BAC Information

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BAC

Clone NameB6Ng01-267E11
Chromosome13 (Build37)
Map Location 28,980,696 - 29,077,850
singlet/doubletdoublet
Overlap geneSox4
Upstream geneLOC666321, LOC195243, LOC100041036, Prl4a1, Prl5a1, LOC100042388, LOC100042393, LOC100042399, Ppia-ps13_297.1, LOC626683, 2610307P16Rik
Downstream geneLOC100041135, Cdkal1, E2f3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-267E11.bB6Ng01-267E11.g
ACCGA070452GA070453
length777776
definitionB6Ng01-267E11.b B6Ng01-267E11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,077,074 - 29,077,850)(28,980,696 - 28,981,471)
sequence
gaattctctataaataatttaaaagggtactctaggtggagtgagggtca
catgcagaagagtgagagcacgcggtctgtttaaatatgttcagtatgag
tgaaacacagctgttgcctcgtggtttgagcactgaaggtttatcactac
aacaacgcttgacttaactagcgcagttctggaaaggcatggaagtcttt
ccatgactgttacagacttgagcttattaggcatggtatggatatcactc
taggaacactatcacttttatccaagaagggagagagctgcagagaggaa
gaagcccctacatctgctatagactgaatcactcggttctcaggcagtgg
ccttcaggaggtggcgataggaacctcaagtcctgcccatccctcccttc
ctccttcctaggaagatatactctaaagataattggaaaagaactgaatc
agtgggataggctcctggtcctcaatagaaaggacatacagttgtatctt
caagagcttgcctgaatgataacagcctataaagttcagacaccgacatg
atccaacaagaaaaataaaactgaccaagaaagagcagcacaaagatgtt
ctgttccagtcggtattgcccagaggggatcttcctatgataccagaaat
gtgccagtctctatactgtttagtgtgatgtcagctagtaaccacacatg
aggactttcttttctcccttccttctctccttccttcttcctcctttgtg
tggtgtgtgtgtgtgtgtgtgtgtgtg

gaattctgttcagtaataacaaatgtttagggactgcacttaattagcta
tgcaatagtttaagatcagttatattgtgctcactgagagagaagtagga
ataaatagaatcatatattacctatgagagctgtatacacaggttcataa
tggtcatatccagttccttcctctaatgacaacagtcagcaaggcaatcg
gaaatactaactagaaatctctcttttgaaaaaggaattcaaggggctgg
agagatggctctgcagttaagagcactggctgctcttccagaggacctgg
gttcaattcccagcacccatgtgatagctcacaattgtctgtaacttcag
ttccagggaatgcaacatactctctctctccctctctctccctctctctc
cctttctctctctctctctctctcacacacacacacacacacacacatat
ttgcatataggtatatatacatacatttgtatatatgcaaaacgccaatg
catataaaataagtaaataaatcttttttaaaattgccttgttcataaaa
gaagaaaagtaaagaaaattgaattcaaaggaacaaaaaggcagaggcag
actgatcaagcaaatgcctagcatgtacaaggtcctgggttcagtcctca
atgacacattacaaaggaggaggagaaacagaaggaagatgaggaaggga
ctgagaaggaagaaaaggagaaggaaaaggaagaggaagactaagatatg
gaagatgaggaggggaaggggatgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_29077074_29077850
seq2: B6Ng01-267E11.b_42_818 (reverse)

seq1  CACACACACACACACACACACACACCACACAAAGGAGGAAGAAGGAAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACCACACAAAGGAGGAAGAAGGAAGGA  50

seq1  GAGAAGGAAGGGAGAAAAGAAAGTCCTCATGTGTGGTTACTAGCTGACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGAAGGGAGAAAAGAAAGTCCTCATGTGTGGTTACTAGCTGACAT  100

seq1  CACACTAAACAGTATAGAGACTGGCACATTTCTGGTATCATAGGAAGATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTAAACAGTATAGAGACTGGCACATTTCTGGTATCATAGGAAGATC  150

seq1  CCCTCTGGGCAATACCGACTGGAACAGAACATCTTTGTGCTGCTCTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGGGCAATACCGACTGGAACAGAACATCTTTGTGCTGCTCTTTCT  200

seq1  TGGTCAGTTTTATTTTTCTTGTTGGATCATGTCGGTGTCTGAACTTTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAGTTTTATTTTTCTTGTTGGATCATGTCGGTGTCTGAACTTTATA  250

seq1  GGCTGTTATCATTCAGGCAAGCTCTTGAAGATACAACTGTATGTCCTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTTATCATTCAGGCAAGCTCTTGAAGATACAACTGTATGTCCTTTC  300

seq1  TATTGAGGACCAGGAGCCTATCCCACTGATTCAGTTCTTTTCCAATTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAGGACCAGGAGCCTATCCCACTGATTCAGTTCTTTTCCAATTATC  350

seq1  TTTAGAGTATATCTTCCTAGGAAGGAGGAAGGGAGGGATGGGCAGGACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGTATATCTTCCTAGGAAGGAGGAAGGGAGGGATGGGCAGGACTT  400

seq1  GAGGTTCCTATCGCCACCTCCTGAAGGCCACTGCCTGAGAACCGAGTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTCCTATCGCCACCTCCTGAAGGCCACTGCCTGAGAACCGAGTGAT  450

seq1  TCAGTCTATAGCAGATGTAGGGGCTTCTTCCTCTCTGCAGCTCTCTCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTATAGCAGATGTAGGGGCTTCTTCCTCTCTGCAGCTCTCTCCCT  500

seq1  TCTTGGATAAAAGTGATAGTGTTCCTAGAGTGATATCCATACCATGCCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGATAAAAGTGATAGTGTTCCTAGAGTGATATCCATACCATGCCTA  550

seq1  ATAAGCTCAAGTCTGTAACAGTCATGGAAAGACTTCCATGCCTTTCCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCTCAAGTCTGTAACAGTCATGGAAAGACTTCCATGCCTTTCCAGA  600

seq1  ACTGCGCTAGTTAAGTCAAGCGTTGTTGTAGTGATAAACCTTCAGTGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCGCTAGTTAAGTCAAGCGTTGTTGTAGTGATAAACCTTCAGTGCTC  650

seq1  AAACCACGAGGCAACAGCTGTGTTTCACTCATACTGAACATATTTAAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACGAGGCAACAGCTGTGTTTCACTCATACTGAACATATTTAAACA  700

seq1  GACCGCGTGCTCTCACTCTTCTGCATGTGACCCTCACTCCACCTAGAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGCGTGCTCTCACTCTTCTGCATGTGACCCTCACTCCACCTAGAGTA  750

seq1  CCCTTTTAAATTATTTATAGAGAATTC  777
      |||||||||||||||||||||||||||
seq2  CCCTTTTAAATTATTTATAGAGAATTC  777


seq1: chr13_28980696_28981471
seq2: B6Ng01-267E11.g_66_841

seq1  GAATTCTGTTCAGTAATAACAAATGTTTAGGGACTGCACTTAATTAGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTCAGTAATAACAAATGTTTAGGGACTGCACTTAATTAGCTA  50

seq1  TGCAATAGTTTAAGATCAGTTATATTGTGCTCACTGAGAGAGAAGTAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATAGTTTAAGATCAGTTATATTGTGCTCACTGAGAGAGAAGTAGGA  100

seq1  ATAAATAGAATCATATATTACCTATGAGAGCTGTATACACAGGTTCATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAGAATCATATATTACCTATGAGAGCTGTATACACAGGTTCATAA  150

seq1  TGGTCATATCCAGTTCCTTCCTCTAATGACAACAGTCAGCAAGGCAATCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCATATCCAGTTCCTTCCTCTAATGACAACAGTCAGCAAGGCAATCG  200

seq1  GAAATACTAACTAGAAATCTCTCTTTTGAAAAAGGAATTCAAGGGGCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATACTAACTAGAAATCTCTCTTTTGAAAAAGGAATTCAAGGGGCTGG  250

seq1  AGAGATGGCTCTGCAGTTAAGAGCACTGGCTGCTCTTCCAGAGGACCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGGCTCTGCAGTTAAGAGCACTGGCTGCTCTTCCAGAGGACCTGG  300

seq1  GTTCAATTCCCAGCACCCATGTGATAGCTCACAATTGTCTGTAACTTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAATTCCCAGCACCCATGTGATAGCTCACAATTGTCTGTAACTTCAG  350

seq1  TTCCAGGGAATGCAACATACTCTCTCTCTCCCTCTCTCTCCCTCTCTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGGAATGCAACATACTCTCTCTCTCCCTCTCTCTCCCTCTCTCTC  400

seq1  CCTTTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACATAT  450

seq1  TTGCATATAGGTATATATACATACATTTGTATATATGCAAAACGCCAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATATAGGTATATATACATACATTTGTATATATGCAAAACGCCAATG  500

seq1  CATATAAAATAAGTAAATAAATCTTTTTTAAAATTGCCTTGTTCATAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAAAATAAGTAAATAAATCTTTTTTAAAATTGCCTTGTTCATAAAA  550

seq1  GAAGAAAAGTAAAGAAAATTGAATTCAAAGGAACAAAAAGGCAGAGGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAAGTAAAGAAAATTGAATTCAAAGGAACAAAAAGGCAGAGGCAG  600

seq1  ACTGATCAAGCAAATGCCTAGCATGTACAAGGTCCTGGGTTCAGTCCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATCAAGCAAATGCCTAGCATGTACAAGGTCCTGGGTTCAGTCCTCA  650

seq1  ATGACACATTACAAAGGAGGAGGAGAAACAGAAGGAAGATGAGGAAGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACACATTACAAAGGAGGAGGAGAAACAGAAGGAAGATGAGGAAGGGA  700

seq1  CTGAGAAGGAAGAAAAGGAGAAGGAAAAGGAAGAGGAAGACTAAGATATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAGGAAGAAAAGGAGAAGGAAAAGGAAGAGGAAGACTAAGATATG  750

seq1  GAAGATGAGGAGGGGAAGGGGATGAG  776
      ||||||||||||||||||||||||||
seq2  GAAGATGAGGAGGGGAAGGGGATGAG  776


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