BAC Information

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BAC

Clone NameB6Ng01-271J23
Chromosome13 (Build37)
Map Location 34,066,146 - 34,229,641
singlet/doubletdoublet
Overlap geneNqo2, 4930482L21Rik, Ripk1, Bphl, Tubb2a, LOC100042686, Tubb2b
Upstream geneSerpinb6b, Serpinb9, Serpinb9b, Serpinb1b, LOC628301, Serpinb9c, Serpinb9d, Serpinb9e, Serpinb9f, OTTMUSG00000000724, Serpinb9g, LOC100041370, EG619715, LOC382743, OTTMUSG00000000712, LOC193403, Vmn2r-ps94, OTTMUSG00000000720, Serpinb6c, Serpinb6a
Downstream gene2310047M15Rik, 3110004L20Rik, LOC620132, EG666666, 1300014I06Rik, D0H6S2654E, EG432746, LOC666677, Prpf4b, 4933417A18Rik, LOC666697, 1810022C23Rik, Peci
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271J23.bB6Ng01-271J23.g
ACCGA073654GA073655
length1,0021,126
definitionB6Ng01-271J23.b B6Ng01-271J23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,066,146 - 34,066,906)(34,228,538 - 34,229,641)
sequence
gaattctgtgatgctgcttcttgctcttcaagagactcataataatcttt
catttgctctgcattccctccttctttcctttaccctccaccttccttcc
tcacgtttattgagatctttttttttaaaggtttatatttatttatttag
tcctgctaccacattatagtgtaagtccatttaaaaaatgttttacatat
ttatacatatatattttaggaagcttctatgacagtaagttttcataaca
ctattttttattgcttttatttttcacagtctagttgttgcccccctcct
ggtccatcctcgcacagttcctcatcccattcctcctccccctgtctcca
agaagatgtttccttttttttattaggtattttctttatatacatttcaa
atgctatcccgaaagttccccataccctcccctccgccctgctcctctac
ccacccactcctgcttcctggccttggcattctcctgtactggggcatat
aaagtttgcaataccaacactaggccatcgtctgctacatatgcagctag
agacatgagctctgggggtactggttagttcatattgttgttgaacctat
ggggttgcagaccccttcagctccttgggtgctttctctagcttctccat
tgagggccctgtgttccatctaataaaatgactgtgagcatccacttctg
tatttgccaggcactggcacagcctcatacgagacagctataacagggtc
ccttcagcaaaatctttctggcatatgcaatagtgtctgggtttggtggc
tgattatgggatgaatcccccggtggggtagtctctggatagtctatcct
ttcatcttaactccaaactttgtctctgtaactcctttcatgggtatttt
tgttccctattctaaggagaaatgaagtatccacccatttggtcttccct
cttcttgaatttcttgtgtttggaatttgtatcttgggtgttctaatgtt
ct
gaattctgggaacaaaaatgttagagaggcctgggaacccactatgttga
ggactccataaatatccttccccgttggacactggcaaaaggccagggtc
tccaacacaagttacttttcccattcatcattgtaagagggaagagcttt
cttgagtttattgctcaagtttcctgagcccatgttctaggcacattttg
atccagacaaccgagaaccacactggggcccatccatcaaccttttgtgc
taccacacttccatagcaaaagagtgacttagaactgtgacacatcactt
ctgtggatgatgggcagagtttatgtatccttcccaccagtagcagagaa
ggtagaaagactctctctgaaagtctctggtaaaattgtattcatttcat
tcccaggcttgctacatcattgcatagctcccagaattgggtctcactgg
ggcattgagggaatgaagaagacagactgatgaaatgacagacatgtaga
cagaagagttgggatcaggtggactggatttcttgatggactagctgcag
caacctagaaacacattgtgcttgttatatacagttgaagacagaggtgg
ggtaattgcatattagctgaatctggaggcaggatttatgatatacagct
gaatcaagaaggcaggttttgctcatctctgtaggtgtagtctctgtagg
ggagcagtcttcaggcaattaacactgtgtggtggcaaaagctttgggag
atattttctgcacacattgccaacatccacacatggaccagggggaaagt
ctggcatttccctgagcgtcacccaggtaagacttttgccactcccatgg
gacttgagacactgggggtccttgacatggccagctcatgtctacacaca
tccactcaggacttcacatgcttcagggtttcctccactccccacacaag
gctggcgtgtttcactgtctgcctaacagggaggaacaaacggagcagct
ggtcgtggagttcttgccatggaggcacaaattctgggggtttgcaatgg
tctcttctgttgggcataaacaaatcgggttttcttcacgttccttgctt
gtaagggcttgcgtgggctctgcagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_34066146_34066906
seq2: B6Ng01-271J23.b_46_806

seq1  GAATTCTGTGATGCTGCTTCTTGCTCTTCAAGAGACTCATAATAATCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGATGCTGCTTCTTGCTCTTCAAGAGACTCATAATAATCTTT  50

seq1  CATTTGCTCTGCATTCCCTCCTTCTTTCCTTTACCCTCCACCTTCCTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCTCTGCATTCCCTCCTTCTTTCCTTTACCCTCCACCTTCCTTCC  100

seq1  TCACGTTTATTGAGATCTTTTTTTTTAAAGGTTTATATTTATTTATTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGTTTATTGAGATCTTTTTTTTTAAAGGTTTATATTTATTTATTTAG  150

seq1  TCCTGCTACCACATTATAGTGTAAGTCCATTTAAAAAATGTTTTACATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTACCACATTATAGTGTAAGTCCATTTAAAAAATGTTTTACATAT  200

seq1  TTATACATATATATTTTAGGAAGCTTCTATGACAGTAAGTTTTCATAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACATATATATTTTAGGAAGCTTCTATGACAGTAAGTTTTCATAACA  250

seq1  CTATTTTTTATTGCTTTTATTTTTCACAGTCTAGTTGTTGCCCCCCTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTTTATTGCTTTTATTTTTCACAGTCTAGTTGTTGCCCCCCTCCT  300

seq1  GGTCCATCCTCGCACAGTTCCTCATCCCATTCCTCCTCCCCCTGTCTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCATCCTCGCACAGTTCCTCATCCCATTCCTCCTCCCCCTGTCTCCA  350

seq1  AGAAGATGTTTCCTTTTTTTTATTAGGTATTTTCTTTATATACATTTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATGTTTCCTTTTTTTTATTAGGTATTTTCTTTATATACATTTCAA  400

seq1  ATGCTATCCCGAAAGTTCCCCATACCCTCCCCTCCGCCCTGCTCCTCTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATCCCGAAAGTTCCCCATACCCTCCCCTCCGCCCTGCTCCTCTAC  450

seq1  CCACCCACTCCTGCTTCCTGGCCTTGGCATTCTCCTGTACTGGGGCATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCACTCCTGCTTCCTGGCCTTGGCATTCTCCTGTACTGGGGCATAT  500

seq1  AAAGTTTGCAATACCAACACTAGGCCATCGTCTGCTACATATGCAGCTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTGCAATACCAACACTAGGCCATCGTCTGCTACATATGCAGCTAG  550

seq1  AGACATGAGCTCTGGGGGTACTGGTTAGTTCATATTGTTGTTGAACCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGAGCTCTGGGGGTACTGGTTAGTTCATATTGTTGTTGAACCTAT  600

seq1  GGGGTTGCAGACCCCTTCAGCTCCTTGGGTGCTTTCTCTAGCTTCTCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTGCAGACCCCTTCAGCTCCTTGGGTGCTTTCTCTAGCTTCTCCAT  650

seq1  TGAGGGCCCTGTGTTCCATCTAATAAAATGACTGTGAGCATCCACTTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGCCCTGTGTTCCATCTAATAAAATGACTGTGAGCATCCACTTCTG  700

seq1  TATTTGCCAGGCACTGGCACAGCCTCATACGAGACAGCTATAACAGGGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCCAGGCACTGGCACAGCCTCATACGAGACAGCTATAACAGGGTC  750

seq1  CCTTCAGCAAA  761
      |||||||||||
seq2  CCTTCAGCAAA  761

seq1: chr13_34228538_34229641
seq2: B6Ng01-271J23.g_70_1195 (reverse)

seq1  GCTGCAGAG-CCACGCA--GCCTTACAAGC-AGGGACGTGAAG-AAACCG  45
      ||||||||| |||||||   |||||||||| ||| |||||||| ||||| 
seq2  GCTGCAGAGCCCACGCAAGCCCTTACAAGCAAGGAACGTGAAGAAAACCC  50

seq1  GATTTG-TTATGGCCAACAG-AGAGA-CACTGCAAA-CCCCAGA--TTGT  89
      |||||| ||||| ||||||| ||||| || |||||| |||||||  ||||
seq2  GATTTGTTTATGCCCAACAGAAGAGACCATTGCAAACCCCCAGAATTTGT  100

seq1  GCCT-CATGGCAAGAAAACTCACGA-CAGCTGCTCCG-TTGTT-CTCCCT  135
      |||| |||||||||||  | ||||| ||||||||||| ||||| ||||||
seq2  GCCTCCATGGCAAGAACTC-CACGACCAGCTGCTCCGTTTGTTCCTCCCT  149

seq1  GT--AGCAGACAGTGAACCACGCCAGCC-TGTGTGGGGAGTGGAGGAAAC  182
      ||   |||||||||||| |||||||||| |||||||||||||||||||||
seq2  GTTAGGCAGACAGTGAAACACGCCAGCCTTGTGTGGGGAGTGGAGGAAAC  199

seq1  CCTG-AGCATGTGAAGTCCTGAGTGGATGTGTGTAGACATGAGCTGGCCA  231
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGCATGTGAAGTCCTGAGTGGATGTGTGTAGACATGAGCTGGCCA  249

seq1  TGTCAAGGA-CCCCAGTGTCTC-AGTCCCATGGGAGTGGC-AAAGTCTTA  278
      ||||||||| |||||||||||| ||||||||||||||||| |||||||||
seq2  TGTCAAGGACCCCCAGTGTCTCAAGTCCCATGGGAGTGGCAAAAGTCTTA  299

seq1  CCTGGGTGACGCTCAGGGAAATGCCAGACTTTCCCCCTGGTCCATGTGTG  328
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTGACGCTCAGGGAAATGCCAGACTTTCCCCCTGGTCCATGTGTG  349

seq1  GATGTTGGCAATGTGTGCAGAAAATATCTCCCAAAGC-TTTGCCACCACA  377
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GATGTTGGCAATGTGTGCAGAAAATATCTCCCAAAGCTTTTGCCACCACA  399

seq1  CAGTGTTAATTGCCTGAAGACTGCTCCCCTACAGAGACTACACCTACAGA  427
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTAATTGCCTGAAGACTGCTCCCCTACAGAGACTACACCTACAGA  449

seq1  GATGAGCAAAACCTGCCTTCTTGATTCAGCTGTATATCATAAATCCTGCC  477
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGCAAAACCTGCCTTCTTGATTCAGCTGTATATCATAAATCCTGCC  499

seq1  TCCAGATTCAGCTAATATGCAATTACCCCACCTCTGTCTTCAACTGTATA  527
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGATTCAGCTAATATGCAATTACCCCACCTCTGTCTTCAACTGTATA  549

seq1  TAACAAGCACAATGTGTTTCTAGGTTGCTGCAGCTAGTCCATCAAGAAAT  577
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAGCACAATGTGTTTCTAGGTTGCTGCAGCTAGTCCATCAAGAAAT  599

seq1  CCAGTCCACCTGATCCCAACTCTTCTGTCTACATGTCTGTCATTTCATCA  627
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCCACCTGATCCCAACTCTTCTGTCTACATGTCTGTCATTTCATCA  649

seq1  GTCTGTCTTCTTCATTCCCTCAATGCCCCAGTGAGACCCAATTCTGGGAG  677
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTCTTCTTCATTCCCTCAATGCCCCAGTGAGACCCAATTCTGGGAG  699

seq1  CTATGCAATGATGTAGCAAGCCTGGGAATGAAATGAATACAATTTTACCA  727
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCAATGATGTAGCAAGCCTGGGAATGAAATGAATACAATTTTACCA  749

seq1  GAGACTTTCAGAGAGAGTCTTTCTACCTTCTCTGCTACTGGTGGGAAGGA  777
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTTTCAGAGAGAGTCTTTCTACCTTCTCTGCTACTGGTGGGAAGGA  799

seq1  TACATAAACTCTGCCCATCATCCACAGAAGTGATGTGTCACAGTTCTAAG  827
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAAACTCTGCCCATCATCCACAGAAGTGATGTGTCACAGTTCTAAG  849

seq1  TCACTCTTTTGCTATGGAAGTGTGGTAGCACAAAAGGTTGATGGATGGGC  877
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCTTTTGCTATGGAAGTGTGGTAGCACAAAAGGTTGATGGATGGGC  899

seq1  CCCAGTGTGGTTCTCGGTTGTCTGGATCAAAATGTGCCTAGAACATGGGC  927
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTGTGGTTCTCGGTTGTCTGGATCAAAATGTGCCTAGAACATGGGC  949

seq1  TCAGGAAACTTGAGCAATAAACTCAAGAAAGCTCTTCCCTCTTACAATGA  977
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAACTTGAGCAATAAACTCAAGAAAGCTCTTCCCTCTTACAATGA  999

seq1  TGAATGGGAAAAGTAACTTGTGTTGGAGACCCTGGCCTTTTGCCAGTGTC  1027
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGGGAAAAGTAACTTGTGTTGGAGACCCTGGCCTTTTGCCAGTGTC  1049

seq1  CAACGGGGAAGGATATTTATGGAGTCCTCAACATAGTGGGTTCCCAGGCC  1077
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGGGGAAGGATATTTATGGAGTCCTCAACATAGTGGGTTCCCAGGCC  1099

seq1  TCTCTAACATTTTTGTTCCCAGAATTC  1104
      |||||||||||||||||||||||||||
seq2  TCTCTAACATTTTTGTTCCCAGAATTC  1126