||| ||||||   |||| ||||
seq2  TAATGGTGAAAAAAAGAAGCAGACTCATGCT-CCATCC--TACTG-GATG  1043

seq1  TTATTAACTGCCCCGACCTGCATGACTTAAACAACAGGGTTCTCGAGGGA  1099
      ||| |||||||| |||| |||||||| |||||||||  ||||||||||| 
seq2  TTA-TAACTGCCTCGACTTGCATGAC-TAAACAACA--GTTCTCGAGGG-  1088

seq1  AGGGAGCTACAATGACAA  1117
      |||||||||| |||||||
seq2  AGGGAGCTAC-ATGACAA  1105


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