BAC Information

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BAC

Clone NameB6Ng01-268C13
Chromosome13 (Build37)
Map Location 117,412,688 - 117,413,806
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041045, EG623174, Isl1, EG668276, Gm280
Downstream geneLOC100041169, Parp8, LOC668288, LOC623312, Emb, EG623365, LOC382807, Hcn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-268C13.bB6Ng01-268C13.g
ACCGA071092GA071093
length1,1281,057
definitionB6Ng01-268C13.b B6Ng01-268C13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctccgttgatatagggttttgttaaaaaaaaaaatactgtaaa
tctccactacagtatttacattttcccccatagtcatgactttctagcat
gcctacacattagcaatcatttttaatttagcaatttcaatttctttctt
tagtgtctggctgctgttgctgtgtctgaaactgagccatacatctctac
tgccaagaacaaatgggctttgggaagacttgggttggcctctgacgttg
tttacttgcttttggtttttgagacagggtctcactaggttatccccgct
gcccatattggcgtgacacttatgaccttcctgtttcagcctcgtacaca
gctgagactgcaggctcatgccatcatatctagccagctgcagtcaattt
tggatagacaactttccgatctggattcagacccattatcattggtcctc
agatcctcaagggaaagagtgaagctcaggctgaccttaaggtgtgatgt
taatgccttcatttctttaacatatcctaccagtgtgtacccccacaatc
acccaatttattttttttaaaaatcaagttttgaatgagataaataatca
tattgttaactttattatatactgctaacctgattggtcatgtactaatc
taccaccataaaagttttttttttgtttgtttgtttgtttaaagaatgta
gacctaggagtgtaattcagagactacattaaaactgagttttataaata
tgtcctgttgagtaagtactgagttctcaaagactcttgggttacacagc
atggactgactccagtgcagctcgtcattgtccagccatatccaccatgg
cattatcaagattaccgcagcataaagaccagggaaatgcagttatccag
tgagacttcccccttttaaatccacatttagctgatacagcaccttcagc
ataattccctgtgataaatccagaattcagtcttccatgttttgttcagt
tattttaaatttaataatacataacatcacacaggaaatttaggacaaac
ttctgctgtgaattcttagattttttatgtggccatataaacacagacct
ggatctcataaatcagacccttgtgtgt
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaattttcctaaacacatgaaactcaa
gaaaaatgaagactgaagtgtggacactatgccccctcctttagaagtgg
gaacaaaacacccatggaaggagtttacagaaacaaagtttggagctgag
atgaaagtgatggaccatgtagagactgccatatccaggggatccacccc
ataattcagcaatccaacgctgacaccattgcatatactagcaagatttt
atcgaaaggacccagatgtagcttgtctctttgtgaaactatgccggtgc
ctaacaaacacagaagtggatgctcacagtcggcttattggatggatcat
agggttcccaatggaggagctagagaatagttatcatggagtctaaaagg
atctttcaaccctataggtggaacaaccttaatgaaacttatccagtacc
ccccgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_117412688_117413806
seq2: B6Ng01-268C13.b_50_1177 (reverse)

seq1  ACACACACCAAAGACTGATTTATGAGA-CCAGGT-TCTGTTT-TATG--C  45
        |||||| |  | ||||||||||||| |||||| | ||||| ||||  |
seq2  --ACACACAAGGGTCTGATTTATGAGATCCAGGTCTGTGTTTATATGGCC  48

seq1  ACAT-AAAAATCTAAGAAATCACAGCAGAAG-TTGTCTTAATTTTCCTGT  93
      |||| ||||||||||||| |||||||||||| ||||| ||| ||||||||
seq2  ACATAAAAAATCTAAGAATTCACAGCAGAAGTTTGTCCTAAATTTCCTGT  98

seq1  -TGATGTTGTGTATTATTTATTTTAAAAT-ACTGAACAAAACATGGAAGA  141
       ||||||| ||||||||| | |||||||| ||||||||||||||||||||
seq2  GTGATGTTATGTATTATTAAATTTAAAATAACTGAACAAAACATGGAAGA  148

seq1  CTGAATTCTGGATTTATCACAGGGAA-TATGCTGAAGGTGCTGTATCAGC  190
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTGAATTCTGGATTTATCACAGGGAATTATGCTGAAGGTGCTGTATCAGC  198

seq1  TAAATGTGGATTTAAAAGGGGGAAGTCTCACTGGATAACTGCATTTCCCT  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTGGATTTAAAAGGGGGAAGTCTCACTGGATAACTGCATTTCCCT  248

seq1  GGTCTTTATGCTGCGGTTATCTTGATAATGCCATGGTGGATATGGCTGGA  290
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GGTCTTTATGCTGCGGTAATCTTGATAATGCCATGGTGGATATGGCTGGA  298

seq1  CAATGACGAGCTGCACTGGAGTCAGTCCATGCTGTGTAACCCAAGAGTCT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGACGAGCTGCACTGGAGTCAGTCCATGCTGTGTAACCCAAGAGTCT  348

seq1  TTGAGAACTCAGTACTTACTCAACAGGACATATTTATAAAACTCAGTTTT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAACTCAGTACTTACTCAACAGGACATATTTATAAAACTCAGTTTT  398

seq1  AATGTAGTCTCTGAATTACACTCCTAGGTCTACATTCTTTAAACAAACAA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGTCTCTGAATTACACTCCTAGGTCTACATTCTTTAAACAAACAA  448

seq1  ACAAACAAAAAAAAAAC-TTTATGGTGGTAGATTAGTACATGACCAATCA  489
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACAAACAAAAAAAAAACTTTTATGGTGGTAGATTAGTACATGACCAATCA  498

seq1  GGTTAGCAGTATATAATAAAGTTAACAATATGATTATTTATCTCATTCAA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGCAGTATATAATAAAGTTAACAATATGATTATTTATCTCATTCAA  548

seq1  AACTTGATTTTTAAAAAAAATAAATTGGGTGATTGTGGGGGTACACACTG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGATTTTTAAAAAAAATAAATTGGGTGATTGTGGGGGTACACACTG  598

seq1  GTAGGATATGTTAAAGAAATGAAGGCATTAACATCACACCTTAAGGTCAG  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGATATGTTAAAGAAATGAAGGCATTAACATCACACCTTAAGGTCAG  648

seq1  CCTGAGCTTCACTCTTTCCCTTGAGGATCTGAGGACCAATGATAATGGGT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGCTTCACTCTTTCCCTTGAGGATCTGAGGACCAATGATAATGGGT  698

seq1  CTGAATCCAGATCGGAAAGTTGTCTATCCAAAATTGACTGCAGCTGGCTA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATCCAGATCGGAAAGTTGTCTATCCAAAATTGACTGCAGCTGGCTA  748

seq1  GATATGATGGCATGAGCCTGCAGTCTCAGCTGTGTACGAGGCTGAAACAG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGATGGCATGAGCCTGCAGTCTCAGCTGTGTACGAGGCTGAAACAG  798

seq1  GAAGGTCATAAGTGTCACGCCAATATGGGCAGCGGGGATAACCTAGTGAG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTCATAAGTGTCACGCCAATATGGGCAGCGGGGATAACCTAGTGAG  848

seq1  ACCCTGTCTCAAAAACCAAAAGCAAGTAAACAACGTCAGAGGCCAACCCA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTCTCAAAAACCAAAAGCAAGTAAACAACGTCAGAGGCCAACCCA  898

seq1  AGTCTTCCCAAAGCCCATTTGTTCTTGGCAGTAGAGATGTATGGCTCAGT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCCCAAAGCCCATTTGTTCTTGGCAGTAGAGATGTATGGCTCAGT  948

seq1  TTCAGACACAGCAACAGCAGCCAGACACTAAAGAAAGAAATTGAAATTGC  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACACAGCAACAGCAGCCAGACACTAAAGAAAGAAATTGAAATTGC  998

seq1  TAAATTAAAAATGATTGCTAATGTGTAGGCATGCTAGAAAGTCATGACTA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTAAAAATGATTGCTAATGTGTAGGCATGCTAGAAAGTCATGACTA  1048

seq1  TGGGGGAAAATGTAAATACTGTAGTGGAGATTTACAGTATTTTTTTTTTT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGAAAATGTAAATACTGTAGTGGAGATTTACAGTATTTTTTTTTTT  1098

seq1  AACAAAACCCTATATCAACGGAGAGAATTC  1119
      ||||||||||||||||||||||||||||||
seq2  AACAAAACCCTATATCAACGGAGAGAATTC  1128