BAC Information

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BAC

Clone NameB6Ng01-264B23
Chromosome13 (Build37)
Map Location 55,575,779 - 55,576,819
singlet/doubletsinglet
Overlap geneDbn1
Upstream geneLOC100040543, 4732471D19Rik, 4833439L19Rik, Arl10, D13Wsu177e, Higd2a, Cltb, Ubxd8, Rn4.5s-ps3, Rnf44, BC040758, Gprin1, Sncb, Eif4e1b, Tspan17, Unc5a, Hk3, Uimc1, LOC622707, Zfp346, Fgfr4, Nsd1, Rab24, Prelid1, Mxd3, Lman2, Rgs14, Slc34a1, Pfn3, F12, Gprk6, Prr7
Downstream genePdlim7, Dok3, Ddx41, BC021381, Tmed9, B4galt7, Caml, Ddx46, B230219D22Rik, 2310047H23Rik, Pcbd2, Catsper3, Pitx1, H2afy, BC027057, Neurog1, Cxcl14, LOC100040926, AU042651
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-264B23.bB6Ng01-264B23.g
ACCGA068109GA068110
length1,1971,050
definitionB6Ng01-264B23.b B6Ng01-264B23.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttctctcccatgcaggtgtgttacctttgaattctgcctcagc
taactggcaaaaggcttttctattgacaggtgaatatttatacacagtgc
acaatgaccttatccctacaacttccccactacatggcattacctaccat
gttggtctgactctgacacctcctccatctgattcctcatgttgagtcct
catgtggtcaactgagaccttccctcttttagggtacggaagtcccgcct
tattctcttctgtccagttctttaatgaccaatcagaaaataatggaggg
cagtgttttacaaaataccaaatcaggaaatgcttcataataatgccaat
accaattctggactacatttggatctctgggtacagaattcatcacttaa
atacacagtgctcaaaaacatcctcaatattgcccctttttagtctagaa
aaggactttctcttagattagtaaggtatatataataagaacagttatgg
aagctatcaggtaaaattactgttgctaactgtttctaatgctttgtctt
atttagactctcacaagcattgtttccagacactgagggtccatagctgg
ctttgatcaagaattgccgtgctgggcgtggtggcacacgcctttaatcc
cagcactcgggaggcagaggcaggcagatttctgagttcaagaccagcct
ggtctacaaagtgagttccaggacagctagggttatacagagaaaccctg
tcttgaaaaaaatcaaaacaaaaaaccaaaaaaaaaaaaaacaaaaacaa
aacccaaaaaataaaaattaatcattgggctggagagatggctcagcagt
taagagcactgactgctcttccagaagtcctgagtttcaattcccagcaa
ccacatgatggctcataaccatctgtaatgggatccgatgcccttcttct
ggtgtgtcttgaagacagctaccatgtactcaatatacataaataattct
aaaaataataagtcagggttttctatttctacacaaatcaatcatgacca
gagcagttgggggaggaaaaggcttaattcaccttataccttcaattggc
tgttttcacgacgatggtcaggactggactccagccagtcaggatcagga
ctgtagccagaccatgcaggggctcgtgcattactgcccttgacctc
gaattccagaattcccatcattcacccggggatactacctggaggcttgt
tgtaaaatacaggaggcggaacctttgcacatggctcttctgattgggcg
aactcttcctcctgtgactgactgaagtatccttcgctggcctgctgggg
tttgttatttggttttgttttgtttgtttatttagttagtttaataaaag
cttaggtcaccaggacccaactgtcaggacaacagctgatctatcaggcc
tgagcctgtttccccagcaaccactcttggaatccttggttgctggggaa
acacagatgcctgccagggaacgaatggcagagatggaaaggggcgtggc
atagagctgcttctcaatatggatctacaagcaatccgccctccccctcc
gcactgaatactgtccctcccaccaggctccccctgtcccacctgggtcc
cctccttttgagtggtctctccattggtcagcaggtgaggttctggctcc
agctcctgctccagcacctgatctacctcctctagagctgagggcatagt
taggacctgggaggcagccagcgtttctcctacttcctcctctgggtcac
agaaggtggctggaggttctggcagctcatcaaaattaagaaggttagca
cagccttcgcctaccggcggcagcggctcctgagcggcctcattcagcag
gggcacctctgccagggaggcctcagcacctgagggtggtgtgggcaccc
tgggttcagcctgaagtgttgaggcctcttccccgttgccaggccataga
tcaatgaggctggcagcggcaggggtgacgttgttggcaatagtggtgtc
agtagtggcagtggtggtctcaatggtgtcagctgcatggacatcagcta
ctgaggtgacagaggcagcaggctccgcaaggggcagccagggccagcct
gcctctggagattctgtgccacatcgagttcctcccaggggctgcttggc
aacaagggaggttcctgttgccttgaaggggctctgcccgcaccagccag

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_55575779_55576819
seq2: B6Ng01-264B23.g_68_1117

seq1  GAATTCCAGAATTCCCATCATTCACCCGGGGATACTACCTGGAGGCTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAATTCCCATCATTCACCCGGGGATACTACCTGGAGGCTTGT  50

seq1  TGTAAAATACAGGAGGCGGAACCTTTGCACATGGCTCTTCTGATTGGGCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAATACAGGAGGCGGAACCTTTGCACATGGCTCTTCTGATTGGGCG  100

seq1  AACTCTTCCTCCTGTGACTGACTGAAGTATCCTTCGCTGGCCTGCTGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTCCTCCTGTGACTGACTGAAGTATCCTTCGCTGGCCTGCTGGGG  150

seq1  TTTGTTATTTGGTTTTGTTTTGTTTGTTTATTTAGTTAGTTTAATAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTATTTGGTTTTGTTTTGTTTGTTTATTTAGTTAGTTTAATAAAAG  200

seq1  CTTAGGTCACCAGGACCCAACTGTCAGGACAACAGCTGATCTATCAGGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGTCACCAGGACCCAACTGTCAGGACAACAGCTGATCTATCAGGCC  250

seq1  TGAGCCTGTTTCCCCAGCAACCACTCTTGGAATCCTTGGTTGCTGGGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTGTTTCCCCAGCAACCACTCTTGGAATCCTTGGTTGCTGGGGAA  300

seq1  ACACAGATGCCTGCCAGGGAACGAATGGCAGAGATGGAAAGGGGCGTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGATGCCTGCCAGGGAACGAATGGCAGAGATGGAAAGGGGCGTGGC  350

seq1  ATAGAGCTGCTTCTCAATATGGATCTACAAGCAATCCGCCCTCCCCCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGCTGCTTCTCAATATGGATCTACAAGCAATCCGCCCTCCCCCTCC  400

seq1  GCACTGAATACTGTCCCTCCCACCAGGCTCCCCCTGTCCCACCTGGGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGAATACTGTCCCTCCCACCAGGCTCCCCCTGTCCCACCTGGGTCC  450

seq1  CCTCCTTTTGAGTGGTCTCTCCATTGGTCAGCAGGTGAGGTTCTGGCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTTTGAGTGGTCTCTCCATTGGTCAGCAGGTGAGGTTCTGGCTCC  500

seq1  AGCTCCTGCTCCAGCACCTGATCTACCTCCTCTAGAGCTGAGGGCATAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTGCTCCAGCACCTGATCTACCTCCTCTAGAGCTGAGGGCATAGT  550

seq1  TAGGACCTGGGAGGCAGCCAGCGTTTCTCCTACTTCCTCCTCTGGGTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACCTGGGAGGCAGCCAGCGTTTCTCCTACTTCCTCCTCTGGGTCAC  600

seq1  AGAAGGTGGCTGGAGGTTCTGGCAGCTCATCAAAATTAAGAAGGTTAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGTGGCTGGAGGTTCTGGCAGCTCATCAAAATTAAGAAGGTTAGCA  650

seq1  CAGCCTTCGCCTACCGGCGGCAGCGGCTCCTGAGCGGCCTCATTCAGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTCGCCTACCGGCGGCAGCGGCTCCTGAGCGGCCTCATTCAGCAG  700

seq1  GGGCACCTCTGCCAGGGAGGCCTCAGCACCTGAGGGTGGTGTGGGCACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACCTCTGCCAGGGAGGCCTCAGCACCTGAGGGTGGTGTGGGCACCC  750

seq1  TGGGTTCAGCCTGAAGTGTTGAGGCCTCTTCCCCGTTGCCAGGCCATAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTCAGCCTGAAGTGTTGAGGCCTCTTCCCCGTTGCCAGGCCATAGA  800

seq1  TCAATGAGGCTGGCAGCGGCAGGGGTGACGTTGTTGGCAATAGTGGTGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGAGGCTGGCAGCGGCAGGGGTGACGTTGTTGGCAATAGTGGTGTC  850

seq1  AGTAGTGGCAGTGGTGGTCTCAATGGTGTCAGCTGCATGGACATCAGCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTGGCAGTGGTGGTCTCAATGGTGTCAGCTGCATGGACATCAGCTA  900

seq1  CTGAGGTGACAGAGGCAGCAGGCTCCGC-AGGGGCAGCCAGGG-CAGCCT  948
      |||||||||||||||||||||||||||| |||||||||||||| ||||||
seq2  CTGAGGTGACAGAGGCAGCAGGCTCCGCAAGGGGCAGCCAGGGCCAGCCT  950

seq1  G-CTCTGGAGATTCTGTG-CACATCGAG-TCCTCCAGGGGGCTGCTTTGC  995
      | |||||||||||||||| ||||||||| ||||||  |||||||||| ||
seq2  GCCTCTGGAGATTCTGTGCCACATCGAGTTCCTCCCAGGGGCTGCTTGGC  1000

seq1  AACAGGGGAGGTTCCTG-TGCC-TGAGGGGGCTCTG-CCGCA-CAGCCAG  1041
      |||| |||||||||||| |||| ||| ||||||||| ||||| |||||||
seq2  AACAAGGGAGGTTCCTGTTGCCTTGAAGGGGCTCTGCCCGCACCAGCCAG  1050