BAC Information

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BAC

Clone NameB6Ng01-263P16
Chromosome13 (Build37)
Map Location 16,026,306 - 16,129,636
singlet/doubletdoublet
Overlap geneLOC665157, Inhba
Upstream geneEG665099, LOC670994, EG625121, Gli3
Downstream geneLOC625181, LOC665191, 5033411D12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-263P16.bB6Ng01-263P16.g
ACCGA068006GA068007
length1,150515
definitionB6Ng01-263P16.b B6Ng01-263P16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,026,306 - 16,027,469)(16,129,119 - 16,129,636)
sequence
gaattctaagggtggtaattctatgatttgctgaatgctattcactactt
attgtgacaataacaatatctttgactcaacaactggaatgacaatttaa
cctcttaaaaaatttaacctctttaaaactcacccctcatctaattttct
cgtagtgccattaaaggagagaagaaaatggtgatgctcactaaagggga
catggaaacaggagctcttatccttgctggactcacttcatatctcaagt
gagctgcttatttgatttaagagatcttaggcttaggtgagaaatttctg
agttaattttgcctgaattttctcctttgtataaactgatggttttattt
tattttattttattttattttattttattttattttattggtggtcagta
ggtcctgaactctgttttcaggaaccatgcatatttggtgttgtttgttt
gcttgtttgttgtagtttttgttttcaccagcctttccttcttagaggtc
tacagtattggggaagtggctttcagttgactgggtaagtaaaatactaa
catgtgtgtaccctttgattttcactacaaatagatcagtcataaatcct
aaagctaaacctgtaataaagattactaagattcagtaagtccccaactg
gtttgaaaatgtgttcaaatattttgtcctacccataggagtagctgtaa
taaactgcttcattataaaaatcatgcagcatgcaattattggcatcatt
gtgcccatttgttctctcattttctctttttggaaacaaaattctttgtt
ttaaaaacaactttccagtggaatttcctattttgaattatgatgtgaaa
tttaagaaaaaaataaaagcttagactgtgatacaaatgaaagtagatct
ttttaaaaataaaggattgcaaactataattataaatgactcactgttga
ttaatataataataattttctcaggactttgctgtaacatatatagaaac
gcactatggagagactcataatgtattataatttgtcaaatttattttat
ttattttttgtgaaaactaaaaaatgatgtagtgtgggatattaaaggag
atacttacctctgcaggactttaattctgaggcctagctattattttctt


agtcactaatagagtaagacaggtatcagtttttctaaggggtccacctt
cacattcttatgaaccaaaagtttaacttcatagaggttttccagtatat
tgacttgttaaagaatcttaaaagtgtgaaatgttgagtcactgttccaa
aaatgtcacaaaataaatattttctgatcttactctgagcatgttgcttc
aaaactcctggcaggtgaagaattagaacatttttagtgatgtttacagg
tgattattatatggacataggaaatgactggggcagagcaccacactcca
tttgaaatttctctcttggcttcagtattaaaagagaaaatccagtagta
acatgaagactgatagaacataacaatagaaggagaagaggaagaggaag
aagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaa
gaagaagaagaagaagaagaagaagaagaagaaagaggaggaggaggagg
aggaggaggaggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_16026306_16027469
seq2: B6Ng01-263P16.b_48_1197

seq1  GAATTCTAAGGGTGGTAATTCTATGATTTGCTGAATGCTATTCACTACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGGGTGGTAATTCTATGATTTGCTGAATGCTATTCACTACTT  50

seq1  ATTGTGACAATAACAATATCTTTGACTCAACAACTGGAATGACAATTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGACAATAACAATATCTTTGACTCAACAACTGGAATGACAATTTAA  100

seq1  CCTCTTAAAAAATTTAACCTCTTTAAAACTCACCCCTCATCTAATTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTAAAAAATTTAACCTCTTTAAAACTCACCCCTCATCTAATTTTCT  150

seq1  CGTAGTGCCATTAAAGGAGAGAAGAAAATGGTGATGCTCACTAAAGGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGTGCCATTAAAGGAGAGAAGAAAATGGTGATGCTCACTAAAGGGGA  200

seq1  CATGGAAACAGGAGCTCTTATCCTTGCTGGACTCACTTCATATCTCAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAAACAGGAGCTCTTATCCTTGCTGGACTCACTTCATATCTCAAGT  250

seq1  GAGCTGCTTATTTGATTTAAGAGATCTTAGGCTTAGGTGAGAAATTTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGCTTATTTGATTTAAGAGATCTTAGGCTTAGGTGAGAAATTTCTG  300

seq1  AGTTAATTTTGCCTGAATTTTCTCCTTTGTATAAACTGATGGTTTTATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATTTTGCCTGAATTTTCTCCTTTGTATAAACTGATGGTTTTATTT  350

seq1  TATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTGGTGGTCAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTGGTGGTCAGTA  400

seq1  GGTCCTGAACTCTGTTTTCAGGAACCATGCATATTTGGTGTTGTTTGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTGAACTCTGTTTTCAGGAACCATGCATATTTGGTGTTGTTTGTTT  450

seq1  GCTTGTTTGTTGTAGTTTTTGTTTTCACCAGCCTTTCCTTCTTAGAGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTTTGTTGTAGTTTTTGTTTTCACCAGCCTTTCCTTCTTAGAGGTC  500

seq1  TACAGTATTGGGGAAGTGGCTTTCAGTTGACTGGGTAAGTAAAATACTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTATTGGGGAAGTGGCTTTCAGTTGACTGGGTAAGTAAAATACTAA  550

seq1  CATGTGTGTACCCTTTGATTTTCACTACAAATAGATCAGTCATAAATCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTGTACCCTTTGATTTTCACTACAAATAGATCAGTCATAAATCCT  600

seq1  AAAGCTAAACCTGTAATAAAGATTACTAAGATTCAGTAAGTCCCCAACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTAAACCTGTAATAAAGATTACTAAGATTCAGTAAGTCCCCAACTG  650

seq1  GTTTGAAAATGTGTTCAAATATTTTGTCCTACCCATAGGAGTAGCTGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAAAATGTGTTCAAATATTTTGTCCTACCCATAGGAGTAGCTGTAA  700

seq1  TAAACTGCTTCATTATAAAAATCATGCAGCATGCAATTATTGGCATCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTGCTTCATTATAAAAATCATGCAGCATGCAATTATTGGCATCATT  750

seq1  GTGCCCATTTGTTCTCTCATTTTCTCTTTTTGGAAACAAAATTCTTTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCATTTGTTCTCTCATTTTCTCTTTTTGGAAACAAAATTCTTTGTT  800

seq1  TTAAAAACAACTTTCCAGTGGAATTTCCTATTTTGAATTATGATGTGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAACAACTTTCCAGTGGAATTTCCTATTTTGAATTATGATGTGAAA  850

seq1  TTTAAGAAAAAAATAAAAGCTTAGACTGTGATACAAATGAAAGTAGATCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGAAAAAAATAAAAGCTTAGACTGTGATACAAATGAAAGTAGATCT  900

seq1  TTTTAAAAATAAAGGATTGCAAACTATAATTATAAATGACTCACTGTTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAATAAAGGATTGCAAACTATAATTATAAATGACTCACTGTTGA  950

seq1  TTAATATAATAATAATTTTCTCAGGGACTTTGCTGTAACATATATAGAAA  1000
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTAATATAATAATAATTTTCTCA-GGACTTTGCTGTAACATATATAGAAA  999

seq1  CGCCACTATGGAGAGACTCATAAATGTATTATAATTTGTCAAATTTTATT  1050
      || |||||||||||||||||| ||||||||||||||||||||| ||||||
seq2  CG-CACTATGGAGAGACTCAT-AATGTATTATAATTTGTCAAA-TTTATT  1046

seq1  TTATTTTATTTTTTGTGAAAAACTAAAAAAAATGGATGTAGTGTGGG-TA  1099
      ||| ||||||||||||| ||||||||||||    ||||||||||||| ||
seq2  TTA-TTTATTTTTTGTG-AAAACTAAAAAA---TGATGTAGTGTGGGATA  1091

seq1  TT-AAGGAGATAACTTACTTCTGCAGGACTTTAGTTTCTGAGGCCCTAAG  1148
      || |||||||| |||||| ||||||||||||||  ||||||||||     
seq2  TTAAAGGAGAT-ACTTACCTCTGCAGGACTTTA-ATTCTGAGGCC----T  1135

seq1  AAATATTTATTTTCTT  1164
      |  || ||||||||||
seq2  AGCTA-TTATTTTCTT  1150


seq1: chr13_16129119_16129636
seq2: B6Ng01-263P16.g_66_586 (reverse)

seq1  CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCT---TTCTTCTTCTTCTTC  47
      ||||||||||||||||||||||||||||||||   |||||||||||||||
seq2  CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTTCTTCTTCTTCTTCTTC  50

seq1  TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT  97
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT  100

seq1  CTTCTTCTTCTTCTTCTTCCTCTTCCTCTTCTCCTTCTATTGTTATGTTC  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTTCTTCTTCTTCCTCTTCCTCTTCTCCTTCTATTGTTATGTTC  150

seq1  TATCAGTCTTCATGTTACTACTGGATTTTCTCTTTTAATACTGAAGCCAA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGTCTTCATGTTACTACTGGATTTTCTCTTTTAATACTGAAGCCAA  200

seq1  GAGAGAAATTTCAAATGGAGTGTGGTGCTCTGCCCCAGTCATTTCCTATG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAATTTCAAATGGAGTGTGGTGCTCTGCCCCAGTCATTTCCTATG  250

seq1  TCCATATAATAATCACCTGTAAACATCACTAAAAATGTTCTAATTCTTCA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATATAATAATCACCTGTAAACATCACTAAAAATGTTCTAATTCTTCA  300

seq1  CCTGCCAGGAGTTTTGAAGCAACATGCTCAGAGTAAGATCAGAAAATATT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCAGGAGTTTTGAAGCAACATGCTCAGAGTAAGATCAGAAAATATT  350

seq1  TATTTTGTGACATTTTTGGAACAGTGACTCAACATTTCACACTTTTAAGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGTGACATTTTTGGAACAGTGACTCAACATTTCACACTTTTAAGA  400

seq1  TTCTTTAACAAGTCAATATACTGGAAAACCTCTATGAAGTTAAACTTTTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAACAAGTCAATATACTGGAAAACCTCTATGAAGTTAAACTTTTG  450

seq1  GTTCATAAGAATGTGAAGGTGGACCCCTTAGAAAAACTGATACCTGTCTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATAAGAATGTGAAGGTGGACCCCTTAGAAAAACTGATACCTGTCTT  500

seq1  ACTCTATTAGTGACTGAATTC  518
      |||||||||||||||||||||
seq2  ACTCTATTAGTGACTGAATTC  521


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