BAC Information

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BAC

Clone NameB6Ng01-269O08
Chromosome13 (Build37)
Map Location 83,340,212 - 83,455,974
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC238756, LOC667018
Downstream geneMef2c, LOC100043111, LOC623241, LOC432789, 2810049E08Rik, LOC100043119, LOC667081, LOC667101, Tmem161b, LOC666795
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-269O08.bB6Ng01-269O08.g
ACCGA072375GA072376
length1,1791,113
definitionB6Ng01-269O08.b B6Ng01-269O08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,340,212 - 83,341,387)(83,454,851 - 83,455,974)
sequence
gaattctttctctataaactctgagtatttctcttatgttcgggcttcca
tacatcgcctttgcggacactatgccataacttgaaagagaggtcagtta
tgaacataaacatgtgctgattctgaacaaatggtaaaatattagtaagt
acaggatcagtgagtatgtctttccagtaaaagaatgcatgaatacaaac
aataaaatctcatatattttaagagattcatgtgtgtatttatatatttt
tattttagagtgtgatacatatttataaattcatattttaatgcacacaa
gactattttcaaaagcattggatagataaaatgaagtaagactgggaaga
acattgcttatcccaaagacttagaagatcacctgtgagttaaaatagca
aggtcggggacaagcctaaggtccaaaggtattgtctacttatcagctta
ccccaatatttctatacagcaatggtaattgttttcatcgtgaaagtatt
ttcaatttattggcaaatccaaatgtgttttgtctaaaaactatatgatt
cacattaagacttctgtgagccagactttttgataagaatgcaatcttta
ggattttcaggatcaatagaacaaaggtaaattcccatacctcagtgggt
ctgacatggctgaacactgtcatttcgactgctctggatgtcaaacacag
tcagacccacaggtgatcagcttgttcttgagacaataaagcaagtgtca
ggatttgtaatttccaaatattcatttttgactcactcttgattgttgct
aaggaggttccttggaagagagactttaagttactttatgagacccacgt
tgaacaaaactaaaggccactctaaaggcatatgttttggcttatccagc
accacagaaatttgagccccaggaagaaattgctttgccttgcatcatgt
tcaaactgattttagattcctggagccagaatgtatcccattctaaattg
tagctactttttccactcctcatcctctgttaataaagtatcatttcaaa
atgtagaactgtattatgtcaaggagtcactgtaaatgaacaacgtacca
actgaattctttcataaatcatcatatcaagtctgaagccaaggcgaatg
gatttttttttcatctgaatgtgtgttgg

gaattcattgtctgaagaggagacaaggggtttgagtagaaatgggaagg
tttgggtataagtcttccttgtctacctaaaggaatgggaaaaaaaaacc
tacttacccatcaactggttaatagataatgaaaatctgatccacccaca
aaatggagtattattttacccaaaagaaaaattaaacttgcatgaaaata
gatggacctgggatgtacaatattaagcaaggtcactaaaactcggcaag
aaaacaaccctgcatcttcttcctcatatgtggtctataatgtacacaga
tataaatgcaggaacagtacaatactgtacaggagcgtgagaaagggcag
tgttaggtgatgagaagagactgagtatagacagaagaacctgtcagtta
tgaaaagcgattagaaagctgattgtttatctagtttcacctccatcatt
acccacccccagaggtgaataagtgaataaaaatgtacttgatagtttag
aagtgaaaatccaaagaccaatgtctttagatagactgttgtcatggtac
agaagttcattgagatgtatacattttaggactgaaaaagtttatgtttg
ggaggtcatcttaatctgggtgcatgttgttttatttatgagttcattac
aataaagtcaatacagaaacccataactggatattgtgcagagagtgaga
gacttttggaacactcagtcccaaatggtatgatttcatcaaatttcctg
ccttagggctcaggaaaggtgcagaaaaacaatcagaaagatagtaagag
ccacagtggatagatggcatcatggaaagagtgtcttctagatatagcag
ggctgacacaaagatgaactcacagagaccgcagcagtatgcacagaacg
ggcactagcccatggtagatggaattctaaattctatcactgagagatgt
cgacttttgtgcctaaccaagactctattctcaatgacatttgcttacaa
aggaaaatgatgtttttttctacagagattcctgaatatattaacaacat
cagatgccagcatgatgcaatacaaaatgaactcaagtattttcttgtag
ttttatttgtctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_83340212_83341387
seq2: B6Ng01-269O08.b_46_1224

seq1  GAATTCTTTCTCTATAAACTCTGAGTATTTCTCTTATGTTCGGGCTTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTCTATAAACTCTGAGTATTTCTCTTATGTTCGGGCTTCCA  50

seq1  TACATCGCCTTTGCGGACACTATGCCATAACTTGAAAGAGAGGTCAGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCGCCTTTGCGGACACTATGCCATAACTTGAAAGAGAGGTCAGTTA  100

seq1  TGAACATAAACATGTGCTGATTCTGAACAAATGGTAAAATATTAGTAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATAAACATGTGCTGATTCTGAACAAATGGTAAAATATTAGTAAGT  150

seq1  ACAGGATCAGTGAGTATGTCTTTCCAGTAAAAGAATGCATGAATACAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATCAGTGAGTATGTCTTTCCAGTAAAAGAATGCATGAATACAAAC  200

seq1  AATAAAATCTCATATATTTTAAGAGATTCATGTGTGTATTTATATATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATCTCATATATTTTAAGAGATTCATGTGTGTATTTATATATTTT  250

seq1  TATTTTAGAGTGTGATACATATTTATAAATTCATATTTTAATGCACACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAGAGTGTGATACATATTTATAAATTCATATTTTAATGCACACAA  300

seq1  GACTATTTTCAAAAGCATTGGATAGATAAAATGAAGTAAGACTGGGAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATTTTCAAAAGCATTGGATAGATAAAATGAAGTAAGACTGGGAAGA  350

seq1  ACATTGCTTATCCCAAAGACTTAGAAGATCACCTGTGAGTTAAAATAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGCTTATCCCAAAGACTTAGAAGATCACCTGTGAGTTAAAATAGCA  400

seq1  AGGTCGGGGACAAGCCTAAGGTCCAAAGGTATTGTCTACTTATCAGCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCGGGGACAAGCCTAAGGTCCAAAGGTATTGTCTACTTATCAGCTTA  450

seq1  CCCCAATATTTCTATACAGCAATGGTAATTGTTTTCATCGTGAAAGTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAATATTTCTATACAGCAATGGTAATTGTTTTCATCGTGAAAGTATT  500

seq1  TTCAATTTATTGGCAAATCCAAATGTGTTTTGTCTAAAAACTATATGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTTATTGGCAAATCCAAATGTGTTTTGTCTAAAAACTATATGATT  550

seq1  CACATTAAGACTTCTGTGAGCCAGACTTTTTGATAAGAATGCAATCTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTAAGACTTCTGTGAGCCAGACTTTTTGATAAGAATGCAATCTTTA  600

seq1  GGATTTTCAGGATCAATAGAACAAAGGTAAATTCCCATACCTCAGTGGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTCAGGATCAATAGAACAAAGGTAAATTCCCATACCTCAGTGGGT  650

seq1  CTGACATGGCTGAACACTGTCATTTCGACTGCTCTGGATGTCAAACACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACATGGCTGAACACTGTCATTTCGACTGCTCTGGATGTCAAACACAG  700

seq1  TCAGACCCACAGGTGATCAGCTTGTTCTTGAGACAATAAAGCAAGTGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACCCACAGGTGATCAGCTTGTTCTTGAGACAATAAAGCAAGTGTCA  750

seq1  GGATTTGTAATTTCCAAATATTCATTTTTGACTCACTCTTGATTGTTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTGTAATTTCCAAATATTCATTTTTGACTCACTCTTGATTGTTGCT  800

seq1  AAGGAGGTTCCTTGGAAGAGAGACTTTAAGTTACTTTATGAGACCCACGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGTTCCTTGGAAGAGAGACTTTAAGTTACTTTATGAGACCCACGT  850

seq1  TGAACAAAACT-AAGGCCACTCTAAAGGCATATGTTTTGGCTTATCCAGC  899
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGAACAAAACTAAAGGCCACTCTAAAGGCATATGTTTTGGCTTATCCAGC  900

seq1  ACCACAG-AATTTGAGCCCCAGGAAGAAATTGCTTTGCCTTGCATCATGT  948
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGAAATTTGAGCCCCAGGAAGAAATTGCTTTGCCTTGCATCATGT  950

seq1  TCAAACTGATTTTAGATTCCTGGAGCCAGAATGTATTCCATTCT-AATTG  997
      |||||||||||||||||||||||||||||||||||| ||||||| |||||
seq2  TCAAACTGATTTTAGATTCCTGGAGCCAGAATGTATCCCATTCTAAATTG  1000

seq1  TAGCTACTTTTTCCACT-CTCATCCTCTGTAATAAAAGTATCATTTCAAA  1046
      ||||||||||||||||| |||||||||||| |  ||||||||||||||||
seq2  TAGCTACTTTTTCCACTCCTCATCCTCTGTTAATAAAGTATCATTTCAAA  1050

seq1  ATGTTAAGAAACTGTA-TATGTCAA-GAGTCACTGTAAATGAAACAAACG  1094
      ||||  || ||||||| |||||||| |||||||||||||||||   ||||
seq2  ATGT--AG-AACTGTATTATGTCAAGGAGTCACTGTAAATGAA--CAACG  1095

seq1  TAACAACTGA--TCTTTCATAAATCATTCATATCAAAGTCTGAAG-CAAA  1141
      || |||||||  |||||||||||||| ||||||| |||||||||| ||| 
seq2  TACCAACTGAATTCTTTCATAAATCA-TCATATC-AAGTCTGAAGCCAAG  1143

seq1  GCG-ATAGATTTTTTTTTTTAATCTG-ATGTGT-TTGG  1176
      ||| || ||  ||||||||| ||||| |||||| ||||
seq2  GCGAATGGA--TTTTTTTTTCATCTGAATGTGTGTTGG  1179


seq1: chr13_83454851_83455974
seq2: B6Ng01-269O08.g_67_1179 (reverse)

seq1  GAGACAAATAAAAATTTACAGAAATACCTTTGAGTTCATTTTGTATTGGC  50
      ||||||||||||| |  |   ||||||  |||||||||||||||||||  
seq2  GAGACAAATAAAACTACAAGAAAATAC--TTGAGTTCATTTTGTATTG--  46

seq1  AATCCATTGCTGGGCATCCTTGATGTTGTTAATATATTCAGGGAATCTCT  100
       |||   |||| ||||||  |||||||||||||||||||| |||||||||
seq2  CATC--ATGCT-GGCATC--TGATGTTGTTAATATATTCA-GGAATCTCT  90

seq1  GTTAGAAAAAACATCATTTTTCCTTTGTAAGCAAATGTCATTGAGAATAG  150
      ||   ||||||||||| |||||||||||||||||||||||||||||||||
seq2  GTAGAAAAAAACATCA-TTTTCCTTTGTAAGCAAATGTCATTGAGAATAG  139

seq1  AGTCTTGGTTAGGCACAAAAGTCGACATCTCTCAGTGATAGAATTTAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTGGTTAGGCACAAAAGTCGACATCTCTCAGTGATAGAATTTAGAA  189

seq1  TTCCATCTACCATGGGCTAGTGCCCGTTCTGTGCATACTGCTGCGGTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATCTACCATGGGCTAGTGCCCGTTCTGTGCATACTGCTGCGGTCTC  239

seq1  TGTGAGTTCATCTTTGTGTCAGCCCTGCTATATCTAGAAGACACTCTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTTCATCTTTGTGTCAGCCCTGCTATATCTAGAAGACACTCTTTC  289

seq1  CATGATGCCATCTATCCACTGTGGCTCTTACTATCTTTCTGATTGTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGCCATCTATCCACTGTGGCTCTTACTATCTTTCTGATTGTTTTT  339

seq1  CTGCACCTTTCCTGAGCCCTAAGGCAGGAAATTTGATGAAATCATACCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACCTTTCCTGAGCCCTAAGGCAGGAAATTTGATGAAATCATACCAT  389

seq1  TTGGGACTGAGTGTTCCAAAAGTCTCTCACTCTCTGCACAATATCCAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGACTGAGTGTTCCAAAAGTCTCTCACTCTCTGCACAATATCCAGTT  439

seq1  ATGGGTTTCTGTATTGACTTTATTGTAATGAACTCATAAATAAAACAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTTTCTGTATTGACTTTATTGTAATGAACTCATAAATAAAACAACA  489

seq1  TGCACCCAGATTAAGATGACCTCCCAAACATAAACTTTTTCAGTCCTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCCAGATTAAGATGACCTCCCAAACATAAACTTTTTCAGTCCTAAA  539

seq1  ATGTATACATCTCAATGAACTTCTGTACCATGACAACAGTCTATCTAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATACATCTCAATGAACTTCTGTACCATGACAACAGTCTATCTAAAG  589

seq1  ACATTGGTCTTTGGATTTTCACTTCTAAACTATCAAGTACATTTTTATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGGTCTTTGGATTTTCACTTCTAAACTATCAAGTACATTTTTATTC  639

seq1  ACTTATTCACCTCTGGGGGTGGGTAATGATGGAGGTGAAACTAGATAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTCACCTCTGGGGGTGGGTAATGATGGAGGTGAAACTAGATAAAC  689

seq1  AATCAGCTTTCTAATCGCTTTTCATAACTGACAGGTTCTTCTGTCTATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGCTTTCTAATCGCTTTTCATAACTGACAGGTTCTTCTGTCTATAC  739

seq1  TCAGTCTCTTCTCATCACCTAACACTGCCCTTTCTCACGCTCCTGTACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTCTTCTCATCACCTAACACTGCCCTTTCTCACGCTCCTGTACAG  789

seq1  TATTGTACTGTTCCTGCATTTATATCTGTGTACATTATAGACCACATATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTACTGTTCCTGCATTTATATCTGTGTACATTATAGACCACATATG  839

seq1  AGGAAGAAGATGCAGGGTTGTTTTCTTGCCGAGTTTTAGTGACCTTGCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAAGATGCAGGGTTGTTTTCTTGCCGAGTTTTAGTGACCTTGCTT  889

seq1  AATATTGTACATCCCAGGTCCATCTATTTTCATGCAAGTTTAATTTTTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGTACATCCCAGGTCCATCTATTTTCATGCAAGTTTAATTTTTCT  939

seq1  TTTGGGTAAAATAATACTCCATTTTGTGGGTGGATCAGATTTTCATTATC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTAAAATAATACTCCATTTTGTGGGTGGATCAGATTTTCATTATC  989

seq1  TATTAACCAGTTGATGGGTAAGTAGGTTTTTTTTTCCCATTCCTTTAGGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAACCAGTTGATGGGTAAGTAGGTTTTTTTTTCCCATTCCTTTAGGT  1039

seq1  AGACAAGGAAGACTTATACCCAAACCTTCCCATTTCTACTCAAACCCCTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGGAAGACTTATACCCAAACCTTCCCATTTCTACTCAAACCCCTT  1089

seq1  GTCTCCTCTTCAGACAATGAATTC  1124
      ||||||||||||||||||||||||
seq2  GTCTCCTCTTCAGACAATGAATTC  1113


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