BAC Information

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BAC

Clone NameB6Ng01-270F03
Chromosome13 (Build37)
Map Location 15,998,610 - 16,129,636
singlet/doubletdoublet
Overlap geneLOC665157, Inhba
Upstream geneEG665099, LOC670994, EG625121, Gli3
Downstream geneLOC625181, LOC665191, 5033411D12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-270F03.bB6Ng01-270F03.g
ACCGA072690GA072691
length1,126506
definitionB6Ng01-270F03.b B6Ng01-270F03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,998,610 - 15,999,739)(16,129,128 - 16,129,636)
sequence
gaattcttggttgatttgtcatgccaagatgatagagattagagtacaat
gtgtcacatagaaacacacaattctgtgatattaacgcttattgtgatac
acctattctctttattggagatgcttattcttgaagcactattgaatcat
ttgcttgttcttagagatgaattatttaagatttaatcagtgatcctttt
gaattatgatacattcagacatatgtctggctgaattcaccacttaagag
gaaaatcacagatggaccaaggctgagccaagatcagaatttttggattc
aaaaataatatttattgtctgttttacaccagaaccactaaatatggact
caatggtaaaacccaaaaacctctttttagaatgccttgtatgtggagat
tgtcattgtaaattttgggactttggaaagccctcagttcccctgggtgt
ttgactatatcctatgtgtaactatcaatgtagtacaatcggttgaataa
ttacatcttttgaacagcaaataaattgattgccgctatgttgaattaga
ccctctcctcagtgatttgatcattaactcaattgagttactaggatcac
acagttgattatatgaaaattaaatctagatgttcacattggattgattc
tactggtattttcatgtatcaactttgttagggtaaggtaaaatgaaagt
ttgctccttttttcacttagacaacatgccaaatatagaaaataaggctt
tcatagttctttgctgggtataagatggttaagttgctaaggagctgctt
actgcataaaaacatttcaaatctggtttactatataggtgtatgatttg
taatcgcaagaataaaggaaggcaaaaagaaaagaaaggcaagaaaagaa
gccagtgggaattctaggtctagtgagtgtatctgactttttcttagctc
tcagactgtagctggagatatgggaagacgtgatcactcatagttgccaa
ttccaatgagacatatgaccttcagtgtcttctgtgaatgaccagcagca
aaagagcagtgggaaagatcagcatgaccaaatttggtatgagtctctta
gaataaacatatgatgaatgctggca

agtcactaatagagtaagacaggtatcagtttttctaaggggtccacctt
cacattcttatgaaccaaaagtttaacttcatagaggttttccagtatat
tgacttgttaaagaatcttaaaagtgtgaaatgttgagtcactgttccaa
aaatgtcacaaaataaatattttctgatcttactctgagcatgttgcttc
aaaactcctggcaggtgaagaattagaacatttttagtgatgtttacagg
tgattattatatggacataggaaatgactggggcagagcaccacactcca
tttgaaatttctctcttggcttcagtattaaaagagaaaatccagtagta
acatgaagactgatagaacataacaatagaaggagaagaggaagaggaag
aagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaa
gaagaagaagaagaagaagaagaagaagaagaaagaggaggaggaggagg
aggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_15998610_15999739
seq2: B6Ng01-270F03.b_45_1170

seq1  GAATTCTTGGTTGATTTGTCATGCCAAGATGATAGAGATTAGAGTACAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGTTGATTTGTCATGCCAAGATGATAGAGATTAGAGTACAAT  50

seq1  GTGTCACATAGAAACACACAATTCTGTGATATTAACGCTTATTGTGATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCACATAGAAACACACAATTCTGTGATATTAACGCTTATTGTGATAC  100

seq1  ACCTATTCTCTTTATTGGAGATGCTTATTCTTGAAGCACTATTGAATCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATTCTCTTTATTGGAGATGCTTATTCTTGAAGCACTATTGAATCAT  150

seq1  TTGCTTGTTCTTAGAGATGAATTATTTAAGATTTAATCAGTGATCCTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGTTCTTAGAGATGAATTATTTAAGATTTAATCAGTGATCCTTTT  200

seq1  GAATTATGATACATTCAGACATATGTCTGGCTGAATTCACCACTTAAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATGATACATTCAGACATATGTCTGGCTGAATTCACCACTTAAGAG  250

seq1  GAAAATCACAGATGGACCAAGGCTGAGCCAAGATCAGAATTTTTGGATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCACAGATGGACCAAGGCTGAGCCAAGATCAGAATTTTTGGATTC  300

seq1  AAAAATAATATTTATTGTCTGTTTTACACCAGAACCACTAAATATGGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAATATTTATTGTCTGTTTTACACCAGAACCACTAAATATGGACT  350

seq1  CAATGGTAAAACCCAAAAACCTCTTTTTAGAATGCCTTGTATGTGGAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGTAAAACCCAAAAACCTCTTTTTAGAATGCCTTGTATGTGGAGAT  400

seq1  TGTCATTGTAAATTTTGGGACTTTGGAAAGCCCTCAGTTCCCCTGGGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTGTAAATTTTGGGACTTTGGAAAGCCCTCAGTTCCCCTGGGTGT  450

seq1  TTGACTATATCCTATGTGTAACTATCAATGTAGTACAATCGGTTGAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTATATCCTATGTGTAACTATCAATGTAGTACAATCGGTTGAATAA  500

seq1  TTACATCTTTTGAACAGCAAATAAATTGATTGCCGCTATGTTGAATTAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATCTTTTGAACAGCAAATAAATTGATTGCCGCTATGTTGAATTAGA  550

seq1  CCCTCTCCTCAGTGATTTGATCATTAACTCAATTGAGTTACTAGGATCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCCTCAGTGATTTGATCATTAACTCAATTGAGTTACTAGGATCAC  600

seq1  ACAGTTGATTATATGAAAATTAAATCTAGATGTTCACATTGGATTGATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGATTATATGAAAATTAAATCTAGATGTTCACATTGGATTGATTC  650

seq1  TACTGGTATTTTCATGTATCAACTTTGTTAGGGTAAGGTAAAATGAAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGTATTTTCATGTATCAACTTTGTTAGGGTAAGGTAAAATGAAAGT  700

seq1  TTGCTCCTTTTTTCACTTAGACAACATGCCAAATATAGAAAATAAGGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCCTTTTTTCACTTAGACAACATGCCAAATATAGAAAATAAGGCTT  750

seq1  TCATAGTTCTTTGCTGGGTATAAGATGGTTAAGTTGCTAAGGAGCTGCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGTTCTTTGCTGGGTATAAGATGGTTAAGTTGCTAAGGAGCTGCTT  800

seq1  ACTGCATAAAAACATTTCAAATCTGGTTTACTATATAGGTGTATGATTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCATAAAAACATTTCAAATCTGGTTTACTATATAGGTGTATGATTTG  850

seq1  TAATCGCAAGAAT-AAGGAAGGCAAAAAGAAAAGAAAGGCAAGAAAAGAA  899
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TAATCGCAAGAATAAAGGAAGGCAAAAAGAAAAGAAAGGCAAGAAAAGAA  900

seq1  GCCAGTGGGAATTCTAGGTCTAGTGAGTGTATCTGACTTTTTCTTAGCTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTGGGAATTCTAGGTCTAGTGAGTGTATCTGACTTTTTCTTAGCTC  950

seq1  TCAGACTGTAGGCTGGGAGATAATGGGAAGACGGTGATCAACTCATAGTT  999
      |||||||||| ||| |||||| |||||||||| |||||| ||||||||||
seq2  TCAGACTGTA-GCT-GGAGAT-ATGGGAAGAC-GTGATC-ACTCATAGTT  995

seq1  GCCAATTCCAATGAGACATATGACCTTTCAGTGTC-TCTGTGAATGAACC  1048
      ||||||||||||||||||||||||| ||||||||| |||||||||| |||
seq2  GCCAATTCCAATGAGACATATGACC-TTCAGTGTCTTCTGTGAATG-ACC  1043

seq1  AGCAGCAAAAGAGCAGTGGGAAAGATCAGCATGACCAAATTGGCCATGAG  1098
      ||||||||||||||||||||||||||||||||||||||||| |  |||| 
seq2  AGCAGCAAAAGAGCAGTGGGAAAGATCAGCATGACCAAATTTGGTATGA-  1092

seq1  GTCTCTTAG-ATAAACATATGATG-ATGCTGGCA  1130
      ||||||||| |||||||||||||| |||||||||
seq2  GTCTCTTAGAATAAACATATGATGAATGCTGGCA  1126


seq1: chr13_16129128_16129636
seq2: B6Ng01-270F03.g_65_576 (reverse)

seq1  CCTCCTCCTCCTCCTCCTCCTCT---TTCTTCTTCTTCTTCTTCTTCTTC  47
      |||||||||||||||||||||||   ||||||||||||||||||||||||
seq2  CCTCCTCCTCCTCCTCCTCCTCTTTCTTCTTCTTCTTCTTCTTCTTCTTC  50

seq1  TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT  97
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT  100

seq1  CTTCTTCTTCCTCTTCCTCTTCTCCTTCTATTGTTATGTTCTATCAGTCT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTTCCTCTTCCTCTTCTCCTTCTATTGTTATGTTCTATCAGTCT  150

seq1  TCATGTTACTACTGGATTTTCTCTTTTAATACTGAAGCCAAGAGAGAAAT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTACTACTGGATTTTCTCTTTTAATACTGAAGCCAAGAGAGAAAT  200

seq1  TTCAAATGGAGTGTGGTGCTCTGCCCCAGTCATTTCCTATGTCCATATAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATGGAGTGTGGTGCTCTGCCCCAGTCATTTCCTATGTCCATATAA  250

seq1  TAATCACCTGTAAACATCACTAAAAATGTTCTAATTCTTCACCTGCCAGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCACCTGTAAACATCACTAAAAATGTTCTAATTCTTCACCTGCCAGG  300

seq1  AGTTTTGAAGCAACATGCTCAGAGTAAGATCAGAAAATATTTATTTTGTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGAAGCAACATGCTCAGAGTAAGATCAGAAAATATTTATTTTGTG  350

seq1  ACATTTTTGGAACAGTGACTCAACATTTCACACTTTTAAGATTCTTTAAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTTGGAACAGTGACTCAACATTTCACACTTTTAAGATTCTTTAAC  400

seq1  AAGTCAATATACTGGAAAACCTCTATGAAGTTAAACTTTTGGTTCATAAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAATATACTGGAAAACCTCTATGAAGTTAAACTTTTGGTTCATAAG  450

seq1  AATGTGAAGGTGGACCCCTTAGAAAAACTGATACCTGTCTTACTCTATTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGAAGGTGGACCCCTTAGAAAAACTGATACCTGTCTTACTCTATTA  500

seq1  GTGACTGAATTC  509
      ||||||||||||
seq2  GTGACTGAATTC  512


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