BAC Information

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BAC

Clone NameB6Ng01-269P08
Chromosome13 (Build37)
Map Location 85,949,756 - 86,107,478
singlet/doubletdoublet
Overlap geneLOC675662
Upstream geneLOC100042841, LOC100042851, LOC100042857, LOC100042862, Ccnh, Rasa1, LOC435373
Downstream geneCox7c, LOC100042887, LOC100042893
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-269P08.bB6Ng01-269P08.g
ACCGA072423GA072424
length1,110944
definitionB6Ng01-269P08.b B6Ng01-269P08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,106,363 - 86,107,478)(85,949,756 - 85,950,434)
sequence
gaattccttgagaaagggagggcaaaggcaagctagtgaacaatagaggg
cacattgaatatgatttaaaaacaaatcagtggctggagagatgactcag
cagttaagagcactgactgcttttctgaaggtcctgagttcaaatctcag
caaccacatggtggcttataaccgttcttaatgtgatctgattcccactt
ctggggtgtctgaagacagctatagtgtacttacatacaataaataagtc
tttaaaaaaatcagtggccaaagcaggatgataacaacatcagaacacct
tcatttgaagccattcagtgtctttgttgacccacaaaacttcagagcaa
atggagagcagtcagacaccagctaaaggtgctagcacttcaagaaacca
tttccttcctgactttactaccttactcactatatcaatgagtctacaag
aaaaattagggaagatcagaatggaattgggaaagaaaaaaaaaaaaaaa
acaagaagagatttaaattgaaggccaaaactgttatggatttttattct
ctttaacattttcacatttttcaattttaaccaattcaaaattaaaaaca
aaaaaggcttaggttggggaattaatgcgatcaaaacaaaattgacttta
atatattcttaatcctttgaaatttaacttaaattaaaacatcacaacta
gttacttttcagtcattttaaggatgtctagtacgtgtgggacaggtttt
aacaatttctttacctatcactgtgacccagctacacactgctaaaaatc
ggaaataccttgctcatttgctaagtgcttagaatttttgatcttgctct
atttctagaggaggtttctgatcttattgtaatgcttctctcttttctaa
ttctctgtagccactttgcacgagtagaacaagcatgaaatgaatgttgt
atagagtagtaatttaatcatgcccagaagtttgttttcttggttgttgg
gtaatactacaacacttcagaagttagatttcattcatgaatggtaatct
gatgtaatcgaagtgtgtatcttgaacgagtattaagtccagtgaaccaa
taaagagact

gaattctgaagatacaattcacagaccatatgaaactcaagtagaaggaa
gaccagagtgtggagtccttctaagaaaggggaacaaaatactcatggaa
ggaaatatggagtcaaagtgtggagcagggattgaaggaaaggccatcca
gagactgccccacctggggattcatctcatgtatagacactaaacccaaa
cttaaactattgcagaggccaaaaaaatgtttgctaacaggagcctgata
tagctgtctcctgaaaggctctgccagagcctgacaaatacagaggtgga
tgctcacagccaaccattggattgagcatggggtccccaatggcggagat
agagaaaggactgaaggagctgaagtggtttgcaaccccataggaaaaac
aacaatattaaccatacagaccacgcccccccaagctcccagggactaaa
tcaccaaccaaagagtacacattaggagactcatggctccagccgcatat
gtagcagaggatagccttgtcggacatcaatgggaggagagtcctgtgaa
gactcgatgccccagtgtagctgaatgccagggcaggaagataggtatgg
gagcaccctcatagaagcagggagagagagggtgagacacagatttcctt
aggggaaaccaggaaaggagataacatttgaaatgtaaataaaaaatacc
caataataataataataataatgatagtgataataataataataaagaat
gctttaacctttcacaagcatgccctttctgaatgagtagctcttttaaa
gggtaccagattctctaagtatatcttaagataaaatatacaaaaaaaaa
aaaggaaaagaaagaaagatggtttcctttgtataataataaatgaaaca
ttacacatacgggaaaaagaaagatataaaggctccatgaaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_86106363_86107478
seq2: B6Ng01-269P08.b_46_1155 (reverse)

seq1  AGTCTCTTTATGTGTTCACTTGACTTAAATTACTCGGTTCAAAGATTACA  50
      |||||||||||  ||||||| |||||||  ||||| |||| |||| ||||
seq2  AGTCTCTTTATTGGTTCACTGGACTTAA--TACTC-GTTC-AAGA-TACA  45

seq1  CACTTCTGATTACATTCAGA-TACCATTTCATTGAATGAAATCTAAACTC  99
      |||||| ||||||| ||||| ||||| |||| ||||||||||||||  ||
seq2  CACTTC-GATTACA-TCAGATTACCA-TTCA-TGAATGAAATCTAACTTC  91

seq1  TGAAGTGTTGTAGTATTACCCAACAACCAAG-AAACAAACTTTCTGGGCA  148
      ||||||||||||||||||||||||||||||| |||||||| |||||||||
seq2  TGAAGTGTTGTAGTATTACCCAACAACCAAGAAAACAAAC-TTCTGGGCA  140

seq1  TGATTAAATTACTACTCTATACAACATTCATTTCATGCTTG-TCTACTCG  197
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGATTAAATTACTACTCTATACAACATTCATTTCATGCTTGTTCTACTCG  190

seq1  TGC-AAGTGGCTACAGAGAATTAGAAAAGAGAGAAGCATTACAATAAGAT  246
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGTGGCTACAGAGAATTAGAAAAGAGAGAAGCATTACAATAAGAT  240

seq1  CAGAAACCTCCTCTAGAAATAGAGCAAGATCAAAAATTCTAAGCACTTAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACCTCCTCTAGAAATAGAGCAAGATCAAAAATTCTAAGCACTTAG  290

seq1  CAAATGAGCAAGGTATTTCCGATTTTTAGCAGTGTGTAGCTGGGTCACAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAGCAAGGTATTTCCGATTTTTAGCAGTGTGTAGCTGGGTCACAG  340

seq1  TGATAGGTAAAGAAATTGTTAAAACCTGTCCCACACGTACTAGACATCCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGGTAAAGAAATTGTTAAAACCTGTCCCACACGTACTAGACATCCT  390

seq1  TAAAATGACTGAAAAGTAACTAGTTGTGATGTTTTAATTTAAGTTAAATT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGACTGAAAAGTAACTAGTTGTGATGTTTTAATTTAAGTTAAATT  440

seq1  TCAAAGGATTAAGAATATATTAAAGTCAATTTTGTTTTGATCGCATTAAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGATTAAGAATATATTAAAGTCAATTTTGTTTTGATCGCATTAAT  490

seq1  TCCCCAACCTAAGCCTTTTTTGTTTTTAATTTTGAATTGGTTAAAATTGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAACCTAAGCCTTTTTTGTTTTTAATTTTGAATTGGTTAAAATTGA  540

seq1  AAAATGTGAAAATGTTAAAGAGAATAAAAATCCATAACAGTTTTGGCCTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTGAAAATGTTAAAGAGAATAAAAATCCATAACAGTTTTGGCCTT  590

seq1  CAATTTAAATCTCTTCTTGTTTTTTTTTTTTTTTTCTTTCCCAATTCCAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTAAATCTCTTCTTGTTTTTTTTTTTTTTTTCTTTCCCAATTCCAT  640

seq1  TCTGATCTTCCCTAATTTTTCTTGTAGACTCATTGATATAGTGAGTAAGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATCTTCCCTAATTTTTCTTGTAGACTCATTGATATAGTGAGTAAGG  690

seq1  TAGTAAAGTCAGGAAGGAAATGGTTTCTTGAAGTGCTAGCACCTTTAGCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAAGTCAGGAAGGAAATGGTTTCTTGAAGTGCTAGCACCTTTAGCT  740

seq1  GGTGTCTGACTGCTCTCCATTTGCTCTGAAGTTTTGTGGGTCAACAAAGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCTGACTGCTCTCCATTTGCTCTGAAGTTTTGTGGGTCAACAAAGA  790

seq1  CACTGAATGGCTTCAAATGAAGGTGTTCTGATGTTGTTATCATCCTGCTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAATGGCTTCAAATGAAGGTGTTCTGATGTTGTTATCATCCTGCTT  840

seq1  TGGCCACTGATTTTTTTAAAGACTTATTTATTGTATGTAAGTACACTATA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCACTGATTTTTTTAAAGACTTATTTATTGTATGTAAGTACACTATA  890

seq1  GCTGTCTTCAGACACCCCAGAAGTGGGAATCAGATCACATTAAGAACGGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTTCAGACACCCCAGAAGTGGGAATCAGATCACATTAAGAACGGT  940

seq1  TATAAGCCACCATGTGGTTGCTGAGATTTGAACTCAGGACCTTCAGAAAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGCCACCATGTGGTTGCTGAGATTTGAACTCAGGACCTTCAGAAAA  990

seq1  GCAGTCAGTGCTCTTAACTGCTGAGTCATCTCTCCAGCCACTGATTTGTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCAGTGCTCTTAACTGCTGAGTCATCTCTCCAGCCACTGATTTGTT  1040

seq1  TTTAAATCATATTCAATGTGCCCTCTATTGTTCACTAGCTTGCCTTTGCC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATCATATTCAATGTGCCCTCTATTGTTCACTAGCTTGCCTTTGCC  1090

seq1  CTCCCTTTCTCAAGGAATTC  1116
      ||||||||||||||||||||
seq2  CTCCCTTTCTCAAGGAATTC  1110


seq1: chr13_85949756_85950434
seq2: B6Ng01-269P08.g_314_991

seq1  GATATAGCTGTCTCCTGAAAGGCTCTGCCAGAGCCTGACAAATACAGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAGCTGTCTCCTGAAAGGCTCTGCCAGAGCCTGACAAATACAGAGG  50

seq1  TGGATGCTCACAGCCAACCATTGGATTGAGCATGGGGTCCCCAATGGCGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGCTCACAGCCAACCATTGGATTGAGCATGGGGTCCCCAATGGCGG  100

seq1  AGATAGAGAAAGGACTGAAGGAGCTGAAGTGGTTTGCAACCCCATAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGAGAAAGGACTGAAGGAGCTGAAGTGGTTTGCAACCCCATAGGAA  150

seq1  AAACAACAATATTAACCATACAGACCACGCCCCCCCAAGCTCCCAGGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACAATATTAACCATACAGACCACGCCCCCCCAAGCTCCCAGGGAC  200

seq1  TAAATCACCAACCAAAGAGTACACATTAGGAGACTCATGGCTCCAGCCGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCACCAACCAAAGAGTACACATTAGGAGACTCATGGCTCCAGCCGC  250

seq1  ATATGTAGCAGAGGATAGCCTTGTCGGACATCAATGGGAGGAGAGTCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTAGCAGAGGATAGCCTTGTCGGACATCAATGGGAGGAGAGTCCTG  300

seq1  TGAAGACTCGATGCCCCAGTGTAGCTGAATGCCAGGGCAGGAAGATAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACTCGATGCCCCAGTGTAGCTGAATGCCAGGGCAGGAAGATAGGT  350

seq1  ATGGGAGCACCCTCATAGAAGCAGGGAGAGAGAGGGTGAGACACAGATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAGCACCCTCATAGAAGCAGGGAGAGAGAGGGTGAGACACAGATTT  400

seq1  CCTTAGGGGAAACCAGGAAAGGAGATAACATTTGAAATGTAAATAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGGGGAAACCAGGAAAGGAGATAACATTTGAAATGTAAATAAAAAA  450

seq1  TACCCAATAATAATAATAATAATAATGATAGTGATAATAATAATAATAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAATAATAATAATAATAATAATGATAGTGATAATAATAATAATAAA  500

seq1  GAATGCTTTAACCTTTCACAAGCATGCCCTTTCTGAATGAGTAGCTCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCTTTAACCTTTCACAAGCATGCCCTTTCTGAATGAGTAGCTCTTT  550

seq1  TAAAGGGTACCAGATTCTCTAAAGTATATCTTAAGATAAAATAATACAAA  600
      |||||||||||||||||||| ||||||||||||||||||||| |||||||
seq2  TAAAGGGTACCAGATTCTCT-AAGTATATCTTAAGATAAAAT-ATACAAA  598

seq1  AAAAAAAAGGAAAAAGAAAGAAAAGATGGTTTCC-TTGTAT-ATAATAAA  648
      |||||||| | ||||||||| ||||||||||||| |||||| ||||||||
seq2  AAAAAAAAAGGAAAAGAAAG-AAAGATGGTTTCCTTTGTATAATAATAAA  647

seq1  TGAAACATTACACATACGGGAAAAAGAAAGA  679
      |||||||||||||||||||||||||||||||
seq2  TGAAACATTACACATACGGGAAAAAGAAAGA  678


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