BAC Information

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BAC

Clone NameB6Ng01-269I16
Chromosome13 (Build37)
Map Location 5,038,255 - 5,184,768
singlet/doubletdoublet
Overlap genenone
Upstream geneAkr1c14, Akr1c18, LOC100039262, Akr1c13, Akr1c19, Akr1c12, Akr1c6, Akr1c20, Akr1c21, Akr1e1, EG432721, EG432723
Downstream gene1700016G22Rik, Klf6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-269I16.bB6Ng01-269I16.g
ACCGA072109GA072110
length1,2031,146
definitionB6Ng01-269I16.b B6Ng01-269I16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,183,572 - 5,184,768)(5,038,255 - 5,039,415)
sequence
gaattcttctgacaaatggagattctccacagatacttaaaagttacact
cacgcaagaatttatcagggcctaggaaatgggggttgtggtattgcatt
attcatgagaagagcagaaccccctggtgctagctttcacaaggctcaaa
ggagtagcactaattgtgactagggtgtgaaatccttacctgtctttaag
ctgaccctaggcaggattgctttatctttattgtaaacatttacctggtt
cctgtaagtccttttgaagtcattcctttgtgtcaggtaacttcaatgta
ctttgcctgctgcgacttcctaccccctttattttctgtattatataaga
ctggtgttcactttgtgacaatacattcagattctacacaatttcgaatg
ttgatctgtctgtcattggctgactccttgcccatctgcacccagagacc
cgtcctacgcagacaagggacataagagggtgtgctgcaagaaaggtcat
gtatgtaagcaaggtcatatgttgatgcagaatatcattcagtgatgcat
attagtatagccatccagaaggtcccacttcacatggatttcactgtact
tctaccccaaaacaaggaagtgattagctagtttttctgtcatttcatgt
actcttaagcattctagttttccccataaagaaatctttctcataaataa
ttaatttctgtaagttaaattgttatctatccagaccacaataacctaac
ctgtacatcttaaccaatactagtaatgcagttataagtaattctgaagg
tttctcttccaagaagctctaatttcctttaagagccactaaagtgaaat
agcttcattttaacaaaattcaacttcacaatagcttccattcttcatta
ctgactaaaggtattatttaatcaatcagacctttttatgatggcttctg
caaaggatggagccaattaattagtaatatccacaaccttctctggctcc
agatatcacagcaggccagaaaaaagaactctacatctcctacaactcaa
gaacaacaattattctccgtgcgtttagttataaaaatttgggtaaatag
gattggaggtatcacatagtccgaagtttggtgatgagcatttttaattt
ttataattaagaaattttcttttgcaattccagaaccatggcctcctttc
ata

gaattctggggaaatatagattagccttacagttgagtaatattgcttca
aaagactatatttctttggtcttgtattgaatttattactttgtaaatat
taaaatatacatattgaagtggaacttaattagaataaaataaacaaaat
acacttgaaacatgtgtatgatatacctaaatggatataaatttgcttta
ctgttttattaataatattttcataccatttcataaagactctggttaat
ctcatgcctatcacctttttttcttacatatctctttatcgtattcacta
cttttcattgttttctttcccacagtttatttggggctttaagtttgaca
ctggatttgaaaggattcattagagccaggtttgctcacttatgagtaca
tggctgaacattgtgcctctttctctcccagaaagtgttaatcctcagta
agcagtaagcagtacggctctgtgatgtccttcccatctctcgctcactg
ttaacagaagccaacttgtctcagtccagtgctgataagcacagatcttg
tgactacaggactgccatgaccgtcatcctgaggaaatggcattttgtga
tttttgccatggatggtaggcttccattctgtttagcatctcatgttttt
ggatggaaatcttgggttgcaaagctgttaatgttgcttcctagctttat
ttccattcagcccatgacacattttaagtccttcagtaaacattcccata
atagtgcagacccacgaattattcatctctccatattcatatcagcaggg
tcctcatctgtatgtttaaaaacaactaaatagagcaagattttcagggc
atcctaaactaaagtgattttccacagatcacctaggtaaagtgcccagg
aaaagttggctaagaaccagtagagactaagtagtcaaattgattacaca
agcgttttcacctgtgttttcattgtttgcagcatcttagctatgggatg
gctggtgaactgattcttctttttctttctatacatagaggagatcagtc
attcaacttcatctcatggatttaataatgcttaaaatgtcatatcctag
gctagaagcggtgctctgtcagttagtacctgttggtaaaatatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_5183572_5184768
seq2: B6Ng01-269I16.b_42_1244 (reverse)

seq1  TATGAAAGGAGGC--AGTATCTGAAATGTAAATAAAGAAAATATC-TAAT  47
      |||||||||||||   |  |||| |||   |  ||||||||| || ||||
seq2  TATGAAAGGAGGCCATGGTTCTGGAATTGCA--AAAGAAAATTTCTTAAT  48

seq1  AATAAAAAATAAAAATACTTCATCA-CAAAC-TCTGACTATGTGATAC--  93
       ||||||| ||||||| | |||||| ||||| || |||||||||||||  
seq2  TATAAAAATTAAAAATGC-TCATCACCAAACTTCGGACTATGTGATACCT  97

seq1  TCAATTCTATTTTACCCAA--TTTTATAACTAAACGCACCGGAG-ATAAT  140
       |||| ||| |||||||||  ||||||||||||||||| ||||| |||||
seq2  CCAATCCTA-TTTACCCAAATTTTTATAACTAAACGCA-CGGAGAATAAT  145

seq1  TG-TGTTCTTGAGTTGTAGGAGATGTTAGAGTTC-TTTTTCTGGCCTGCT  188
      || |||||||||||||||||||||| |||||||| |||||||||||||||
seq2  TGTTGTTCTTGAGTTGTAGGAGATG-TAGAGTTCTTTTTTCTGGCCTGCT  194

seq1  GTGATATCTGGAGCCAGAGAAGGTTGTGGATATTACTAATTAATTGGCTC  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATATCTGGAGCCAGAGAAGGTTGTGGATATTACTAATTAATTGGCTC  244

seq1  CATCCTTTGCAGAAGCCATCATAAAAAGGTCTGATTGATTAAATAATACC  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTTGCAGAAGCCATCATAAAAAGGTCTGATTGATTAAATAATACC  294

seq1  TTTAGTCAGTAATGAAGAATGGAAGCTATTGTGAAGTTGAATTTTGTTAA  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTCAGTAATGAAGAATGGAAGCTATTGTGAAGTTGAATTTTGTTAA  344

seq1  AATGAAGCTATTTCACTTTAGTGGCTCTTAAAGGAAATTAGAGCTTCTTG  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGCTATTTCACTTTAGTGGCTCTTAAAGGAAATTAGAGCTTCTTG  394

seq1  GAAGAGAAACCTTCAGAATTACTTATAACTGCATTACTAGTATTGGTTAA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAAACCTTCAGAATTACTTATAACTGCATTACTAGTATTGGTTAA  444

seq1  GATGTACAGGTTAGGTTATTGTGGTCTGGATAGATAACAATTTAACTTAC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTACAGGTTAGGTTATTGTGGTCTGGATAGATAACAATTTAACTTAC  494

seq1  AGAAATTAATTATTTATGAGAAAGATTTCTTTATGGGGAAAACTAGAATG  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTAATTATTTATGAGAAAGATTTCTTTATGGGGAAAACTAGAATG  544

seq1  CTTAAGAGTACATGAAATGACAGAAAAACTAGCTAATCACTTCCTTGTTT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGAGTACATGAAATGACAGAAAAACTAGCTAATCACTTCCTTGTTT  594

seq1  TGGGGTAGAAGTACAGTGAAATCCATGTGAAGTGGGACCTTCTGGATGGC  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTAGAAGTACAGTGAAATCCATGTGAAGTGGGACCTTCTGGATGGC  644

seq1  TATACTAATATGCATCACTGAATGATATTCTGCATCAACATATGACCTTG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTAATATGCATCACTGAATGATATTCTGCATCAACATATGACCTTG  694

seq1  CTTACATACATGACCTTTCTTGCAGCACACCCTCTTATGTCCCTTGTCTG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACATACATGACCTTTCTTGCAGCACACCCTCTTATGTCCCTTGTCTG  744

seq1  CGTAGGACGGGTCTCTGGGTGCAGATGGGCAAGGAGTCAGCCAATGACAG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGGACGGGTCTCTGGGTGCAGATGGGCAAGGAGTCAGCCAATGACAG  794

seq1  ACAGATCAACATTCGAAATTGTGTAGAATCTGAATGTATTGTCACAAAGT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATCAACATTCGAAATTGTGTAGAATCTGAATGTATTGTCACAAAGT  844

seq1  GAACACCAGTCTTATATAATACAGAAAATAAAGGGGGTAGGAAGTCGCAG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACCAGTCTTATATAATACAGAAAATAAAGGGGGTAGGAAGTCGCAG  894

seq1  CAGGCAAAGTACATTGAAGTTACCTGACACAAAGGAATGACTTCAAAAGG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAAAGTACATTGAAGTTACCTGACACAAAGGAATGACTTCAAAAGG  944

seq1  ACTTACAGGAACCAGGTAAATGTTTACAATAAAGATAAAGCAATCCTGCC  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACAGGAACCAGGTAAATGTTTACAATAAAGATAAAGCAATCCTGCC  994

seq1  TAGGGTCAGCTTAAAGACAGGTAAGGATTTCACACCCTAGTCACAATTAG  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTCAGCTTAAAGACAGGTAAGGATTTCACACCCTAGTCACAATTAG  1044

seq1  TGCTACTCCTTTGAGCCTTGTGAAAGCTAGCACCAGGGGGTTCTGCTCTT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACTCCTTTGAGCCTTGTGAAAGCTAGCACCAGGGGGTTCTGCTCTT  1094

seq1  CTCATGAATAATGCAATACCACAACCCCCATTTCCTAGGCCCTGATAAAT  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGAATAATGCAATACCACAACCCCCATTTCCTAGGCCCTGATAAAT  1144

seq1  TCTTGCGTGAGTGTAACTTTTAAGTATCTGTGGAGAATCTCCATTTGTCA  1188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCGTGAGTGTAACTTTTAAGTATCTGTGGAGAATCTCCATTTGTCA  1194

seq1  GAAGAATTC  1197
      |||||||||
seq2  GAAGAATTC  1203


seq1: chr13_5038255_5039415
seq2: B6Ng01-269I16.g_63_1208

seq1  GAATTCTGGGGAAATATAGATTAGCCTTACAGTTGAGTAATATTGCTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGGAAATATAGATTAGCCTTACAGTTGAGTAATATTGCTTCA  50

seq1  AAAGACTATATTTCTTTGGTCTTGTATTGAATTTATTACTTTGTAAATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTATATTTCTTTGGTCTTGTATTGAATTTATTACTTTGTAAATAT  100

seq1  TAAAATATACATATTGAAGTGGAACTTAATTAGAATAAAATAAACAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATACATATTGAAGTGGAACTTAATTAGAATAAAATAAACAAAAT  150

seq1  ACACTTGAAACATGTGTATGATATACCTAAATGGATATAAATTTGCTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTGAAACATGTGTATGATATACCTAAATGGATATAAATTTGCTTTA  200

seq1  CTGTTTTATTAATAATATTTTCATACCATTTCATAAAGACTCTGGTTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTATTAATAATATTTTCATACCATTTCATAAAGACTCTGGTTAAT  250

seq1  CTCATGCCTATCACCTTTTTTTCTTACATATCTCTTTATCGTATTCACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGCCTATCACCTTTTTTTCTTACATATCTCTTTATCGTATTCACTA  300

seq1  CTTTTCATTGTTTTCTTTCCCACAGTTTATTTGGGGCTTTAAGTTTGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCATTGTTTTCTTTCCCACAGTTTATTTGGGGCTTTAAGTTTGACA  350

seq1  CTGGATTTGAAAGGATTCATTAGAGCCAGGTTTGCTCACTTATGAGTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATTTGAAAGGATTCATTAGAGCCAGGTTTGCTCACTTATGAGTACA  400

seq1  TGGCTGAACATTGTGCCTCTTTCTCTCCCAGAAAGTGTTAATCCTCAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGAACATTGTGCCTCTTTCTCTCCCAGAAAGTGTTAATCCTCAGTA  450

seq1  AGCAGTAAGCAGTACGGCTCTGTGATGTCCTTCCCATCTCTCGCTCACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTAAGCAGTACGGCTCTGTGATGTCCTTCCCATCTCTCGCTCACTG  500

seq1  TTAACAGAAGCCAACTTGTCTCAGTCCAGTGCTGATAAGCACAGATCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGAAGCCAACTTGTCTCAGTCCAGTGCTGATAAGCACAGATCTTG  550

seq1  TGACTACAGGACTGCCATGACCGTCATCCTGAGGAAATGGCATTTTGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTACAGGACTGCCATGACCGTCATCCTGAGGAAATGGCATTTTGTGA  600

seq1  TTTTTGCCATGGATGGTAGGCTTCCATTCTGTTTAGCATCTCATGTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCCATGGATGGTAGGCTTCCATTCTGTTTAGCATCTCATGTTTTT  650

seq1  GGATGGAAATCTTGGGTTGCAAAGCTGTTAATGTTGCTTCCTAGCTTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGAAATCTTGGGTTGCAAAGCTGTTAATGTTGCTTCCTAGCTTTAT  700

seq1  TTCCATTCAGCCCATGACACATTTTAAGTCCTTCAGTAAACATTCCCATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTCAGCCCATGACACATTTTAAGTCCTTCAGTAAACATTCCCATA  750

seq1  ATAGTGCAGACCCACGAATTATTCATCTCTCCATATTCATATCAGCAGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGCAGACCCACGAATTATTCATCTCTCCATATTCATATCAGCAGGG  800

seq1  TCCTCATCTGTATGTTTAAAAACAACTAAATAGAGCAAGATTTTCAGGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCATCTGTATGTTTAAAAACAACTAAATAGAGCAAGATTTTCAGGGC  850

seq1  ATCCTAAACTAAAGTGATTTTCCACAGATCACCTAGGTAAAGTGCCCAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAAACTAAAGTGATTTTCCACAGATCACCTAGGTAAAGTGCCCAGG  900

seq1  AAAAGTTGGCTAAGAACCAGTAGAGACTAAGTAGTCAAATTGATTACACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTGGCTAAGAACCAGTAGAGACTAAGTAGTCAAATTGATTACACA  950

seq1  AGCGTTTTCACCTGTGTTTTCATTGTTTGCAAGCATCTTAGCTAT-GGAT  999
      |||||||||||||||||||||||||||||| |||||||||||||| ||||
seq2  AGCGTTTTCACCTGTGTTTTCATTGTTTGC-AGCATCTTAGCTATGGGAT  999

seq1  GGCTGGTGAACTTGATTC-TCTTTTTCTTTCTTAATACAAAATAGAGAAG  1048
      ||||||||||| |||||| |||||||||||||  ||||   |||||| ||
seq2  GGCTGGTGAAC-TGATTCTTCTTTTTCTTTCT--ATAC---ATAGAGGAG  1043

seq1  ATCAAGGTTCATTCAACTTCATCCTTCATTGAATTTTAATAATGCTTAAA  1098
      ||||    |||||||||||||||  |||| ||  ||||||||||||| ||
seq2  ATCA---GTCATTCAACTTCATC--TCATGGA--TTTAATAATGCTT-AA  1085

seq1  AATGTCATATCCTAGGGCTAG-AGCAGTGGCTCTGTCAGTAAAGTACCTG  1147
      |||||||||||||| |||||| ||| || |||||||||||  ||||||||
seq2  AATGTCATATCCTA-GGCTAGAAGCGGT-GCTCTGTCAGT-TAGTACCTG  1132

seq1  TTGTGAAAATATGA  1161
      |||  |||||||||
seq2  TTGGTAAAATATGA  1146


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