BAC Information

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BAC

Clone NameB6Ng01-270C17
Chromosome13 (Build37)
Map Location 51,587,545 - 51,588,706
singlet/doubletsinglet
Overlap geneShc3
Upstream geneGm904, LOC100040315, EG667693, LOC100040161, LOC100040190, EG667712, LOC676997, EG667717, Spin1, 4930519N16Rik, EG667728, LOC667733, Ppia-ps13_636.1, LOC625524, Edg3
Downstream geneCks2, Secisbp2, Sema4d, Gadd45g, LOC100040321
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-270C17.bB6Ng01-270C17.g
ACCGA072580GA072581
length1751,141
definitionB6Ng01-270C17.b B6Ng01-270C17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
taggcacgcatcaccacacctagttatttcattattatggagggaagggt
ttgaactgactcaaggtcccagggtacccatagtggaggaggcagggaag
caggagccgaaggcagctgggcacactgcagccacaggaaggaaaaagag
agggggagagggggagaggaggaga
gaattctagaaaatgccaagtaaactttgcaggaagctggggagggtgac
ctctgaaggcagcttggagtgaggcagagtaagagggggcagtgtggtgt
ccccatgatgggaagccacacctgacactgcttcctgtctgagatctgcc
cagtacttcaaggtgaaggaaagctaggagtgggggcgcaaaggaagccc
aagtttatgcacctccttcctgagcagcaggcctcaaatgctcaagacac
aaagtgaactgaaacacaaagaaagttcttcactctgtctagaaccatgt
gacattgatggaatcaaactgagtctatacccatcccccagaactcagtt
tttctcaggtccttaaggttctcagaagtatggaatgggggcagaccctg
ggagaaacccctgaccactttgctcacctattcatctgatggccaaggag
attaccccatagtcagcctctcctggactgaggaagtaaacagtccattc
ccccacccccacccccaggttcatagcaaatgggaacgacagcctgggcc
agcacccagtagccacttgggatcttgtccaggcatcatagcatgcaact
gagcagggcaaacagtgttaagagcgcattcagcaagttccccaccctct
ggctttcagggcaatgctgaacatccttcaaaggcctttctcaagagcag
ggaggtagctcagttagtagagcacttgcttaggatgcacaaagccctgg
cttcaatctgcagcaccacatagaactgagtgtggtgcctggaaggtgag
aggattagaagttctaatcctgctacagtcactccctgcgacatcctgag
tttgaggatagcttgggatattgtcttagtcagggtttctattcctgcac
aaacatcatgaccaagaagcaagttggggaggaaagggtttattcggctt
atacttgcatgctgctgtcatcaccaaaggaagtcaggactggaactcag
cagtcaggagcagagctgatgcagagccatgaggatgttacttactgcct
gcttccctgctgctcagcctgctcttcttatagaagccagactacaagcc
taaaagtgtccaccacaggacctcccttgatcacttattga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_51587545_51588706
seq2: B6Ng01-270C17.g_67_1207

seq1  GAATTCTAGAAAATGCCAAGTAAACTTTGCAGGAAGCTGGGGAGGGTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGAAAATGCCAAGTAAACTTTGCAGGAAGCTGGGGAGGGTGAC  50

seq1  CTCTGAAGGCAGCTTGGAGTGAGGCAGAGTAAGAGGGGGCAGTGTGGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAAGGCAGCTTGGAGTGAGGCAGAGTAAGAGGGGGCAGTGTGGTGT  100

seq1  CCCCATGATGGGAAGCCACACCTGACACTGCTTCCTGTCTGAGATCTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATGATGGGAAGCCACACCTGACACTGCTTCCTGTCTGAGATCTGCC  150

seq1  CAGTACTTCAAGGTGAAGGAAAGCTAGGAGTGGGGGCGCAAAGGAAGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACTTCAAGGTGAAGGAAAGCTAGGAGTGGGGGCGCAAAGGAAGCCC  200

seq1  AAGTTTATGCACCTCCTTCCTGAGCAGCAGGCCTCAAATGCTCAAGACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTATGCACCTCCTTCCTGAGCAGCAGGCCTCAAATGCTCAAGACAC  250

seq1  AAAGTGAACTGAAACACAAAGAAAGTTCTTCACTCTGTCTAGAACCATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGAACTGAAACACAAAGAAAGTTCTTCACTCTGTCTAGAACCATGT  300

seq1  GACATTGATGGAATCAAACTGAGTCTATACCCATCCCCCAGAACTCAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTGATGGAATCAAACTGAGTCTATACCCATCCCCCAGAACTCAGTT  350

seq1  TTTCTCAGGTCCTTAAGGTTCTCAGAAGTATGGAATGGGGGCAGACCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAGGTCCTTAAGGTTCTCAGAAGTATGGAATGGGGGCAGACCCTG  400

seq1  GGAGAAACCCCTGACCACTTTGCTCACCTATTCATCTGATGGCCAAGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAACCCCTGACCACTTTGCTCACCTATTCATCTGATGGCCAAGGAG  450

seq1  ATTACCCCATAGTCAGCCTCTCCTGGACTGAGGAAGTAAACAGTCCATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCCCATAGTCAGCCTCTCCTGGACTGAGGAAGTAAACAGTCCATTC  500

seq1  CCCCACCCCCACCCCCAGGTTCATAGCAAATGGGAACGACAGCCTGGGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCCCCACCCCCAGGTTCATAGCAAATGGGAACGACAGCCTGGGCC  550

seq1  AGCACCCAGTAGCCACTTGGGATCTTGTCCAGGCATCATAGCATGCAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCCAGTAGCCACTTGGGATCTTGTCCAGGCATCATAGCATGCAACT  600

seq1  GAGCAGGGCAAACAGTGTTAAGAGCGCATTCAGCAAGTTCCCCACCCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGGGCAAACAGTGTTAAGAGCGCATTCAGCAAGTTCCCCACCCTCT  650

seq1  GGCTTTCAGGGCAATGCTGAACATCCTTCAAAGGCCTTTCTCAAGAGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTCAGGGCAATGCTGAACATCCTTCAAAGGCCTTTCTCAAGAGCAG  700

seq1  GGAGGTAGCTCAGTTAGTAGAGCACTTGCTTAGGATGCACAAAGCCCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTAGCTCAGTTAGTAGAGCACTTGCTTAGGATGCACAAAGCCCTGG  750

seq1  CTTCAATCTGCAGCACCACATAGAACTGAGTGTGGTGCCTGGAAGGTGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAATCTGCAGCACCACATAGAACTGAGTGTGGTGCCTGGAAGGTGAG  800

seq1  AGGATTAGAAGTTCTAATCCTGCTACAGTCACTCCCTGCGACATCCTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTAGAAGTTCTAATCCTGCTACAGTCACTCCCTGCGACATCCTGAG  850

seq1  TTTGAGGATAGCTTGGGATATTGTCTTAGTCAGGGTTTCTATTCCTGCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGATAGCTTGGGATATTGTCTTAGTCAGGGTTTCTATTCCTGCAC  900

seq1  AAACATCATGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATTCGGCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCATGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATTCGGCTT  950

seq1  ATACTTGCATGCTGCTGTTCATCACCAAAGGAAGTCAGGACTGGAACTCA  1000
      ||||||||||||||||| ||||||||||||||||||||||||||||||| 
seq2  ATACTTGCATGCTGCTG-TCATCACCAAAGGAAGTCAGGACTGGAACTC-  998

seq1  AGCAGGTCAGGGAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTACT  1050
      |||| |||| |||||| ||||||||||||| ||||||   ||||||||||
seq2  AGCA-GTCA-GGAGCA-GAGCTGATGCAGA-GCCATG--AGGATGTTACT  1042

seq1  TACTGGCTTGCTTCCCCTGGCTTGCTCAGCCTGCTC-TCTTATAGAACCC  1099
      |||| || ||||| |||||   |||||||||||||| |||||||||| ||
seq2  TACT-GCCTGCTT-CCCTG--CTGCTCAGCCTGCTCTTCTTATAGAAGCC  1088

seq1  AAGACTACCAGCCCAGAGATGGTCCCACCCACAAGGGGCCTTTCCCCCTT  1149
       ||||||| |||| | | |  ||||   |||||  || |||    |||||
seq2  -AGACTACAAGCCTA-AAAGTGTCC--ACCACA--GGACCT----CCCTT  1128

seq1  GATCACTAATTGA  1162
      ||||||| |||||
seq2  GATCACTTATTGA  1141