BAC Information

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BAC

Clone NameB6Ng01-264N11
Chromosome13 (Build37)
Map Location 54,817,050 - 54,818,251
singlet/doubletsinglet
Overlap geneBC040758
Upstream geneE130119H09Rik, Drd1a, Sfxn1, Hrh2, LOC100040535, Cplx2, Thoc3, LOC100040543, 4732471D19Rik, 4833439L19Rik, Arl10, D13Wsu177e, Higd2a, Cltb, Ubxd8, Rn4.5s-ps3, Rnf44
Downstream geneGprin1, Sncb, Eif4e1b, Tspan17, Unc5a, Hk3, Uimc1, LOC622707, Zfp346, Fgfr4, Nsd1, Rab24, Prelid1, Mxd3, Lman2, Rgs14, Slc34a1, Pfn3, F12, Gprk6, Prr7, Dbn1, Pdlim7, Dok3, Ddx41, BC021381, Tmed9, B4galt7, Caml, Ddx46, B230219D22Rik, 2310047H23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-264N11.bB6Ng01-264N11.g
ACCGA068644GA068645
length1,194721
definitionB6Ng01-264N11.b B6Ng01-264N11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctccaccagcatcaatgaggtatctccggggtcttagtggggcag
ggcatggggagggcatccaagatactactcagtagagcgagacctggaaa
ctggtctgggaggtgcagggccataacaacaggggcgtcttttttacagg
aaagcacttcagattagaaatctctcagttgtaggaaaagtacacagaga
aaggtgattatcgcatatttctgaagaatggaggtatgctgatttagaca
gtgtcggtggtgacagtgttacctatgcctgtcacatctgcgtgactgct
gtctctctgtcactccatctctgtgtccctgctgtctctgtgtcactgcc
atctttctatgtcactgccatctctgtgtcaatccgtttttctgtgtcac
tctatctctctgtcactgctgtctttgtgtcactccatctctgtgtcact
ccatcctgtctttctgtgtcacagccatctctctgtcactccatctctct
gtcactgcagtctgtgttactccatcccatctctctgtgtcattccatct
ctgtgtcactctctgtcactgctgtctctctgtcactgaagtctctgtgt
cactctgtctctctgtgtcactccatctctctgtcactgctgtctctctg
tgtcactgctgtctccctgtcactgctgtctctctgtcactggctgcctc
tgccctgaggtgtgcagcctagtgtctctggctctgagctatctcactgc
ctctgcagcttcagcagaaagactggccatttctctgtggtctcagcaca
cactggcctggctttccatccagtcactttaggccacctagagaggatgc
agaggtctggactgacaggaatcctcaggcagtggtgagactggcctcag
aggctagagggtagatagagcatggggagggtagagacaggcagcagcct
gacttctgagggccactgaaactgtttgagccatgttctgggaagaatgg
gaaactttcagaagccaagtgtgagggatcgaccgtggcatgggccaata
agggctacatggagcttcaggattatctggagtaggggagagcataccca
ggctagaatgctcctctcacttatgactacctgtacatctcaagctcatc
ggtggttgtaggctgtcctgtctggcaattccatctaaccatct
gaattcccaccagggcactggtagagcgagtagtagccaaagtttatttt
tagcaggaaagaaagcacaagtggaaaatagactctaggagggaccgagg
cgtgggtacctgagtgggctgcctgggcttctacaccttgctctactggt
tctccgttttctgtgcccaaagtaagctttcctagcctaggagtttcctg
gactagaagagtctctttctctctctctctctctctctctctctctctct
ctctctctctctgtctctgtgtgggtggatgcacacacacgcacacacac
atatatattgtgtgcctccctgagagtgtgtgagaaatacagatcctctc
acacactagctaaagtgagacatacacggtggtgaacaagctggcaaatg
tatctagggtgtgtgtctctgatgcggggggtctctatctgtgggtcgcg
ctcccccacttggtctttgtctgacctctgaaagaaactatgagaacaca
tgtaactatccacagatcactgatacacacagagatacacatctgtgaga
ggggcgtgtctgctcacacacatatgtgtctctctcgagcaaatatccta
cccacacgcactctctctcacactgagagtgtgtgtgtgagagcgcgtag
agacgaaatatatatattatcagatctgatggtgtgtaacagctctagag
atacacactttccaagcatcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_54817050_54818251
seq2: B6Ng01-264N11.b_49_1242

seq1  GAATTCTCCACCAGCATCAATGAGGTATCTCCGGGGTCTTAGTGGGGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCACCAGCATCAATGAGGTATCTCCGGGGTCTTAGTGGGGCAG  50

seq1  GGCATGGGGAGGGCATCCAAGATACTACTCAGTAGAGCGAGACCTGGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGGGGAGGGCATCCAAGATACTACTCAGTAGAGCGAGACCTGGAAA  100

seq1  CTGGTCTGGGAGGTGCAGGGCCATAACAACAGGGGCGTCTTTTTTACAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTGGGAGGTGCAGGGCCATAACAACAGGGGCGTCTTTTTTACAGG  150

seq1  AAAGCACTTCAGATTAGAAATCTCTCAGTTGTAGGAAAAGTACACAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACTTCAGATTAGAAATCTCTCAGTTGTAGGAAAAGTACACAGAGA  200

seq1  AAGGTGATTATCGCATATTTCTGAAGAATGGAGGTATGCTGATTTAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGATTATCGCATATTTCTGAAGAATGGAGGTATGCTGATTTAGACA  250

seq1  GTGTCGGTGGTGACAGTGTTACCTATGCCTGTCACATCTGCGTGACTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCGGTGGTGACAGTGTTACCTATGCCTGTCACATCTGCGTGACTGCT  300

seq1  GTCTCTCTGTCACTCCATCTCTGTGTCCCTGCTGTCTCTGTGTCACTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCTGTCACTCCATCTCTGTGTCCCTGCTGTCTCTGTGTCACTGCC  350

seq1  ATCTTTCTATGTCACTGCCATCTCTGTGTCAATCCGTTTTTCTGTGTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCTATGTCACTGCCATCTCTGTGTCAATCCGTTTTTCTGTGTCAC  400

seq1  TCTATCTCTCTGTCACTGCTGTCTTTGTGTCACTCCATCTCTGTGTCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTCTCTGTCACTGCTGTCTTTGTGTCACTCCATCTCTGTGTCACT  450

seq1  CCATCCTGTCTTTCTGTGTCACAGCCATCTCTCTGTCACTCCATCTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTGTCTTTCTGTGTCACAGCCATCTCTCTGTCACTCCATCTCTCT  500

seq1  GTCACTGCAGTCTGTGTTACTCCATCCCATCTCTCTGTGTCATTCCATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGCAGTCTGTGTTACTCCATCCCATCTCTCTGTGTCATTCCATCT  550

seq1  CTGTGTCACTCTCTGTCACTGCTGTCTCTCTGTCACTGAAGTCTCTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCACTCTCTGTCACTGCTGTCTCTCTGTCACTGAAGTCTCTGTGT  600

seq1  CACTCTGTCTCTCTGTGTCACTCCATCTCTCTGTCACTGCTGTCTCTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGTCTCTCTGTGTCACTCCATCTCTCTGTCACTGCTGTCTCTCTG  650

seq1  TGTCACTGCTGTCTCCCTGTCACTGCTGTCTCTCTGTCACTGGCTGCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTGCTGTCTCCCTGTCACTGCTGTCTCTCTGTCACTGGCTGCCTC  700

seq1  TGCCCTGAGGTGTGCAGCCTAGTGTCTCTGGCTCTGAGCTATCTCACTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTGAGGTGTGCAGCCTAGTGTCTCTGGCTCTGAGCTATCTCACTGC  750

seq1  CTCTGCAGCTTCAGCAGAAAGACTGGCCATTTCTCTGTGGTCTCAGCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCAGCTTCAGCAGAAAGACTGGCCATTTCTCTGTGGTCTCAGCACA  800

seq1  CACTGGCCTGGCTTTCCATCCAGTCACTTTAGGCCACCTAGAGAGGATGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGCCTGGCTTTCCATCCAGTCACTTTAGGCCACCTAGAGAGGATGC  850

seq1  AGAGGTCTGGACTGACAGGAATCCTCAGGCAGTGGTGAGACTGGCCTCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTCTGGACTGACAGGAATCCTCAGGCAGTGGTGAGACTGGCCTCAG  900

seq1  AGGCTAGAGGGTAGATAGAGCATGGGGAGGGTAGAGACAGGCAGCAGCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAGAGGGTAGATAGAGCATGGGGAGGGTAGAGACAGGCAGCAGCCT  950

seq1  GACTTCTGAGGGCCACTGAAACTGTTTGAGCCATGTTCTGGGAAGAATGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCTGAGGGCCACTGAAACTGTTTGAGCCATGTTCTGGGAAGAATGG  1000

seq1  GAAACTTTCAGAAGCCAAGTGTGAGGGAATCCGACCGTGGCCATGGGCCA  1050
      ||||||||||||||||||||||||||||   ||||||||| |||||||||
seq2  GAAACTTTCAGAAGCCAAGTGTGAGGGA--TCGACCGTGG-CATGGGCCA  1047

seq1  --TAGGGCTACAGGGAGCCTTCAGGAATATCT-GAGTAGGGGAGAGCCAT  1097
         ||||||||| |||| |||||||| ||||| ||||||||||||| |||
seq2  ATAAGGGCTACATGGAG-CTTCAGGATTATCTGGAGTAGGGGAGAG-CAT  1095

seq1  ACCCAGGCTAGAATGCT-CTCTCACTTATGGCCTTAACTGTACATCTCAG  1146
      ||||||||||||||||| |||||||||||| |  || |||||||||||| 
seq2  ACCCAGGCTAGAATGCTCCTCTCACTTATGAC--TACCTGTACATCTCAA  1143

seq1  GCTCATCGGGTGTGTGTGTGGGGCTGTCCTGCTGGGCATTCCCATCTTAA  1196
      ||||||||   |||  |||  ||||||||||   |||| | ||||| |||
seq2  GCTCATCG---GTGGTTGT-AGGCTGTCCTGTCTGGCAATTCCATC-TAA  1188

seq1  CCATCT  1202
      ||||||
seq2  CCATCT  1194