BAC Information

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BAC

Clone NameB6Ng01-269J03
Chromosome13 (Build37)
Map Location 110,065,101 - 110,198,780
singlet/doubletdoublet
Overlap genePde4d, LOC100040968
Upstream geneElovl7, LOC668129, LOC100040524, Depdc1b, EG668144, LOC621663
Downstream geneLOC100040577, Rab3c, EG432803, 9830130M13Rik, Plk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-269J03.bB6Ng01-269J03.g
ACCGA072131GA072132
length6351,146
definitionB6Ng01-269J03.b B6Ng01-269J03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,198,146 - 110,198,780)(110,065,101 - 110,066,194)
sequence
gaattcagggagggtctgcggccaaggaggaccggaacaaggagtgagct
aaccctggggagtcatgttagtcacagaaccgagctgtgttgtgtgagca
atggttgaagagaggtaagcaaaaccaggagggctgtaacagttagggga
tagatgtactgtcttgtaacaggagttggtggcttagcttacagcagtac
ctgtgcttatgggcaatgatgggagatggttggggaactctacaagtgaa
attggtatgatgtaagcattggtttcaatgggagatgaatgtgagagatg
aattcaaaagaattaccatatttcttgttcatggaagtgtgaagaagtgt
gacatcattcattaagagggaaaaaaagggaggtagaatactgttgaaag
caatagcaaggtgctggagactgggaaacagccctagatgactgagtatg
gaaattctctctctctctccctctctctctctctctctctctctctctct
ttctctctctctctctcaatctctctctctcaatttctctctcaacctct
ctctctctctcaacctctctctcgcaatctctctctctctcaatctctct
cactctctctctctctctctctctctctgtgtgtg

gaattctctggccaatttaacagcgagaaagaattaagaatgattatgtt
tgaggcccaagtgataagtcatagctgacattcatggggcttagaagata
ctgggcgacacgtattagggaacgcgatccaagaagttagcgttacattt
ggagtgactactgggtttcaaagtacaagatagtcacttagatcattgtc
tctatgagtccaaagtgcatagcaaagattggcacaatagagccacgtct
ggaaatcattaaaatacagaggtttttgaacttgtgagacttgcagtatg
actgcaccgcgaatgtgtatgaatagagaaagaaagactggtgacagctg
gatacttcaaacattagaaatcagaagatcacagaaacgcagctgaagaa
gccatgagaaggtagcagaagccatgagaaggtagccagtgagtagaacc
aaaaccaagagatggtggcagaccaaaatgtttggtggagaaaagtgtga
tgttagatctgacgatacttatgagcggctaagatgaaggtcagtcactg
agcatgaaactgggccagtggcactagtgggggatcaaacggtgatgaca
caaggccggaggactgattgtttcacatcttctcacctctctttaaacct
cagctacgtatttcttttttcaagttgatgggcttactctttcagtacag
agaaggagcaactaaaacagaccattcagctatgcctgccactacatcca
ccaaactgaccatgcaaacttccagaaccttctactttgccattctgttc
attattatgagtggaaaaaaatcgttattctcttggatagtaacataaga
aatcactccagaactgaaacacttcccttactgttcagcccgaaacaatt
tgtgatctcataaatttatatggtagtttaatagtcaggcaacccagctt
gtcagaatacgggcaattatttttgtagtgacctgctgaggaaaggcttc
tctaggctatgacaatcagttcctaggaatggtgcctgtttacagcctac
cttgtttttcactagtaatgacagaaggacttggtgtcttttctttgtga
cttcttccaaagttggattgttctgatgttaggatcggacctgagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_110198146_110198780
seq2: B6Ng01-269J03.b_43_677 (reverse)

seq1  CACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTGAGAGA  50
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CACACACAGAGAGAGAGAGAGAGAGAGAGAGAGTGAGAGAGATTGAGAGA  50

seq1  GAGAGAGATTGAGAGAGAGAGGTTGAGAGAGAGAGAGAGGTTGAGAGAGA  100
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGATTGCGAGAGAGAGGTTGAGAGAGAGAGAGAGGTTGAGAGAGA  100

seq1  AATTGAGAGAGAGAGATTGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAGAGAGAGAGATTGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGA  150

seq1  GAGAGAGAGAGAGAGGGAGAGAGAGAGAGAATTTCCATACTCAGTCATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGGGAGAGAGAGAGAGAATTTCCATACTCAGTCATCT  200

seq1  AGGGCTGTTTCCCAGTCTCCAGCACCTTGCTATTGCTTTCAACAGTATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTGTTTCCCAGTCTCCAGCACCTTGCTATTGCTTTCAACAGTATTC  250

seq1  TACCTCCCTTTTTTTCCCTCTTAATGAATGATGTCACACTTCTTCACACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCCCTTTTTTTCCCTCTTAATGAATGATGTCACACTTCTTCACACT  300

seq1  TCCATGAACAAGAAATATGGTAATTCTTTTGAATTCATCTCTCACATTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGAACAAGAAATATGGTAATTCTTTTGAATTCATCTCTCACATTCA  350

seq1  TCTCCCATTGAAACCAATGCTTACATCATACCAATTTCACTTGTAGAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCATTGAAACCAATGCTTACATCATACCAATTTCACTTGTAGAGTT  400

seq1  CCCCAACCATCTCCCATCATTGCCCATAAGCACAGGTACTGCTGTAAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAACCATCTCCCATCATTGCCCATAAGCACAGGTACTGCTGTAAGCT  450

seq1  AAGCCACCAACTCCTGTTACAAGACAGTACATCTATCCCCTAACTGTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCACCAACTCCTGTTACAAGACAGTACATCTATCCCCTAACTGTTAC  500

seq1  AGCCCTCCTGGTTTTGCTTACCTCTCTTCAACCATTGCTCACACAACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTCCTGGTTTTGCTTACCTCTCTTCAACCATTGCTCACACAACACA  550

seq1  GCTCGGTTCTGTGACTAACATGACTCCCCAGGGTTAGCTCACTCCTTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGGTTCTGTGACTAACATGACTCCCCAGGGTTAGCTCACTCCTTGTT  600

seq1  CCGGTCCTCCTTGGCCGCAGACCCTCCCTGAATTC  635
      |||||||||||||||||||||||||||||||||||
seq2  CCGGTCCTCCTTGGCCGCAGACCCTCCCTGAATTC  635


seq1: chr13_110065101_110066194
seq2: B6Ng01-269J03.g_105_1208

seq1  ATTATGTTTGAGGCCCAAGTGATAAGTCATAGCTGACATTCATGGGGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTTTGAGGCCCAAGTGATAAGTCATAGCTGACATTCATGGGGCTT  50

seq1  AGAAGATACTGGGCGACACGTATTAGGGAACGCGATCCAAGAAGTTAGCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATACTGGGCGACACGTATTAGGGAACGCGATCCAAGAAGTTAGCG  100

seq1  TTACATTTGGAGTGACTACTGGGTTTCAAAGTACAAGATAGTCACTTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTTGGAGTGACTACTGGGTTTCAAAGTACAAGATAGTCACTTAGA  150

seq1  TCATTGTCTCTATGAGTCCAAAGTGCATAGCAAAGATTGGCACAATAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTCTCTATGAGTCCAAAGTGCATAGCAAAGATTGGCACAATAGAG  200

seq1  CCACGTCTGGAAATCATTAAAATACAGAGGTTTTTGAACTTGTGAGACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGTCTGGAAATCATTAAAATACAGAGGTTTTTGAACTTGTGAGACTT  250

seq1  GCAGTATGACTGCACCGCGAATGTGTATGAATAGAGAAAGAAAGACTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTATGACTGCACCGCGAATGTGTATGAATAGAGAAAGAAAGACTGGT  300

seq1  GACAGCTGGATACTTCAAACATTAGAAATCAGAAGATCACAGAAACGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTGGATACTTCAAACATTAGAAATCAGAAGATCACAGAAACGCAG  350

seq1  CTGAAGAAGCCATGAGAAGGTAGCAGAAGCCATGAGAAGGTAGCCAGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGAAGCCATGAGAAGGTAGCAGAAGCCATGAGAAGGTAGCCAGTGA  400

seq1  GTAGAACCAAAACCAAGAGATGGTGGCAGACCAAAATGTTTGGTGGAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAACCAAAACCAAGAGATGGTGGCAGACCAAAATGTTTGGTGGAGAA  450

seq1  AAGTGTGATGTTAGATCTGACGATACTTATGAGCGGCTAAGATGAAGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGATGTTAGATCTGACGATACTTATGAGCGGCTAAGATGAAGGTC  500

seq1  AGTCACTGAGCATGAAACTGGGCCAGTGGCACTAGTGGGGGATCAAACGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTGAGCATGAAACTGGGCCAGTGGCACTAGTGGGGGATCAAACGG  550

seq1  TGATGACACAAGGCCGGAGGACTGATTGTTTCACATCTTCTCACCTCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGACACAAGGCCGGAGGACTGATTGTTTCACATCTTCTCACCTCTCT  600

seq1  TTAAACCTCAGCTACGTATTTCTTTTTTCAAGTTGATGGGCTTACTCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACCTCAGCTACGTATTTCTTTTTTCAAGTTGATGGGCTTACTCTTT  650

seq1  CAGTACAGAGAAGGAGCAACTAAAACAGACCATTCAGCTATGCCTGCCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACAGAGAAGGAGCAACTAAAACAGACCATTCAGCTATGCCTGCCAC  700

seq1  TACATCCACCAAACTGACCATGCAAACTTCCAGAACCTTCTACTTTGCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCCACCAAACTGACCATGCAAACTTCCAGAACCTTCTACTTTGCCA  750

seq1  TTCTGTTCATTATTATGAGTGGAAAAAAATCGTTATTCTCTTGGATAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTCATTATTATGAGTGGAAAAAAATCGTTATTCTCTTGGATAGTA  800

seq1  ACATAAGAAATCACTCCAGAACTGAAACACTT-CCTTACTGTTCAGCCCG  849
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACATAAGAAATCACTCCAGAACTGAAACACTTCCCTTACTGTTCAGCCCG  850

seq1  AAACAATTTGTGATCTCATAAA-TTATATGGTAG-TTAATAGTCAGGCAA  897
      |||||||||||||||||||||| ||||||||||| |||||||||||||||
seq2  AAACAATTTGTGATCTCATAAATTTATATGGTAGTTTAATAGTCAGGCAA  900

seq1  -CCAGCTTGTCAG-ATAACGGCAAT--ATTTTGTAGTGACCTGCTGAGG-  942
       |||||||||||| |||  ||||||   ||||||||||||||||||||| 
seq2  CCCAGCTTGTCAGAATACGGGCAATTATTTTTGTAGTGACCTGCTGAGGA  950

seq1  AAGGCTTCTCTAGGCTATGAC-ATCAGTTCCTAGG-ATGGTG-CTGTTTA  989
      ||||||||||||||||||||| ||||||||||||| |||||| |||||||
seq2  AAGGCTTCTCTAGGCTATGACAATCAGTTCCTAGGAATGGTGCCTGTTTA  1000

seq1  CAGGCTACCTTGTTTTTCACTAGTTATTGACAGAAGACTTTGGTGTC-TT  1038
      ||| ||||||||||||||||||| || |||||||||   |||||||| ||
seq2  CAGCCTACCTTGTTTTTCACTAG-TAATGACAGAAGGACTTGGTGTCTTT  1049

seq1  TCTTTGTGGACTTCTTCAAAAGGTTGAGTGTCTTGATGTTAGGGATCGGA  1088
      ||||||| ||||||||| |||| | || |||  |||||||| ||||||||
seq2  TCTTTGT-GACTTCTTCCAAAGTTGGATTGTTCTGATGTTA-GGATCGGA  1097

seq1  -CTGAGG  1094
       ||||||
seq2  CCTGAGG  1104


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