BAC Information

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BAC

Clone NameB6Ng01-270J01
Chromosome13 (Build37)
Map Location 75,865,232 - 75,866,400
singlet/doubletsinglet
Overlap geneEll2
Upstream geneCast, LOC622204, EG544954, Pcsk1, LOC672443, LOC666764, LOC100042606, LOC100042986
Downstream geneLOC666786, Glrx, Rhobtb3, LOC666553, LOC622313, Spata9, Rfesd, LOC100043008, Gpr150, Arsk, AK129128, Gm276, Mctp1, LOC666603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-270J01.bB6Ng01-270J01.g
ACCGA072871GA072872
length1,1931,196
definitionB6Ng01-270J01.b B6Ng01-270J01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttctttagttctgtaccccatttttaatggggttatttcaatt
tctggagtccagcttcctgagttctttgtatagattggatattagtcccc
tatcagatttagtattggtaaaaattctttcccaatctgttggtggcctt
tttgtcttattgacagtgtcctttgccttacagaagctttgcaattttat
gaggtcccatttcttgattcttgaacttacagcacaaaccattggtgttc
tgttcaggaatttttcccctgtgcccatatcttcgaggcttttccccact
ttctcctctataagtttcagtgtctctagttttatgtggaggtctttgat
ccacgtagacttgagctttgtacaaggagataagaatggatcaatttgca
tttctacatgagaaccgcgagttgtgccagcaccatttgttggaaatact
gtcttttttctactggatggttttagctcccttgtcaaagatcaagtgac
attaggtgtgtgggttcttttctggatcttcagttctattccattgatgt
atctgactgtagctgtaccagtaccatgcagtttttatcacaattgctct
gtagtacagcttgaggtcaggcatggtgattccaccagaggttcttttat
tgttgagaatagtttttgctatcctagatttttttgttattccagatgaa
tttgcaaattgccctttctaactctgtgaagaattgagttggaattttga
tggggattgcattgaatctgtagattgcttttggcaggatagccattttt
actatattaatcctgccaatccatgagcatgggagatctttccatcttct
gagatcttcttcaatttctttcttcagatacttgaagttcttgtcataca
gatctttcacttccttagttagagtcacatcaaggtatttatattatttg
tgactattgtgaagggtgttgtttctctattttctttctcagcctgttta
tcgtagtgtagagaaagcattgatttgttgagtacactgcacggaaagtt
gtttatcaggttaggagtctctggtgactttacgtcacttacactatagc
atcatatcactggcaaatagtgaatatttgactctccgtccagtgcatac
cattggatctcttggttgtctcataatgacctctgcgcctcga
gaattctaagtcattgattatttgggttttatttatatagctaggcagta
gttttcataggagaaaatggaaactatgtctgagaggcacctacagctat
tccatagtgggaaaggacacacaggaaatttgatgctcattgaaagtagg
ggagcagttggttctgattgctgagctcatgaatgttagtaactgtgtac
aactgaaaatatcctcagttattctctagtgtgggtcagccaatttgtct
tcatgggtctaatgtatacctagagcacctacatgtaacttcagatcttt
aaggtagactattcagaggacaatgacaaagcactataccagtttccaaa
agctgcatctttatagtcagataagcttcatgaaaagtagcactgttctc
tcttcctcttatacagtgaaagtgaggcaggtgacttccagggatgtcgg
ttccagtagagtttagaaaattagtctacatagctttgtgaaattgaaca
tttctaagggcaaacagttggtagaggcaagctatactgcaggtgaaaaa
ctcttcccacgcattgaagatctctgaaagagtgtttctggaaagttcac
tcaatgtttaatgcagtcagttgttgatactatagacataacagttattt
cacaaactatagaagttatctaattgacatattaataagttgttattatt
ctgattgcttcttggttttatggtgttttctgggtttgttttgtttttgt
ttgggtttgactttctcagatagggcctctctgtgttgcccaggctagcc
ttgaacttttcaatgtgggtcagactgaccttgaacttgaaagaatcctc
ccacctctccctgccaagtgctgtaatgcctggcatttagctacctgctc
agcttgttttagttttgtgaagcctccctatatgtcccagctagcctgga
aatttgagatcctttccctttggtttccagagcactaagatttctggcat
aatgctaacatgaccaagcttctctattagtattgaaagaaatataagaa
gctaaggtaaagaaatatttcttcaactccttgaagaaattccaagcctt
gaacaaaatacatgcagaacctaacattttaagaaagagttcaataacaa
taaagggaatttggctaggactccttccatacagtcccttctataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_75865232_75866400
seq2: B6Ng01-270J01.g_65_1260

seq1  GAATTCTAAGTCATTGATTATTTGGGTTTTATTTATATAGCTAGGCAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGTCATTGATTATTTGGGTTTTATTTATATAGCTAGGCAGTA  50

seq1  GTTTTCATAGGAGAAAATGGAAACTATGTCTGAGAGGCACCTACAGCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCATAGGAGAAAATGGAAACTATGTCTGAGAGGCACCTACAGCTAT  100

seq1  TCCATAGTGGGAAAGGACACACAGGAAATTTGATGCTCATTGAAAGTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAGTGGGAAAGGACACACAGGAAATTTGATGCTCATTGAAAGTAGG  150

seq1  GGAGCAGTTGGTTCTGATTGCTGAGCTCATGAATGTTAGTAACTGTGTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGTTGGTTCTGATTGCTGAGCTCATGAATGTTAGTAACTGTGTAC  200

seq1  AACTGAAAATATCCTCAGTTATTCTCTAGTGTGGGTCAGCCAATTTGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAAATATCCTCAGTTATTCTCTAGTGTGGGTCAGCCAATTTGTCT  250

seq1  TCATGGGTCTAATGTATACCTAGAGCACCTACATGTAACTTCAGATCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGGTCTAATGTATACCTAGAGCACCTACATGTAACTTCAGATCTTT  300

seq1  AAGGTAGACTATTCAGAGGACAATGACAAAGCACTATACCAGTTTCCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAGACTATTCAGAGGACAATGACAAAGCACTATACCAGTTTCCAAA  350

seq1  AGCTGCATCTTTATAGTCAGATAAGCTTCATGAAAAGTAGCACTGTTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCATCTTTATAGTCAGATAAGCTTCATGAAAAGTAGCACTGTTCTC  400

seq1  TCTTCCTCTTATACAGTGAAAGTGAGGCAGGTGACTTCCAGGGATGTCGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTCTTATACAGTGAAAGTGAGGCAGGTGACTTCCAGGGATGTCGG  450

seq1  TTCCAGTAGAGTTTAGAAAATTAGTCTACATAGCTTTGTGAAATTGAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTAGAGTTTAGAAAATTAGTCTACATAGCTTTGTGAAATTGAACA  500

seq1  TTTCTAAGGGCAAACAGTTGGTAGAGGCAAGCTATACTGCAGGTGAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAGGGCAAACAGTTGGTAGAGGCAAGCTATACTGCAGGTGAAAAA  550

seq1  CTCTTCCCACGCATTGAAGATCTCTGAAAGAGTGTTTCTGGAAAGTTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCCACGCATTGAAGATCTCTGAAAGAGTGTTTCTGGAAAGTTCAC  600

seq1  TCAATGTTTAATGCAGTCAGTTGTTGATACTATAGACATAACAGTTATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGTTTAATGCAGTCAGTTGTTGATACTATAGACATAACAGTTATTT  650

seq1  CACAAACTATAGAAGTTATCTAATTGACATATTAATAAGTTGTTATTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACTATAGAAGTTATCTAATTGACATATTAATAAGTTGTTATTATT  700

seq1  CTGATTGCTTCTTGGTTTTATGGTGTTTTCTGGGTTTGTTTTGTTTTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTGCTTCTTGGTTTTATGGTGTTTTCTGGGTTTGTTTTGTTTTTGT  750

seq1  TTGGGTTTGACTTTCTCAGATAGGGCCTCTCTGTGTTGCCCAGGCTAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTTTGACTTTCTCAGATAGGGCCTCTCTGTGTTGCCCAGGCTAGCC  800

seq1  TTGAAC-TTTCAATGTGGGTCAGACTGACCTTGAACTTGAAAGAATCCTC  849
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTTTTCAATGTGGGTCAGACTGACCTTGAACTTGAAAGAATCCTC  850

seq1  CCACCTCTCCCTGCCAAGTGCTGTAATGCCTGGCATTTAGCTACCTGCTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCTCCCTGCCAAGTGCTGTAATGCCTGGCATTTAGCTACCTGCTC  900

seq1  AGCTTGTTTTAGTTTTGTGAAGCCTCCCTATATGTCCCAGGCTAGCCTGG  949
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGCTTGTTTTAGTTTTGTGAAGCCTCCCTATATGTCCCA-GCTAGCCTGG  949

seq1  -AATTTGAGATCCTTT-CCTTTGGTTTCCAGAGCACTAAGATTTCTGGCA  997
       ||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAATTTGAGATCCTTTCCCTTTGGTTTCCAGAGCACTAAGATTTCTGGCA  999

seq1  T-ATGCTAACATGACCAAGC-TCTCTATTAGTA-TGAAAG-AATATA--G  1041
      | |||||||||||||||||| |||||||||||| |||||| ||||||   
seq2  TAATGCTAACATGACCAAGCTTCTCTATTAGTATTGAAAGAAATATAAGA  1049

seq1  AGCT-AGGT-AAGATAT-GGTCTTC-ACTCC-TGAAGAATTTCC-AGCC-  1084
      |||| |||| |||| ||   ||||| ||||| ||||||| |||| |||| 
seq2  AGCTAAGGTAAAGAAATATTTCTTCAACTCCTTGAAGAAATTCCAAGCCT  1099

seq1  TGA--CAAATACATGCAGA--CTAACA-TTTAGGAAAGAGTT-AATAACA  1128
      |||   |||||||||||||  |||||| |||| ||||||||| |||||| 
seq2  TGAACAAAATACATGCAGAACCTAACATTTTAAGAAAGAGTTCAATAAC-  1148

seq1  AATAAAGG--ATTTAGCTAGAAC-CCT--CACACAG--CCTTCTATAA  1169
      ||||||||  |||| ||||| || |||  || ||||  ||||||||||
seq2  AATAAAGGGAATTTGGCTAGGACTCCTTCCATACAGTCCCTTCTATAA  1196