BAC Information

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BAC

Clone NameB6Ng01-267F19
Chromosome13 (Build37)
Map Location 57,694,733 - 57,842,958
singlet/doubletdoublet
Overlap geneSpock1
Upstream geneTgfbi, Smad5, EG627415, Trpc7, LOC100040995
Downstream geneKlhl3, Hnrpa0, 5133401N09Rik, Ubqln1, LOC671252, Gkap1, Kif27, Hnrpk, Rmi1, LOC100041086, Slc28a3, LOC100041510
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-267F19.bB6Ng01-267F19.g
ACCGA070504GA070505
length1,2071,138
definitionB6Ng01-267F19.b B6Ng01-267F19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,694,733 - 57,695,939)(57,841,837 - 57,842,958)
sequence
gaattcatgcctagtacatttctgtatgaaatcctcaaatataataatca
ggggatggagaggtggctcagcagtgaggttctcctagagaacccaggtt
tgatttccagcacccacaatgcagctcacagccacccataactactgtct
ctgcgggcacttcacgcacatgctgcatagacatgtatgcaggcaaaaca
gtcacacacagaaaagagaaagtaatgatggttagaactaatctaaatat
ttttaaaaagagaagccctaccactaggtgtgcatgtgtgcatgtgcgtg
tgcatggggctggaggggtggttatcaggtgtcagttacggcccaacaca
gatttgaacctttggtgtcaggtactaaggatttcttggtgaaactctcc
aaggtgtactcttagcacatgcttggtaacagaatactgcaatcctctgg
aaacaactaaatctagtgttccggctacaagttgtgccaccacactgcag
gactctcggtgagctgaacagatgatgtagccatcaaggacacaacagga
cctgggaaggccatgtcatctctccagctcatcttccaggagaagctagc
gaagagtcaactggcataggccaaacatccaattaattctccaaaatgac
ttccacaaatctttcttcaaggtggggaaaaaaagaacgaactaatttat
agagagatttgttgagctctagcacaccgaattcagaagccagttaatta
gaagcttcatgtgggttttttttttaattaattttattttttaagctcat
tgcgtggtctcaattaaggtggtgatattttaattatcgtaattgtttct
gaacttgtttttgagttcaatgagtttattttttaattagctacattgat
tttgaaatccaggatcaagccgtttcgcagtccttgggtatattcaactg
gcttaactaacaaagatcaggtcaaaccgcttatgatagcaagcccaagg
ctacttcgtagatactgagagagatggtggttttattctgaattggacca
caaagattcccccttgtcacctggcaggcccacatgccttgtctgtgtct
atttcagtcccacatttagcagagttactcaatggtaggccatctatggc
caggctaggcagcatctctctctaggagctctcacgctgaaaccaggaat
gggggaa
gaattctggcttcctgcaatttaagactctatcctgggcataaatgaaat
attcagaaagcagaggagctagagatgaaacctgcagggggaaaagttta
gtttagaataaggtcttaaaattccagggatttaaagtacaggcttcgtt
ctgtgtgggcctcagctgccgggaccaggttgttagtgaggagccgtgta
cgctgtgagcctggcagttagcctggagtgcagaataaagggtttaatcc
ggaaagttcttcagccttggctctttgagatggagctctgctctggattt
gctcagtcagatgccatctagccttttatgacagttgtagctgaaagaaa
tgataacattagttacccaggaatgaagagcggaggttccttcctgagaa
cagaagattggccacagccagccgccagtctactctttctcagaagtctg
gggcccctgggaccatcagaaatgttgactctcagcctctttgtccacca
gctggttaacaatctgcatttcagcagagcagccatcttgggaagattca
tacgtataaggaagtctgagccgcaaaccgaggccactaagtggcctgga
taatttcagtaaatcttcatggcggcctgcatggagtgtgtttgtgtgga
gagacagaccctgtgcctaatatagaggagcttgccatctagggaaaaca
gacgtgacctcacaaatgagagtctccagccgccaggacacagatgagca
gaagcccggctgttctttgctttggcgggcaggtcccttctatcctcaat
aaagcagagtggagagagagagagtggagaggcattaggaagaaggcctg
tttacttagtagtctgtttacttagtaaactcatcctctatacacctcga
cacccctgctgcagagatagagttaggtccctgggagctcaaagcctcct
tgggatgtgaagataagaggaaggcaggagctacagtccagtgggaatat
gaatttcagaggttatagaagggcctcagctttgggtttctgttgcaggc
tggcttcttggaaaggcttctggagtggaagggaggtggattttagctga
gaacattcagctctacgcttgaaatagcaccagctctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_57694733_57695939
seq2: B6Ng01-267F19.b_47_1253

seq1  GAATTCATGCCTAGTACATTTCTGTATGAAATCCTCAAATATAATAATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCCTAGTACATTTCTGTATGAAATCCTCAAATATAATAATCA  50

seq1  GGGGATGGAGAGGTGGCTCAGCAGTGAGGTTCTCCTAGAGAACCCAGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATGGAGAGGTGGCTCAGCAGTGAGGTTCTCCTAGAGAACCCAGGTT  100

seq1  TGATTTCCAGCACCCACAATGCAGCTCACAGCCACCCATAACTACTGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCCAGCACCCACAATGCAGCTCACAGCCACCCATAACTACTGTCT  150

seq1  CTGCGGGCACTTCACGCACATGCTGCATAGACATGTATGCAGGCAAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGGGCACTTCACGCACATGCTGCATAGACATGTATGCAGGCAAAACA  200

seq1  GTCACACACAGAAAAGAGAAAGTAATGATGGTTAGAACTAATCTAAATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACACACAGAAAAGAGAAAGTAATGATGGTTAGAACTAATCTAAATAT  250

seq1  TTTTAAAAAGAGAAGCCCTACCACTAGGTGTGCATGTGTGCATGTGCGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAAGAGAAGCCCTACCACTAGGTGTGCATGTGTGCATGTGCGTG  300

seq1  TGCATGGGGCTGGAGGGGTGGTTATCAGGTGTCAGTTACGGCCCAACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGGGGCTGGAGGGGTGGTTATCAGGTGTCAGTTACGGCCCAACACA  350

seq1  GATTTGAACCTTTGGTGTCAGGTACTAAGGATTTCTTGGTGAAACTCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGAACCTTTGGTGTCAGGTACTAAGGATTTCTTGGTGAAACTCTCC  400

seq1  AAGGTGTACTCTTAGCACATGCTTGGTAACAGAATACTGCAATCCTCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGTACTCTTAGCACATGCTTGGTAACAGAATACTGCAATCCTCTGG  450

seq1  AAACAACTAAATCTAGTGTTCCGGCTACAAGTTGTGCCACCACACTGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACTAAATCTAGTGTTCCGGCTACAAGTTGTGCCACCACACTGCAG  500

seq1  GACTCTCGGTGAGCTGAACAGATGATGTAGCCATCAAGGACACAACAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTCGGTGAGCTGAACAGATGATGTAGCCATCAAGGACACAACAGGA  550

seq1  CCTGGGAAGGCCATGTCATCTCTCCAGCTCATCTTCCAGGAGAAGCTAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGAAGGCCATGTCATCTCTCCAGCTCATCTTCCAGGAGAAGCTAGC  600

seq1  GAAGAGTCAACTGGCATAGGCCAAACATCCAATTAATTCTCCAAAATGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTCAACTGGCATAGGCCAAACATCCAATTAATTCTCCAAAATGAC  650

seq1  TTCCACAAATCTTTCTTCAAGGTGGGGAAAAAAAGAACGAACTAATTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACAAATCTTTCTTCAAGGTGGGGAAAAAAAGAACGAACTAATTTAT  700

seq1  AGAGAGATTTGTTGAGCTCTAGCACACCGAATTCAGAAGCCAGTTAATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGATTTGTTGAGCTCTAGCACACCGAATTCAGAAGCCAGTTAATTA  750

seq1  GAAGCTTCATGTGGGTTTTTTTTTTAATTAATTTTATTTTTTAAGCTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTTCATGTGGGTTTTTTTTTTAATTAATTTTATTTTTTAAGCTCAT  800

seq1  TGCGTGGTCTCAATTAAGGTGGTGATATTTTAATTATCGTAATTGTTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTGGTCTCAATTAAGGTGGTGATATTTTAATTATCGTAATTGTTTCT  850

seq1  GAACTTGTTTTTGAGTTCAATGAGTTTATTTTTTAATTAGCTACATTGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGTTTTTGAGTTCAATGAGTTTATTTTTTAATTAGCTACATTGAT  900

seq1  TTTGAAATCCAGGATCAAGCCGTTTCGCAGTCCTTGGGTATATTCAACTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAATCCAGGATCAAGCCGTTTCGCAGTCCTTGGGTATATTCAACTG  950

seq1  GCTTAACTAACAAAGGATCAGGGTCAAACCGCCTATGATAGCAAAGCCCA  1000
      |||||||||||||| ||||| ||||||||||| ||||||||| |||||||
seq2  GCTTAACTAACAAA-GATCA-GGTCAAACCGCTTATGATAGC-AAGCCCA  997

seq1  AGGCTACTTCGTAGATACTGAGAAGAGATGGTGGTTTTATTCTGAAATTT  1050
      |||||||||||||||||||||| ||||||||||||||||||||| |||| 
seq2  AGGCTACTTCGTAGATACTGAG-AGAGATGGTGGTTTTATTCTG-AATTG  1045

seq1  GACACAAAAGAT--CCCCCTGTCACCTGGGCAAGCCCACATGCC-TGTCT  1097
      |||   ||||||  |||| |||||||| |||| ||||||||||| |||||
seq2  GACCACAAAGATTCCCCCTTGTCACCT-GGCAGGCCCACATGCCTTGTCT  1094

seq1  GTGTCTA-TTCAGT-CCACA-TTAGCAGAGTTTTACTCCATGTGAAG-CA  1143
      ||||||| |||||| ||||| |||||||||  |||||| |||  | | ||
seq2  GTGTCTATTTCAGTCCCACATTTAGCAGAG--TTACTCAATGGTAGGCCA  1142

seq1  TCTATTGGCAGGCCAGAGGCCAGCATCTCCTCCTGGGAGCTCACA-GCTG  1192
      ||||| | ||||| |   | |||||||||   || ||||||| || ||||
seq2  TCTATGGCCAGGCTA---GGCAGCATCTCTCTCTAGGAGCTCTCACGCTG  1189

seq1  AA--CAGG-ATGGGGGAA  1207
      ||  |||| |||||||||
seq2  AAACCAGGAATGGGGGAA  1207

seq1: chr13_57841837_57842958
seq2: B6Ng01-267F19.g_66_1203 (reverse)

seq1  CAGAGCTGGGTGCTA-TTCTAGCGTAGAGCTGAATTGTCTCAGCTAAAAA  49
      ||||||| ||||||| ||| |||||||||||||||  |||||||| ||||
seq2  CAGAGCT-GGTGCTATTTCAAGCGTAGAGCTGAATGTTCTCAGCT-AAAA  48

seq1  TCCACCT-CCTTCCACT-CAGAAGCC-TTCCAAG-AGCCAGCCTGC-ACA  94
      ||||||| ||||||||| |||||||| ||||||| ||||||||||| |||
seq2  TCCACCTCCCTTCCACTCCAGAAGCCTTTCCAAGAAGCCAGCCTGCAACA  98

seq1  GAA--CCAAAGCTGAG---CCTCTATA--CTCTGAAATTCATATT-CCAC  136
      |||  |||||||||||   | ||||||  |||||||||||||||| ||||
seq2  GAAACCCAAAGCTGAGGCCCTTCTATAACCTCTGAAATTCATATTCCCAC  148

seq1  TGGACTGTAGCTCCTGCC-TCCTCTTATC-TCACATCCC-AGGAGGCTTT  183
      |||||||||||||||||| |||||||||| ||||||||| ||||||||||
seq2  TGGACTGTAGCTCCTGCCTTCCTCTTATCTTCACATCCCAAGGAGGCTTT  198

seq1  GAGCT-CCAGGGACCTAACTCTATCTCTGCAGCAGGGGTGTCGAGGTGTA  232
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCCAGGGACCTAACTCTATCTCTGCAGCAGGGGTGTCGAGGTGTA  248

seq1  TAGAGGATGAGTTTACTAAGTAAACAGACTACTAAGTAAACAGGCCTTCT  282
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGATGAGTTTACTAAGTAAACAGACTACTAAGTAAACAGGCCTTCT  298

seq1  TCCTAATGCCTCTCCACTCTCTCTCTCTCCACTCTGCTTTATTGAGGATA  332
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAATGCCTCTCCACTCTCTCTCTCTCCACTCTGCTTTATTGAGGATA  348

seq1  GAAGGGACCTGCCCGCCAAAGCAAAGAACAGCCGGGCTTCTGCTCATCTG  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGACCTGCCCGCCAAAGCAAAGAACAGCCGGGCTTCTGCTCATCTG  398

seq1  TGTCCTGGCGGCTGGAGACTCTCATTTGTGAGGTCACGTCTGTTTTCCCT  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGGCGGCTGGAGACTCTCATTTGTGAGGTCACGTCTGTTTTCCCT  448

seq1  AGATGGCAAGCTCCTCTATATTAGGCACAGGGTCTGTCTCTCCACACAAA  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCAAGCTCCTCTATATTAGGCACAGGGTCTGTCTCTCCACACAAA  498

seq1  CACACTCCATGCAGGCCGCCATGAAGATTTACTGAAATTATCCAGGCCAC  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCCATGCAGGCCGCCATGAAGATTTACTGAAATTATCCAGGCCAC  548

seq1  TTAGTGGCCTCGGTTTGCGGCTCAGACTTCCTTATACGTATGAATCTTCC  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGGCCTCGGTTTGCGGCTCAGACTTCCTTATACGTATGAATCTTCC  598

seq1  CAAGATGGCTGCTCTGCTGAAATGCAGATTGTTAACCAGCTGGTGGACAA  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATGGCTGCTCTGCTGAAATGCAGATTGTTAACCAGCTGGTGGACAA  648

seq1  AGAGGCTGAGAGTCAACATTTCTGATGGTCCCAGGGGCCCCAGACTTCTG  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTGAGAGTCAACATTTCTGATGGTCCCAGGGGCCCCAGACTTCTG  698

seq1  AGAAAGAGTAGACTGGCGGCTGGCTGTGGCCAATCTTCTGTTCTCAGGAA  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGTAGACTGGCGGCTGGCTGTGGCCAATCTTCTGTTCTCAGGAA  748

seq1  GGAACCTCCGCTCTTCATTCCTGGGTAACTAATGTTATCATTTCTTTCAG  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCTCCGCTCTTCATTCCTGGGTAACTAATGTTATCATTTCTTTCAG  798

seq1  CTACAACTGTCATAAAAGGCTAGATGGCATCTGACTGAGCAAATCCAGAG  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAACTGTCATAAAAGGCTAGATGGCATCTGACTGAGCAAATCCAGAG  848

seq1  CAGAGCTCCATCTCAAAGAGCCAAGGCTGAAGAACTTTCCGGATTAAACC  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTCCATCTCAAAGAGCCAAGGCTGAAGAACTTTCCGGATTAAACC  898

seq1  CTTTATTCTGCACTCCAGGCTAACTGCCAGGCTCACAGCGTACACGGCTC  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTCTGCACTCCAGGCTAACTGCCAGGCTCACAGCGTACACGGCTC  948

seq1  CTCACTAACAACCTGGTCCCGGCAGCTGAGGCCCACACAGAACGAAGCCT  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTAACAACCTGGTCCCGGCAGCTGAGGCCCACACAGAACGAAGCCT  998

seq1  GTACTTTAAATCCCTGGAATTTTAAGACCTTATTCTAAACTAAACTTTTC  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTTAAATCCCTGGAATTTTAAGACCTTATTCTAAACTAAACTTTTC  1048

seq1  CCCCTGCAGGTTTCATCTCTAGCTCCTCTGCTTTCTGAATATTTCATTTA  1082
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCAGGTTTCATCTCTAGCTCCTCTGCTTTCTGAATATTTCATTTA  1098

seq1  TGCCCAGGATAGAGTCTTAAATTGCAGGAAGCCAGAATTC  1122
      ||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGGATAGAGTCTTAAATTGCAGGAAGCCAGAATTC  1138