BAC Information

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BAC

Clone NameB6Ng01-263C21
Chromosome13 (Build37)
Map Location 40,108,102 - 40,244,383
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666867, LOC100041779, LOC382747, A230103O09Rik
Downstream geneOfcc1, LOC666894, LOC100039048, Tcfap2a, EG621629, EG637157, LOC100039105, Gcnt2, Pak1ip1, Tmem14c, Mak, EG621771, Gcm2, LOC637277
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-263C21.bB6Ng01-263C21.g
ACCGA067412GA067413
length2611,164
definitionB6Ng01-263C21.b B6Ng01-263C21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,108,102 - 40,108,362)(40,243,191 - 40,244,383)
sequence
tgttccttgttgtgactccaaaagaccaggttcaaatccctttcaatttc
aggctttatagctctcgaactcaatagcagagctaacagggctgcagctg
tagggtagtgcctttctggaaaggatagaagatggaaaagaaagtaagag
agatgggaatggagagagagaagaggtagggagggaaagagaggaggaga
tgaatgaagaactaggatcgcaggggaagaaagagaaaccgtgagaggac
tgtcggagaga
gaattccttggctatggtataaacttggttacaatatgacagacaccaag
ggaaaagaattcagcttaaggggattgacacattcatgtcttagaaacat
gactaacttctcattgaattaaaaatagaagtttaggtgaaagtatatgc
tgtggttgtatttaagctaaaagtatctgtctattaacatttatctatct
atattttctagctattatctatcatctatctatatatcttttatatattt
tctaagctttttataagttcttatatgtcaatgctataagattacatcgc
tggaaaagtgaaaaatcttgataatatatttttgtcacctttttgttttt
aattctagggaatatttctaataaaactgactcctgccctaggggttgtg
atctgtgcctcttcaaagaagcccgtgacttgcaagctatggtaagagga
aggctggtcctagaaagaccatgaaaataataattactggttattagcta
tgatttcttaaaatgtatttccaggttgagagtaatttgttcttcaaact
ggttttgaagtgtgggatatgacaaagcatctaatgcctgacaaatctat
agcgcccgtaaagttttatcacatcccactcagacttctttatgctattg
gcaagtttagtttaaattaagctgtctaggtgactttccatcttgagagg
acaattagaaaatgtgttaatcacgctgtgtttctaaaacaacagacact
atttaaaccggtctagaaccggtttatacggatttttcaattatgcttag
gaaaactgatgcagatacatagattctccttccctgctttgagtgatctt
aacaaggggcagttgtcgggagaaaaatggctatggacattctaggacat
cagtcttttaaagccttcccagggtttctaatacttactgttaacaacaa
actttgcaattaggagaaaggagaaagatggacgtgaataaaattagtat
aaaaggccaaaattatataaaaactgttttatgagtttgcagattcatag
cagctctctctttctcctcttttctccttcctctcctccctccctctttt
tctccttcctttcttcctgccttctgccttcttccccatcttccttgatc
gttctttcttttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_40108102_40108362
seq2: B6Ng01-263C21.b_49_309

seq1  TGTTCCTTGTTGTGACTCCAAAAGACCAGGTTCAAATCCCTTTCAATTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTTGTTGTGACTCCAAAAGACCAGGTTCAAATCCCTTTCAATTTC  50

seq1  AGGCTTTATAGCTCTCGAACTCAATAGCAGAGCTAACAGGGCTGCAGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTATAGCTCTCGAACTCAATAGCAGAGCTAACAGGGCTGCAGCTG  100

seq1  TAGGGTAGTGCCTTTCTGGAAAGGATAGAAGATGGAAAAGAAAGTAAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTAGTGCCTTTCTGGAAAGGATAGAAGATGGAAAAGAAAGTAAGAG  150

seq1  AGATGGGAATGGAGAGAGAGAAGAGGTAGGGAGGGAAAGAGAGGAGGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGGAATGGAGAGAGAGAAGAGGTAGGGAGGGAAAGAGAGGAGGAGA  200

seq1  TGAATGAAGAAGGAGGAAGGGAGGGGAAGAGAGTGAGAAAGTGAGAGGAA  250
      |||||||||||  ||||  | ||||||||| || || |  ||||||||| 
seq2  TGAATGAAGAACTAGGATCGCAGGGGAAGAAAGAGAAACCGTGAGAGGAC  250

seq1  GGAGGGAGAGA  261
       |  |||||||
seq2  TGTCGGAGAGA  261

seq1: chr13_40243191_40244383
seq2: B6Ng01-263C21.g_65_1228 (reverse)

seq1  TGAAAAGAAAGAAGGAACAAGGAGGGAGGGGGAGAGAGGGGAGAGAAAGC  50
      ||||||||||||| || |||||| |  |||| ||| |||    |||| ||
seq2  TGAAAAGAAAGAACGATCAAGGAAGATGGGGAAGA-AGG---CAGAAGGC  46

seq1  AGGAAAGGAAAGGAAGGAAGAAAAAAGAGGGAAGGGAGGGAAGGAGGGAG  100
      |||||  |||||||||||   |||||||||| |||||||  |||| ||||
seq2  AGGAA--GAAAGGAAGGA--GAAAAAGAGGG-AGGGAGGAGAGGAAGGAG  91

seq1  GGAGGAAAAAGAAGGAAGAAAAGAAAGAAGGAAACTGCTTAATTGAATCT  150
            |||||| |       |||||| ||  | |||||    |||||||
seq2  ------AAAAGAGG-------AGAAAG-AGAGAGCTGCT---ATGAATCT  124

seq1  GCAAACTCATAAAACAGTTTTTATAATAATTTTGGGCTTTTTATACTAAT  200
      |||||||||||||||||||||||| |||||||| ||| ||||||||||||
seq2  GCAAACTCATAAAACAGTTTTTAT-ATAATTTT-GGCCTTTTATACTAAT  172

seq1  TTTATTCACGTCCATCTTTTCTCCTTTCTCCTAATTGCAAAGTTTGTTGT  250
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTTATTCACGTCCATC-TTTCTCCTTTCTCCTAATTGCAAAGTTTGTTGT  221

seq1  TAACAGTAAGTATTAGAAACCCTGGGAAGGCTTTAAAAGACTGATGTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGTAAGTATTAGAAACCCTGGGAAGGCTTTAAAAGACTGATGTCCT  271

seq1  AGAATGTCCATAGCCATTTTTCTCCCGACAACTGCCCCTTGTTAAGATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTCCATAGCCATTTTTCTCCCGACAACTGCCCCTTGTTAAGATCA  321

seq1  CTCAAAGCAGGGAAGGAGAATCTATGTATCTGCATCAGTTTTCCTAAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGCAGGGAAGGAGAATCTATGTATCTGCATCAGTTTTCCTAAGCA  371

seq1  TAATTGAAAAATCCGTATAAACCGGTTCTAGACCGGTTTAAATAGTGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGAAAAATCCGTATAAACCGGTTCTAGACCGGTTTAAATAGTGTCT  421

seq1  GTTGTTTTAGAAACACAGCGTGATTAACACATTTTCTAATTGTCCTCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTTAGAAACACAGCGTGATTAACACATTTTCTAATTGTCCTCTCA  471

seq1  AGATGGAAAGTCACCTAGACAGCTTAATTTAAACTAAACTTGCCAATAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGAAAGTCACCTAGACAGCTTAATTTAAACTAAACTTGCCAATAGC  521

seq1  ATAAAGAAGTCTGAGTGGGATGTGATAAAACTTTACGGGCGCTATAGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGAAGTCTGAGTGGGATGTGATAAAACTTTACGGGCGCTATAGATT  571

seq1  TGTCAGGCATTAGATGCTTTGTCATATCCCACACTTCAAAACCAGTTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGGCATTAGATGCTTTGTCATATCCCACACTTCAAAACCAGTTTGA  621

seq1  AGAACAAATTACTCTCAACCTGGAAATACATTTTAAGAAATCATAGCTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAAATTACTCTCAACCTGGAAATACATTTTAAGAAATCATAGCTAA  671

seq1  TAACCAGTAATTATTATTTTCATGGTCTTTCTAGGACCAGCCTTCCTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAGTAATTATTATTTTCATGGTCTTTCTAGGACCAGCCTTCCTCTT  721

seq1  ACCATAGCTTGCAAGTCACGGGCTTCTTTGAAGAGGCACAGATCACAACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAGCTTGCAAGTCACGGGCTTCTTTGAAGAGGCACAGATCACAACC  771

seq1  CCTAGGGCAGGAGTCAGTTTTATTAGAAATATTCCCTAGAATTAAAAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGGCAGGAGTCAGTTTTATTAGAAATATTCCCTAGAATTAAAAACA  821

seq1  AAAAGGTGACAAAAATATATTATCAAGATTTTTCACTTTTCCAGCGATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTGACAAAAATATATTATCAAGATTTTTCACTTTTCCAGCGATGT  871

seq1  AATCTTATAGCATTGACATATAAGAACTTATAAAAAGCTTAGAAAATATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTATAGCATTGACATATAAGAACTTATAAAAAGCTTAGAAAATATA  921

seq1  TAAAAGATATATAGATAGATGATAGATAATAGCTAGAAAATATAGATAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGATATATAGATAGATGATAGATAATAGCTAGAAAATATAGATAGA  971

seq1  TAAATGTTAATAGACAGATACTTTTAGCTTAAATACAACCACAGCATATA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTTAATAGACAGATACTTTTAGCTTAAATACAACCACAGCATATA  1021

seq1  CTTTCACCTAAACTTCTATTTTTAATTCAATGAGAAGTTAGTCATGTTTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCACCTAAACTTCTATTTTTAATTCAATGAGAAGTTAGTCATGTTTC  1071

seq1  TAAGACATGAATGTGTCAATCCCCTTAAGCTGAATTCTTTTCCCTTGGTG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACATGAATGTGTCAATCCCCTTAAGCTGAATTCTTTTCCCTTGGTG  1121

seq1  TCTGTCATATTGTAACCAAGTTTATACCATAGCCAAGGAATTC  1193
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCATATTGTAACCAAGTTTATACCATAGCCAAGGAATTC  1164