BAC Information

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BAC

Clone NameB6Ng01-267H02
Chromosome13 (Build37)
Map Location 79,078,704 - 79,133,576
singlet/doubletdoublet
Overlap geneEG666883
Upstream gene1110033M05Rik, 1700013G10Rik, Nr2f1, EG666856, LOC268676, LOC100042683, LOC622365, LOC100043052
Downstream geneLOC666925
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-267H02.bB6Ng01-267H02.g
ACCGA070560GA070561
length1,0531,094
definitionB6Ng01-267H02.b B6Ng01-267H02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,132,603 - 79,133,576)(79,078,704 - 79,079,802)
sequence
gaattctgtggtgctgcagttttctacataagtaattttatttaacaaca
tttaaataagaccttggtttggaaggtcttaaagttaggtttacaggctc
ctttgtgactgccaatttcctgaaaatgtcccagagaactccagctgcct
aaaagatgtgttcttcctcatttcttgaagcttttaatcttttttcctaa
aagttaaatcaaggcttaatttctcaaggtttttaaacacaaaatctaat
caaattacttttaattcattcaattatggacaaatattaaaaataaactg
tgtgttaaaatactatattagatttctgaactaaagagcctgacaaatac
agaggcagatgctggcaatcaaccactggactgagcaaggggtccccaat
gaaggaattggagaaaggactgaaggagctgaaagggtttgcaaccccat
aggaagaacaaaactatcaaccaatcagaaacctcagagttccgagggac
taaaccaccaaccaaagagtacacatggaaggacccaaggctccagctgt
gccacgatccgtcccccccccctcccaccttcccccaccccccgcgtcaa
tcccagggaatcaggggttctggcagataggcatagttagttgacagata
gacacagacaggagaatatgttggatctgaatgtaatttgtcaaatcgag
catcaaactttttagacagaagaaaaatagggaagttaggtgacacactg
acaacatacaaagaggttaccaaattcttacacaaaacaaaggattgcaa
acacggaaggactggcgggaaccaactggaataaaattcaaatgttaaca
actgggattaaaaaaaaaaaaaaaaaaaaaaaaacagctccacctaaggt
ccacttaaatcttagaagccaggggccaagggcttcctgccttgtcatag
ttcctattctagtctattgtataggtccaccttctgcctaaggccattgt
taaaataccttggtgtattggatgtactcagctatctatagctcctaagt
atc

gaattctgtgctgtatgtgattaattctaaaacaaatgagcatattaaat
agtttttataaacaaatacttaaagcttccatattttaatttttaaaaat
gttatatgaacatatgtgctagaaccatatggagaaatgtggctttgtct
gaagacatagaggaagtaatattacagttgggtataagaatttttcatca
ttttataaatctcatttttgtatccatgctccttcaacaactctgagtga
cttgccatgtacgcgattatcatgcacactccttcttccttcggcacttt
tgatgtgggaataaaacacagataatgtgatttaaattcactagaaatgt
gggcaactagttttattctgggtgaaatattgcgtgttttctatataaaa
atggtggcatcaggaggatgctgtccctggtggcatcaggcggcttccca
ttctaggcaggcatcagcccccaagaatccaaacccagatttggcagagc
acttctgaaattgtccagataatcaatattttaggttttgtggattctgt
atggcctctgttacatattcatctttattttgttttatatgctttaaaat
tttaaaaatcatgctcagttaaagagcacaataaagcataatgccacgag
acagagctggatagctgattgactatgttttgtgaactgttgtgaatgtg
gcttttaagaccacatttaatgtaacaaaactttggcttgtagggacaga
tgatcatacaaaagcatatttcaagcttgcattttccttttccttttatt
tcatgctatgattatcaaaggttatatggtctataagattcagtataggt
agtctaatttggtaaacaaaaattataactcttgagaattatgcaaaaca
accctatagctgctgtcatatattatcatatataatatttattagaaaat
aaattttaaggtttggtaccaggttggtggtacaacatcagactgtttca
cacatactttccattttgctagaatttaaagatctctgtaacatttctca
attccgatgggagacttatgaccgaatccatgagaatataatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_79132603_79133576
seq2: B6Ng01-267H02.b_117_1098 (reverse)

seq1  GATACTTA-GAACTATAGATAGCTGAGTTACATCC-ATACAC--AAGTAT  46
      |||||||| || ||||||||||||||| ||||||| ||||||  | ||||
seq2  GATACTTAGGAGCTATAGATAGCTGAG-TACATCCAATACACCAAGGTAT  49

seq1  TT--ACAATGG-CTTAGGCAGAAGGTGGA-CTATACAATAGACTAGAATA  92
      ||  ||||||| ||||||||||||||||| ||||||||||||||||||||
seq2  TTTAACAATGGCCTTAGGCAGAAGGTGGACCTATACAATAGACTAGAATA  99

seq1  GGAACTATGACAAGGGCAGGAAGCCCTT-GCCCCTGGCTTCTAAGA-TTA  140
      ||||||||||||| |||||||||||||| ||||||||||||||||| |||
seq2  GGAACTATGACAA-GGCAGGAAGCCCTTGGCCCCTGGCTTCTAAGATTTA  148

seq1  AGTGGACCTTAGGTGGAGCTGTTTTTTTTTTTTTTTTTTTTTTTTTTTAA  190
      |||||||||||||||||||||  |||||||||||||||||||||||||||
seq2  AGTGGACCTTAGGTGGAGCTG--TTTTTTTTTTTTTTTTTTTTTTTTTAA  196

seq1  TCCCAGTTGTTAACA-TTGAATTTTATTCCAGTTGGTTCCCGCCAGTCCT  239
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCCCAGTTGTTAACATTTGAATTTTATTCCAGTTGGTTCCCGCCAGTCCT  246

seq1  TCCGTGTTTGCAATCCTTTGTTTTGTGTAAGAATTTGGTAACCTCTTTGT  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTGTTTGCAATCCTTTGTTTTGTGTAAGAATTTGGTAACCTCTTTGT  296

seq1  ATGTTGTCAGTGTGTCACCTAACTTCCCTA-TTTTCTTCTGTCTAAAAAG  338
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATGTTGTCAGTGTGTCACCTAACTTCCCTATTTTTCTTCTGTCTAAAAAG  346

seq1  TTTGATGCTCGATTTGACAAATTACATTCAGATCCAACATATTCTCCTGT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGCTCGATTTGACAAATTACATTCAGATCCAACATATTCTCCTGT  396

seq1  CTGTGTCTATCTGTCAACTAACTATGCCTATCTGCCAGAACCCCTGATTC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCTATCTGTCAACTAACTATGCCTATCTGCCAGAACCCCTGATTC  446

seq1  CCTGGGATTGACGCGGGGGGTGGGGGAAGGTGGGAGGGGGGGGGGACGGA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGATTGACGCGGGGGGTGGGGGAAGGTGGGAGGGGGGGGGGACGGA  496

seq1  TCGTGGCACAGCTGGAGCCTTGGGTCCTTCCATGTGTACTCTTTGGTTGG  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGGCACAGCTGGAGCCTTGGGTCCTTCCATGTGTACTCTTTGGTTGG  546

seq1  TGGTTTAGTCCCTCGGAACTCTGAGGTTTCTGATTGGTTGATAGTTTTGT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTAGTCCCTCGGAACTCTGAGGTTTCTGATTGGTTGATAGTTTTGT  596

seq1  TCTTCCTATGGGGTTGCAAACCCTTTCAGCTCCTTCAGTCCTTTCTCCAA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTATGGGGTTGCAAACCCTTTCAGCTCCTTCAGTCCTTTCTCCAA  646

seq1  TTCCTTCATTGGGGACCCCTTGCTCAGTCCAGTGGTTGATTGCCAGCATC  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCATTGGGGACCCCTTGCTCAGTCCAGTGGTTGATTGCCAGCATC  696

seq1  TGCCTCTGTATTTGTCAGGCTCTTTAGTTCAGAAATCTAATATAGTATTT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGTATTTGTCAGGCTCTTTAGTTCAGAAATCTAATATAGTATTT  746

seq1  TAACACACAGTTTATTTTTAATATTTGTCCATAATTGAATGAATTAAAAG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACACAGTTTATTTTTAATATTTGTCCATAATTGAATGAATTAAAAG  796

seq1  TAATTTGATTAGATTTTGTGTTTAAAAACCTTGAGAAATTAAGCCTTGAT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGATTAGATTTTGTGTTTAAAAACCTTGAGAAATTAAGCCTTGAT  846

seq1  TTAACTTTTAGGAAAAAAGATTAAAAGCTTCAAGAAATGAGGAAGAACAC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTTTAGGAAAAAAGATTAAAAGCTTCAAGAAATGAGGAAGAACAC  896

seq1  ATCTTTTAGGCAGCTGGAGTTCTCTGGGACATTTTCAGGAAATTGGCAGT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTAGGCAGCTGGAGTTCTCTGGGACATTTTCAGGAAATTGGCAGT  946

seq1  CACAAAGGAGCCTGTAAACCTAACTTTAAGACCTTC  974
      ||||||||||||||||||||||||||||||||||||
seq2  CACAAAGGAGCCTGTAAACCTAACTTTAAGACCTTC  982


seq1: chr13_79078704_79079802
seq2: B6Ng01-267H02.g_67_1160

seq1  GAATTCTGTGCTGTATGTGATTAATTCTAAAACAAATGAGCATATTAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGCTGTATGTGATTAATTCTAAAACAAATGAGCATATTAAAT  50

seq1  AGTTTTTATAAACAAATACTTAAAGCTTCCATATTTTAATTTTTAAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTATAAACAAATACTTAAAGCTTCCATATTTTAATTTTTAAAAAT  100

seq1  GTTATATGAACATATGTGCTAGAACCATATGGAGAAATGTGGCTTTGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATATGAACATATGTGCTAGAACCATATGGAGAAATGTGGCTTTGTCT  150

seq1  GAAGACATAGAGGAAGTAATATTACAGTTGGGTATAAGAATTTTTCATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACATAGAGGAAGTAATATTACAGTTGGGTATAAGAATTTTTCATCA  200

seq1  TTTTATAAATCTCATTTTTGTATCCATGCTCCTTCAACAACTCTGAGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAAATCTCATTTTTGTATCCATGCTCCTTCAACAACTCTGAGTGA  250

seq1  CTTGCCATGTACGCGATTATCATGCACACTCCTTCTTCCTTCGGCACTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCATGTACGCGATTATCATGCACACTCCTTCTTCCTTCGGCACTTT  300

seq1  TGATGTGGGAATAAAACACAGATAATGTGATTTAAATTCACTAGAAATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTGGGAATAAAACACAGATAATGTGATTTAAATTCACTAGAAATGT  350

seq1  GGGCAACTAGTTTTATTCTGGGTGAAATATTGCGTGTTTTCTATATAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAACTAGTTTTATTCTGGGTGAAATATTGCGTGTTTTCTATATAAAA  400

seq1  ATGGTGGCATCAGGAGGATGCTGTCCCTGGTGGCATCAGGCGGCTTCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGCATCAGGAGGATGCTGTCCCTGGTGGCATCAGGCGGCTTCCCA  450

seq1  TTCTAGGCAGGCATCAGCCCCCAAGAATCCAAACCCAGATTTGGCAGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGCAGGCATCAGCCCCCAAGAATCCAAACCCAGATTTGGCAGAGC  500

seq1  ACTTCTGAAATTGTCCAGATAATCAATATTTTAGGTTTTGTGGATTCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGAAATTGTCCAGATAATCAATATTTTAGGTTTTGTGGATTCTGT  550

seq1  ATGGCCTCTGTTACATATTCATCTTTATTTTGTTTTATATGCTTTAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCTCTGTTACATATTCATCTTTATTTTGTTTTATATGCTTTAAAAT  600

seq1  TTTAAAAATCATGCTCAGTTAAAGAGCACAATAAAGCATAATGCCACGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAATCATGCTCAGTTAAAGAGCACAATAAAGCATAATGCCACGAG  650

seq1  ACAGAGCTGGATAGCTGATTGACTATGTTTTGTGAACTGTTGTGAATGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCTGGATAGCTGATTGACTATGTTTTGTGAACTGTTGTGAATGTG  700

seq1  GCTTTTAAGACCACATTTAATGTAACAAAACTTTGGCTTGTAGGGACAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTAAGACCACATTTAATGTAACAAAACTTTGGCTTGTAGGGACAGA  750

seq1  TGATCATACAAAAGCATATTTCAAGCTTGCATTTTCCTTTTCCTTTTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCATACAAAAGCATATTTCAAGCTTGCATTTTCCTTTTCCTTTTATT  800

seq1  TCATGCTATGATTATCAAAGGTTATATGGTCTATAAGATTCAGTATAGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCTATGATTATCAAAGGTTATATGGTCTATAAGATTCAGTATAGGT  850

seq1  AGTCTAA-TTGGTAAACAAAAATTATAACTCTTGAGAATTATGCAAAACA  899
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAATTTGGTAAACAAAAATTATAACTCTTGAGAATTATGCAAAACA  900

seq1  ACCCTATAGCTGCTGTCATATATTATCATATATAATATTTATTAGAAAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTATAGCTGCTGTCATATATTATCATATATAATATTTATTAGAAAAT  950

seq1  AAATTTTAA-GTTTGGTACCAGGTTGGTGGTACAACATCAGAACTGTTTT  998
      ||||||||| ||||||||||||||||||||||||||||||| |||| |||
seq2  AAATTTTAAGGTTTGGTACCAGGTTGGTGGTACAACATCAG-ACTG-TTT  998

seq1  CACAACCATTACTTTCCCATTTTGCTAGAA-TTAAAGATCCTCTGTAACA  1047
      ||||  || |||||| |||||||||||||| |||||||| ||||||||||
seq2  CACA--CA-TACTTT-CCATTTTGCTAGAATTTAAAGAT-CTCTGTAACA  1043

seq1  TTTCTCCAATTCCAATGGGAGACTTATGACAGAATACAATGAG-ATATAA  1096
      ||||| ||||||| |||||||||||||||| |||| | ||||| ||||||
seq2  TTTCT-CAATTCCGATGGGAGACTTATGACCGAAT-CCATGAGAATATAA  1091

seq1  TAC  1099
      |||
seq2  TAC  1094


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