BAC Information

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BAC

Clone NameB6Ng01-267B18
Chromosome13 (Build37)
Map Location 82,555,872 - 82,557,037
singlet/doubletsinglet
Overlap geneLOC238756
Upstream geneGpr98, Lysmd3, Polr3g, 2900024O10Rik, Cetn3
Downstream geneLOC667018
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-267B18.bB6Ng01-267B18.g
ACCGA070328GA070329
length1,1931,159
definitionB6Ng01-267B18.b B6Ng01-267B18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaattaaggaataccaaatggctgagaagtacctaaagatatg
ttcatcatccttagtcatcagggaattacaaattcaaacaaccctgagat
tccacctcacaacagtcacaatggttaagatcaaaacctcaggtgacagc
agatgctaaggaggatgtagagaaagggaaaaactccttcatttctggta
ggattgcaagctggtaaaaccactctggaaatcaggatggtggttttcag
aaaattgcacttgaggacccagcaatacctctcctgggcatatacccaga
agatgctccaacttgtaatatggacatatgctccactatgatcatagcag
acttatttataataggcagaagctggaaagaacccagatgtccctcaaca
gaggaatggacacagaaaatgtggtacatttacacaatggagttatatgt
agatattaaaaacaatgaatctatgaaattctcaggcaaatgggtggatc
tgaaggatatcatcctgagtgaggtaatccagtcacgaaagaactcgcat
tatatacactcattgataagtggatattatccaagaagctcagaataccc
aggatacaatccacaaaccacatgaaactcaagaagaaggaagaccaaag
tttggatacctcgttccttctaagaggggggaacaaaataaccatggaag
gagttacagagacaaagtgtgtagcagagactaaaggaatgatcatatag
agactgccccacctggggatccatccccaaaacaccaaacccagacatta
ttgtggatgccaacaagtgcttgctgtcaggagcctgatatagttgtctc
ctcagaggctctgccagtgcctgactaatacagaagtggatgctcacagc
catccactggacttaaccaggatccccagtaaaggagctagagaaaggac
ccaaggatctgaaagttttgtagcccccataggatgaagaaaaaatatga
actaaccagtaccccaagagctccagcaagtaaacacaagcaagagttca
catggtgggactcgtgctctagctgcataaggtaacggaatatgatttag
tgtcatcatcagaggagtctgtctgtgcagctctatgctcggctaagggg
atgacgaattcaggaaacggaatgggaggcttgttgtagaacg
gaattcctatgaaaaattctgaatatttttagctttttctgaatatttta
gcgaaacaaacagaaatggctggcatgtgtgtctcaacattgctttgctt
ggaatgtgtaaacatgacatttagtaattaggtaccggcatataccaaag
atctaataaagtatgtaacatttagacatataggccttttctattacagc
agaattaatatttactttaaaactatagttattctctctcagtaatgctg
acagcaaacatttttcctttcattctctatagtttctctgccctttgtct
ctttctgttgattctgtgtagtctttgggcctcacacattctgtggggtg
atcgcactcctacaactaaagtcaatgcttgtcctctgggtcatagcttc
cagaatgtctggatcacagcctaaatgacctgcttctaccattttctaaa
acaaaaggacatttttcttctgctttctttcccagttgaatctgaatata
caatagagagagaagccaggacctaggcattaaaccaaggactcagcaga
atggactgtctctcaacagccatgtgaacttaggtgctgtctccacatcg
aggtaccactttgaggggcattctacatcaaattttattgtctcaattta
gaatttacttcagtctcaactatggagcaaatcacggagccttcttctaa
attatgcatttcaggttattgtgacccttgaagctaggaaattgtgctta
ttcatggtgaattttcagattcaaagatgggagaaaaaagtttctgttcc
ctgattatgaagaacctcagctgacaaaaatactgtaaaaacacccctaa
actcccgggacagtgtggcagtgtcagctataaaatattctggtttgttc
aatgtacaatataagaatttaaaaagaatttttgctcagaaaataaaaca
ccactataatgatctggggtatgcatatttccctacaaaataaatagtca
cttaccccttggcattagcattagggttaagaagagaaagagctttctta
cacatttttcagtatgacttcatgccactgcctcagccaagtgtgtgggt
acactggacagcctttaagctaccatgcttattcgtcctcagctattctt
tcttcctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_82555872_82557037
seq2: B6Ng01-267B18.g_66_1224 (reverse)

seq1  TAAGG-AGAAAGAATAGCTGAAAGAACAGAATAGAGCATTGGGTAGGTTT  49
      ||||| ||||||||||||||  || || ||||| |||||  ||||| || 
seq2  TAAGGAAGAAAGAATAGCTG--AGGAC-GAATA-AGCAT--GGTAGCTTA  44

seq1  AAGGCGCTGT-CAGTGTACAC-CACACTTGGCTTGAGGCAGTGGCATGAA  97
      |||  ||||| |||||||| | |||||||||| ||||||||||||||| |
seq2  AAG--GCTGTCCAGTGTACCCACACACTTGGC-TGAGGCAGTGGCATG-A  90

seq1  AGTCAATACTGAAAAATGTGGTAAGGAAAGCTCTTTCTTCTTCTT-ACCC  146
      |||| |||||||||||||| |||| |||||||||||| ||||||| ||||
seq2  AGTC-ATACTGAAAAATGT-GTAA-GAAAGCTCTTTC-TCTTCTTAACCC  136

seq1  TAATGCTAATGCCAAAGGGTAAGTGACTATTTA-TTTGTAGGGAAATATG  195
      ||||||||||||||| ||||||||||||||||| ||||||||||||||||
seq2  TAATGCTAATGCCAAGGGGTAAGTGACTATTTATTTTGTAGGGAAATATG  186

seq1  CATACCCCAGATCATTATAGTGGTGTTTTATTTTCTGAGCAAAAATTCTT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCCCAGATCATTATAGTGGTGTTTTATTTTCTGAGCAAAAATTCTT  236

seq1  TTT-AATTCTTATATTGTACATTGAACAAACCAGAATATTTTATAGCTGA  294
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTCTTATATTGTACATTGAACAAACCAGAATATTTTATAGCTGA  286

seq1  CACTGCCACACTGTCCCGGGAGTTTAGGGGTGTTTTTACAGTATTTTTGT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCCACACTGTCCCGGGAGTTTAGGGGTGTTTTTACAGTATTTTTGT  336

seq1  CAGCTGAGGTTCTTCATAATCA-GGAACAGAAACTTTTTTCTCCCATCTT  393
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CAGCTGAGGTTCTTCATAATCAGGGAACAGAAACTTTTTTCTCCCATCTT  386

seq1  TGAATCTGAAAATTCACCATGAATAAGCACAATTTCCTAGCTTCAAGGGT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTGAAAATTCACCATGAATAAGCACAATTTCCTAGCTTCAAGGGT  436

seq1  CACAATAACCTGAAATGCATAATTTAGAAGAAGGCTCCGTGATTTGCTCC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATAACCTGAAATGCATAATTTAGAAGAAGGCTCCGTGATTTGCTCC  486

seq1  ATAGTTGAGACTGAAGTAAATTCTAAATTGAGACAATAAAATTTGATGTA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTGAGACTGAAGTAAATTCTAAATTGAGACAATAAAATTTGATGTA  536

seq1  GAATGCCCCTCAAAGTGGTACCTCGATGTGGAGACAGCACCTAAGTTCAC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCCCCTCAAAGTGGTACCTCGATGTGGAGACAGCACCTAAGTTCAC  586

seq1  ATGGCTGTTGAGAGACAGTCCATTCTGCTGAGTCCTTGGTTTAATGCCTA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGTTGAGAGACAGTCCATTCTGCTGAGTCCTTGGTTTAATGCCTA  636

seq1  GGTCCTGGCTTCTCTCTCTATTGTATATTCAGATTCAACTGGGAAAGAAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTGGCTTCTCTCTCTATTGTATATTCAGATTCAACTGGGAAAGAAA  686

seq1  GCAGAAGAAAAATGTCCTTTTGTTTTAGAAAATGGTAGAAGCAGGTCATT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGAAAAATGTCCTTTTGTTTTAGAAAATGGTAGAAGCAGGTCATT  736

seq1  TAGGCTGTGATCCAGACATTCTGGAAGCTATGACCCAGAGGACAAGCATT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTGTGATCCAGACATTCTGGAAGCTATGACCCAGAGGACAAGCATT  786

seq1  GACTTTAGTTGTAGGAGTGCGATCACCCCACAGAATGTGTGAGGCCCAAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTAGTTGTAGGAGTGCGATCACCCCACAGAATGTGTGAGGCCCAAA  836

seq1  GACTACACAGAATCAACAGAAAGAGACAAAGGGCAGAGAAACTATAGAGA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACACAGAATCAACAGAAAGAGACAAAGGGCAGAGAAACTATAGAGA  886

seq1  ATGAAAGGAAAAATGTTTGCTGTCAGCATTACTGAGAGAGAATAACTATA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGGAAAAATGTTTGCTGTCAGCATTACTGAGAGAGAATAACTATA  936

seq1  GTTTTAAAGTAAATATTAATTCTGCTGTAATAGAAAAGGCCTATATGTCT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAAAGTAAATATTAATTCTGCTGTAATAGAAAAGGCCTATATGTCT  986

seq1  AAATGTTACATACTTTATTAGATCTTTGGTATATGCCGGTACCTAATTAC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTACATACTTTATTAGATCTTTGGTATATGCCGGTACCTAATTAC  1036

seq1  TAAATGTCATGTTTACACATTCCAAGCAAAGCAATGTTGAGACACACATG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTCATGTTTACACATTCCAAGCAAAGCAATGTTGAGACACACATG  1086

seq1  CCAGCCATTTCTGTTTGTTTCGCTAAAATATTCAGAAAAAGCTAAAAATA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCATTTCTGTTTGTTTCGCTAAAATATTCAGAAAAAGCTAAAAATA  1136

seq1  TTCAGAATTTTTCATAGGAATTC  1166
      |||||||||||||||||||||||
seq2  TTCAGAATTTTTCATAGGAATTC  1159