BAC Information

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BAC

Clone NameB6Ng01-269O17
Chromosome13 (Build37)
Map Location 110,349,045 - 110,488,266
singlet/doubletdoublet
Overlap genePde4d
Upstream geneEG668144, LOC621663, LOC100040968
Downstream geneLOC100040577, Rab3c, EG432803, 9830130M13Rik, Plk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-269O17.bB6Ng01-269O17.g
ACCGA072393GA072394
length318912
definitionB6Ng01-269O17.b B6Ng01-269O17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,487,949 - 110,488,266)(110,349,045 - 110,349,918)
sequence
ctagcccaacacacagtacacttgttaatcatgatatagtaatagttgta
cacttttagtaattactcataataagtagatattgaaggctatatagtgt
taattgcttgctttgggtatttattgcatttttaccatctgtactcttga
tggctacagagctcatcctgaactgaaactccagactttaggacagacct
aagtagatctcatattttcagaggtgggggggggggggtactttagtcct
ttctgctggacttaaagaaaagggcaaactaaagagaaatcctgcccaga
cggcaacgtgttagattc
gaattccattactcggctgctatttgccaaaggggtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtccgtccttcagtagctgaggtaagagactcca
atctcaatcgacttctgagaatttttagaaatgacgtgatataaaggtga
agtggcttgaagaaatcagctgtaccgtagagttcctcactaggaccttg
ttcagactgagaatggacatcagtgggaaggcacagagtgagcggcattt
tcctgccagggcaccaccagcttccaagactatcaataatttcacaagaa
aaccggagtgcacccagcaacatcgcttaacaaatccaccccaggtggct
cagtttctgttctgtggctgcaacgagacacaaaacccagggcggcttac
actgtggggctaggtttggagggagaaagaggagagggttaggtgggaaa
tgttgccattgtgttataatctcaaaaaaaaatgtaaaaagcatttaatc
aaggacgtccttacaacttcagcaggagagtccatggccaaggaaacatg
gtagcaggttgccactggaacatttgctgagagcctagtttctgattcat
aagaggcaggaggcagaaggggcctggcttgagctttctaaaacttcaaa
gtcaacctcccactaagtgacacataccctcttttaaccagcccacaccc
ttcctaaatttctcccaaacaagttcaccagctggagaccaaagcatttt
gaacatgtgtatctatttggccattcttattccaaaccaccataattcag
caaaagactagggagtaaaaacccaggcaacattggattagcagacccat
ccccaggtcagctagggcaatgggttggaaaccaaatgtcgttctcttga
gttgaagtgcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_110487949_110488266
seq2: B6Ng01-269O17.b_53_370 (reverse)

seq1  GAGTCTACCACGTTGCAGTCTGGGCAGGATTTCTCTTTAGTTTGCCCTTT  50
      || |||| |||||||| |||||||||||||||||||||||||||||||||
seq2  GAATCTAACACGTTGCCGTCTGGGCAGGATTTCTCTTTAGTTTGCCCTTT  50

seq1  TCTTTAAGTCCAGCAGAAAGGGCTTAAGTACCCCCCCCCCCCCACCTCTG  100
      ||||||||||||||||||||| || |||||||||||||||||||||||||
seq2  TCTTTAAGTCCAGCAGAAAGGACTAAAGTACCCCCCCCCCCCCACCTCTG  100

seq1  AAAATATGAGATCTACTTAGGTCTGTCCTAAAGTCTGGAGTTTCAGTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATGAGATCTACTTAGGTCTGTCCTAAAGTCTGGAGTTTCAGTTCA  150

seq1  GGATGAGCTCTGTAGCCATCAAGAGTACAGATGGTAAAAATGCAATAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAGCTCTGTAGCCATCAAGAGTACAGATGGTAAAAATGCAATAAAT  200

seq1  ACCCAAAGCAAGCAATTAACACTATATAGCCTTCAATATCTACTTATTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAAGCAAGCAATTAACACTATATAGCCTTCAATATCTACTTATTAT  250

seq1  GAGTAATTACTAAAAGTGTACAACTATTACTATATCATGATTAACAAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAATTACTAAAAGTGTACAACTATTACTATATCATGATTAACAAGTG  300

seq1  TACTGTGTGTTGGGCTAG  318
      ||||||||||||||||||
seq2  TACTGTGTGTTGGGCTAG  318

seq1: chr13_110349045_110349918
seq2: B6Ng01-269O17.g_69_962

seq1  GAATTCCATTACTCGGCTGCTATTTGCCAAAGGGGTGTGTGTGTGTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTACTCGGCTGCTATTTGCCAAAGGGGTGTGTGTGTGTGTGT  50

seq1  GTGTGTGTGTGTGTGTGTCCGTCCTTCAGTAGCTGAGGTAAGAGACTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTCCGTCCTTCAGTAGCTGAGGTAAGAGACTCCA  100

seq1  ATCTCAATCGACTTCTGAGAATTTTTAGAAATGACGTGATATAAAGGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAATCGACTTCTGAGAATTTTTAGAAATGACGTGATATAAAGGTGA  150

seq1  AGTGGCTTGAAGAAATCAGCTGTACCGTAGAGTTCCTCACTAGGACCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTTGAAGAAATCAGCTGTACCGTAGAGTTCCTCACTAGGACCTTG  200

seq1  TTCAGACTGAGAATGGACATCAGTGGGAAGGCACAGAGTGAGCGGCATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACTGAGAATGGACATCAGTGGGAAGGCACAGAGTGAGCGGCATTT  250

seq1  TCCTGCCAGGGCACCACCAGCTTCCAAGACTATCAATAATTTCACAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCAGGGCACCACCAGCTTCCAAGACTATCAATAATTTCACAAGAA  300

seq1  AACCGGAGTGCACCCAGCAACATCGCTTAACAAATCCACCCCAGGTGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGGAGTGCACCCAGCAACATCGCTTAACAAATCCACCCCAGGTGGCT  350

seq1  CAGTTTCTGTTCTGTGGCTGCAACGAGACACAAAACCCAGGGCGGCTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCTGTTCTGTGGCTGCAACGAGACACAAAACCCAGGGCGGCTTAC  400

seq1  ACTGTGGGGCTAGGTTTGGAGGGAGAAAGAGGAGAGGGTTAGGTGGGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGGGCTAGGTTTGGAGGGAGAAAGAGGAGAGGGTTAGGTGGGAAA  450

seq1  TGTTGCCATTGTGTTATAATCTCAAAAAAAAATGTAAAAAGCATTTAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCCATTGTGTTATAATCTCAAAAAAAAATGTAAAAAGCATTTAATC  500

seq1  AAGGACGTCCTTACAACTTCAGCAGGAGAGTCCATGGCCAAGGAAACATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACGTCCTTACAACTTCAGCAGGAGAGTCCATGGCCAAGGAAACATG  550

seq1  GTAGCAGGTTGCCACTGGAACATTTGCTGAGAGCCTAG-TTCTGATTCAT  599
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GTAGCAGGTTGCCACTGGAACATTTGCTGAGAGCCTAGTTTCTGATTCAT  600

seq1  AAGAGGCAGGAGGCAGAAGGGGCCTGGCTTGAGC-TTCTAAAACTTCAAA  648
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAGAGGCAGGAGGCAGAAGGGGCCTGGCTTGAGCTTTCTAAAACTTCAAA  650

seq1  GTCAACCTCCCACT-AGTGACACATA-CCTCTTTTAACCAGCCCACACC-  695
      |||||||||||||| ||||||||||| |||||||||||||||||||||| 
seq2  GTCAACCTCCCACTAAGTGACACATACCCTCTTTTAACCAGCCCACACCC  700

seq1  -TCCT-AATTTCTCCCAAACAAGTTCACCAGCTGGAGACC-AAGCA-TTT  741
       |||| |||||||||||||||||||||||||||||||||| ||||| |||
seq2  TTCCTAAATTTCTCCCAAACAAGTTCACCAGCTGGAGACCAAAGCATTTT  750

seq1  GAACATGTGTATCTA-TTGGCCATTCTTATT-CAAACCACCATAA-TCAG  788
      ||||||||||||||| ||||||||||||||| ||||||||||||| ||||
seq2  GAACATGTGTATCTATTTGGCCATTCTTATTCCAAACCACCATAATTCAG  800

seq1  C-AAAGAATA-GGAGTAAAAA-CCAAGCAACATT-GAATAGCAGACCCAT  834
      | ||||| || |||||||||| ||| |||||||| || ||||||||||||
seq2  CAAAAGACTAGGGAGTAAAAACCCAGGCAACATTGGATTAGCAGACCCAT  850

seq1  -CCCAGGTCAGCTA-GGCAAT-GGTTGG-AACCAAATGTCGTTC  874
       ||||||||||||| |||||| |||||| |||||||||||||||
seq2  CCCCAGGTCAGCTAGGGCAATGGGTTGGAAACCAAATGTCGTTC  894