BAC Information

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BAC

Clone NameB6Ng01-271H24
Chromosome6 (Build37)13 (Build37)
Map Location 138,819,715 - 138,819,83389,577,821 - 89,578,647
singlet/doubletsingletsinglet
Overlap geneEG668196
Upstream gene9830102E05Rik, Mgst1, Lmo3, Igbp1b
Downstream geneEG632971, LOC100043898, Pik3c2g
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271H24.bB6Ng01-271H24.g
ACCGA073564GA073565
length589827
definitionB6Ng01-271H24.b B6Ng01-271H24.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(138,819,715 - 138,819,833)(89,577,821 - 89,578,647)
sequence
gaattcttttttttttctattatgactttcaaataattagacaactctta
tccaaattatcatgtttataatcccactaattaaactgctaatgtgatct
aaaatatcttcacagaaacatctgaaataatattcgtgcaaatatctgag
aacctgaattagtcaagttgacacataaaattaactgtcacagaacaaag
atttatcagctttgcaatagagcgtgttccattcagccgtagttaatctg
catagagacagtaatagggtttgtctttctgcctaacatgtagcactacc
tgcatacaagaatacacgcattgtattttcttgagggtgacacaaatgcc
ttgcatgatggttaccccctctttcatttcctataaattacacataattt
aaatactatgatcaaagtgaaatatatatatatgtatatgtatgcatata
tacatatatgtatatatacatatatatgtgtatatatatatatatatata
tatatatatatatatatatatatatatatatatatatatatatatatata
tatatatatatatatatatatatatatatatatatatat

gaattctgtgaaactagatgttccttgatgtaatgattcttaaacaatta
aaaactgaggcatggggcacagcacaacacagccctaatggcccaggtgc
atgctgtgtgttctcatcttggagacaatgtaataactacacaatggcag
ttccagattaatgcttgacttgtgaagaaagtttgaaaaaattattagaa
aatgaaatagagcaaacactgggaccccaagaaaggaaaaacaattatta
aagttatcaaataagttttgcataacatttgagagtggttcctgggtaag
caagtatagaatatgtaaaatcttatattagtaaaactaagttaaaacac
tgggactcttaggagagtcattgtgtgcaatgtgcagaagcagaaagcta
gtggaactattgagttaagggttaacttgattctttctggctattgccta
gcagctttgcccatgtcatttatcattagagcttcacaagaaaatgcaag
tagttggcctcagagctctgttctctgaagtataataagttaaaatttaa
ataataataagtttgccattattattattttggctataggcctggaaata
gggaagcttgaaacttgggaacaattttaattcttgattttttgtgtgat
gtggttaatcctttaaatttgatttggcgatgattatacaatgtctattt
ttacccacttttgaggtatcaataaaagagtgaggcaaaaaaaggtgaga
gagcatgagaagagcatgtgaagagtgagtgaaggaagaatgtgaagagt
gagtgaagagagaaggtgaagagtgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_138819715_138819833
seq2: B6Ng01-271H24.b_467_597

seq1  ATATATATATAT------------ATATATATATATATGTATATATGTAT  38
      ||||||||||||            ||||||| ||||||||||||||  ||
seq2  ATATATATATATGTATATGTATGCATATATACATATATGTATATATACAT  50

seq1  ATATATGTGTATATATGTATATATATGTATATATATGTATATGTATATAT  88
      |||||||||||||||| ||||||||| ||||||||| ||||| |||||||
seq2  ATATATGTGTATATATATATATATATATATATATATATATATATATATAT  100

seq1  ATATATATATATATATATATATATATATATA  119
      |||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATATATA  131


seq1: chr13_89577821_89578647
seq2: B6Ng01-271H24.g_65_891 (reverse)

seq1  CTCACTCTTCACCTTCTCTCTTCACTCACTCTTCACATTCTTCCTTCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCTTCACCTTCTCTCTTCACTCACTCTTCACATTCTTCCTTCACT  50

seq1  CACTCTTCACATGCTCTTCTCATGCTCTCTCACCTTTTTTTGCCTCACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTTCACATGCTCTTCTCATGCTCTCTCACCTTTTTTTGCCTCACTC  100

seq1  TTTTATTGATACCTCAAAAGTGGGTAAAAATAGACATTGTATAATCATCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTGATACCTCAAAAGTGGGTAAAAATAGACATTGTATAATCATCG  150

seq1  CCAAATCAAATTTAAAGGATTAACCACATCACACAAAAAATCAAGAATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATCAAATTTAAAGGATTAACCACATCACACAAAAAATCAAGAATTA  200

seq1  AAATTGTTCCCAAGTTTCAAGCTTCCCTATTTCCAGGCCTATAGCCAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTTCCCAAGTTTCAAGCTTCCCTATTTCCAGGCCTATAGCCAAAA  250

seq1  TAATAATAATGGCAAACTTATTATTATTTAAATTTTAACTTATTATACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATAATGGCAAACTTATTATTATTTAAATTTTAACTTATTATACTT  300

seq1  CAGAGAACAGAGCTCTGAGGCCAACTACTTGCATTTTCTTGTGAAGCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAACAGAGCTCTGAGGCCAACTACTTGCATTTTCTTGTGAAGCTCT  350

seq1  AATGATAAATGACATGGGCAAAGCTGCTAGGCAATAGCCAGAAAGAATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATAAATGACATGGGCAAAGCTGCTAGGCAATAGCCAGAAAGAATCA  400

seq1  AGTTAACCCTTAACTCAATAGTTCCACTAGCTTTCTGCTTCTGCACATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAACCCTTAACTCAATAGTTCCACTAGCTTTCTGCTTCTGCACATTG  450

seq1  CACACAATGACTCTCCTAAGAGTCCCAGTGTTTTAACTTAGTTTTACTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAATGACTCTCCTAAGAGTCCCAGTGTTTTAACTTAGTTTTACTAA  500

seq1  TATAAGATTTTACATATTCTATACTTGCTTACCCAGGAACCACTCTCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGATTTTACATATTCTATACTTGCTTACCCAGGAACCACTCTCAAA  550

seq1  TGTTATGCAAAACTTATTTGATAACTTTAATAATTGTTTTTCCTTTCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATGCAAAACTTATTTGATAACTTTAATAATTGTTTTTCCTTTCTTG  600

seq1  GGGTCCCAGTGTTTGCTCTATTTCATTTTCTAATAATTTTTTCAAACTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCCAGTGTTTGCTCTATTTCATTTTCTAATAATTTTTTCAAACTTT  650

seq1  CTTCACAAGTCAAGCATTAATCTGGAACTGCCATTGTGTAGTTATTACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACAAGTCAAGCATTAATCTGGAACTGCCATTGTGTAGTTATTACAT  700

seq1  TGTCTCCAAGATGAGAACACACAGCATGCACCTGGGCCATTAGGGCTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCAAGATGAGAACACACAGCATGCACCTGGGCCATTAGGGCTGTG  750

seq1  TTGTGCTGTGCCCCATGCCTCAGTTTTTAATTGTTTAAGAATCATTACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTGTGCCCCATGCCTCAGTTTTTAATTGTTTAAGAATCATTACAT  800

seq1  CAAGGAACATCTAGTTTCACAGAATTC  827
      |||||||||||||||||||||||||||
seq2  CAAGGAACATCTAGTTTCACAGAATTC  827


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