BAC Information

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BAC

Clone NameB6Ng01-272H16
Chromosome13 (Build37)
Map Location 29,381,288 - 29,504,147
singlet/doubletdoublet
Overlap geneCdkal1
Upstream geneLOC100042393, LOC100042399, Ppia-ps13_297.1, LOC626683, 2610307P16Rik, Sox4, LOC100041135
Downstream geneE2f3, Mboat1, Agtr1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272H16.bB6Ng01-272H16.g
ACCGA074295GA074296
length1,1711,026
definitionB6Ng01-272H16.b B6Ng01-272H16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,502,982 - 29,504,147)(29,381,288 - 29,382,319)
sequence
gaattcctgggatcagatggcagagatgcagactaataaaagggagtgtc
cctaatacaatataagtaaacaggggaggaggagaagctgcccatcaaag
cagccgtggcagccatgagttttccttgggagtggcataaaacttaccat
caagccggtcaacttcccattacaaacactggctgcctatggctgggccc
actctgtccgactcccaggctcatgtgccgggaccttgccttgcttctca
tggtcttttctcagttttatcttgctgctttgttaccttcccagtctttc
ttcttctgccttcccctcccttccctcattttcccttctcctcttctcct
gtccctttcatcattcattcctcctttttatttttctttctctctttctt
tgtttttttttctctgtgtggtgctagggactaagctcaggaccgtgtac
atgctgggcaagcactctgacaaggactgtgtccccggcccttctttctt
tgctgtttgtgtttcttctatcacgttaagcattgacttctatatgaatg
aatagagtctcgcttttgtttcaagtgcaagtgtgagtagatggtttatg
gccatctgtattttgtcatgcaaaattcagtgacttggccataatattct
tcattctccctctctccctggtctcctccttcttctcttcctccccatcc
tttctttccacttctccctttccctccccccctttcttgcaaaacatcct
gttttcctttcattcacagataaccacaacccaaagctttttatgtctct
aacatttaacagacttgatttcatttcgaatatttttgtaatccagattt
gctaacaccctaggcagcatctgtagattggaaaaagcaagtactttcat
ccagctggccctggccagcacgttccacgctcgaactgagtacttagggg
aacatagggcacatttcctaatcctttctgacccacacagttgtcatctg
tgaaagacggaaaatactgtctttcttttatgacaaatgaagctgcaaac
actgattgtagaaaataactggaaatcctctatccatttcctttcccttc
ctttcataataaatatattctagtctagaactttgacaaaactaatttta
tcaaatataaaaaatacattt

gaattccaggacagccagggctacacagagaaactctgtctcaaaaaacc
aaactaaaccaaaccaaaccaaaactaaacaaaacaagacaagacataca
acccaaaggagcacacaaatctcctaacaagaaagttaattattcataga
ctatccccattgttagctggagatatccctaggtagagaagctgtcatgc
caccctgcctacaataccctcatcctcctacaccccaccattaaaatatc
aaagtccacttgtctgttgatcaaactccttcgctgagaggagaggaggt
aaaaatgccaagagatagaaaactcatcacataaactttggcaaagttac
atcccaaagatcaatgttttacaagtcaatagaggctaaattaacctctg
cctttgtctttgggtagcttttcctgtctcctgtctgtcagtggacccaa
ataggatggaagcccaagccctgggtggtaagatcaagcttggttcccaa
cccagtatctgtgatacttctctgtggccttgacttgtgcactggaattg
cctgggaaatgttaacagctattggtgatgggtcagcccctcctgataca
atggttctggaaccttactacatatgaagatcatctgaagaaacccagac
atggagtaccaccttggcaggtgttaacaggggatgaggagtttcagggt
catcataacaaaagttcaaggccagtgtgggtgacataaaatactgtctc
aaccaagcatctccaatcacttcccaaaacagaatcatttagagagcttc
tacaactcccaaagccctggctcaacctgagacctctccagggtatattc
tctctcagggtaggcacccaggcatccctaccctccagtggtgctaccga
tgctgatgcagcctgctgcgtagagggtgataagattcctaaagcattcc
tgggtgaggtggctgccctgggggcagccttgaacatgaacggccaagat
gctggaggaccttctctcttgagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_29502982_29504147
seq2: B6Ng01-272H16.b_49_1219 (reverse)

seq1  AAATGTA-TTTTTATATTTGATAAATATAGTTTTGTCAATG-TCTAGACT  48
      ||||||| |||||||||||||||||  |||||||||||| | ||||||||
seq2  AAATGTATTTTTTATATTTGATAAAATTAGTTTTGTCAAAGTTCTAGACT  50

seq1  AG-ATATA-TTATATAGAAAGGAAGGGAAAGGAAATGGATAGGAGATTTT  96
      || ||||| ||||   ||||||||||||||||||||||||||  ||||| 
seq2  AGAATATATTTATTATGAAAGGAAGGGAAAGGAAATGGATAGAGGATTT-  99

seq1  CCAAGTTA-TTTCTACAAATCAGTTGTTTGCAGCTTCATTTGTCATAAAA  145
       | ||||| ||||||| |||||| ||||||||||||||||||||||||||
seq2  -CCAGTTATTTTCTAC-AATCAG-TGTTTGCAGCTTCATTTGTCATAAAA  146

seq1  G-AAGACAGTATTTTCCGTCTTTCACAGATGACAACTGTGTGGGTCAG-A  193
      | |||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GAAAGACAGTATTTTCCGTCTTTCACAGATGACAACTGTGTGGGTCAGAA  196

seq1  AGGATTAGGAAATGTGCCCTATGTTCCCCTAAGTACTCAGTTCGAGCGTG  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTAGGAAATGTGCCCTATGTTCCCCTAAGTACTCAGTTCGAGCGTG  246

seq1  G-ACGTGCCGGCCAGGGCCAGCTGGATG-AAGTACTTGCTTTTTCCAATC  291
      | |||||| ||||||||||||||||||| |||||||||||||||||||||
seq2  GAACGTGCTGGCCAGGGCCAGCTGGATGAAAGTACTTGCTTTTTCCAATC  296

seq1  TACAGATGCTGCCTAGGGTGTTAGCAAATCTGGATTACAAAAATATTCGA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATGCTGCCTAGGGTGTTAGCAAATCTGGATTACAAAAATATTCGA  346

seq1  AATGAAATCAAGTCTGTTAAATGTTAGAGACATAAAAAGCTTTGGGTTGT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAATCAAGTCTGTTAAATGTTAGAGACATAAAAAGCTTTGGGTTGT  396

seq1  GGTTATCTGTGAATGAAAGGAAAACAGGATGTTTTGCAAGAAAGGGGGGG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATCTGTGAATGAAAGGAAAACAGGATGTTTTGCAAGAAAGGGGGGG  446

seq1  AGGGAAAGGGAGAAGTGGAAAGAAAGGATGGGGAGGAAGAGAAGAAGGAG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAGGGAGAAGTGGAAAGAAAGGATGGGGAGGAAGAGAAGAAGGAG  496

seq1  GAGACCAGGGAGAGAGGGAGAATGAAGAATATTATGGCCAAGTCACTGAA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCAGGGAGAGAGGGAGAATGAAGAATATTATGGCCAAGTCACTGAA  546

seq1  TTTTGCATGACAAAATACAGATGGCCATAAACCATCTACTCACACTTGCA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCATGACAAAATACAGATGGCCATAAACCATCTACTCACACTTGCA  596

seq1  CTTGAAACAAAAGCGAGACTCTATTCATTCATATAGAAGTCAATGCTTAA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAACAAAAGCGAGACTCTATTCATTCATATAGAAGTCAATGCTTAA  646

seq1  CGTGATAGAAGAAACACAAACAGCAAAGAAAGAAGGGCCGGGGACACAGT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGATAGAAGAAACACAAACAGCAAAGAAAGAAGGGCCGGGGACACAGT  696

seq1  CCTTGTCAGAGTGCTTGCCCAGCATGTACACGGTCCTGAGCTTAGTCCCT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTCAGAGTGCTTGCCCAGCATGTACACGGTCCTGAGCTTAGTCCCT  746

seq1  AGCACCACACAGAGAAAAAAAAACAAAGAAAGAGAGAAAGAAAAATAAAA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCACACAGAGAAAAAAAAACAAAGAAAGAGAGAAAGAAAAATAAAA  796

seq1  AGGAGGAATGAATGATGAAAGGGACAGGAGAAGAGGAGAAGGGAAAATGA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAATGAATGATGAAAGGGACAGGAGAAGAGGAGAAGGGAAAATGA  846

seq1  GGGAAGGGAGGGGAAGGCAGAAGAAGAAAGACTGGGAAGGTAACAAAGCA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGGAGGGGAAGGCAGAAGAAGAAAGACTGGGAAGGTAACAAAGCA  896

seq1  GCAAGATAAAACTGAGAAAAGACCATGAGAAGCAAGGCAAGGTCCCGGCA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGATAAAACTGAGAAAAGACCATGAGAAGCAAGGCAAGGTCCCGGCA  946

seq1  CATGAGCCTGGGAGTCGGACAGAGTGGGCCCAGCCATAGGCAGCCAGTGT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGCCTGGGAGTCGGACAGAGTGGGCCCAGCCATAGGCAGCCAGTGT  996

seq1  TTGTAATGGGAAGTTGACCGGCTTGATGGTAAGTTTTATGCCACTCCCAA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATGGGAAGTTGACCGGCTTGATGGTAAGTTTTATGCCACTCCCAA  1046

seq1  GGAAAACTCATGGCTGCCACGGCTGCTTTGATGGGCAGCTTCTCCTCCTC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACTCATGGCTGCCACGGCTGCTTTGATGGGCAGCTTCTCCTCCTC  1096

seq1  CCCTGTTTACTTATATTGTATTAGGGACACTCCCTTTTATTAGTCTGCAT  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTTTACTTATATTGTATTAGGGACACTCCCTTTTATTAGTCTGCAT  1146

seq1  CTCTGCCATCTGATCCCAGGAATTC  1166
      |||||||||||||||||||||||||
seq2  CTCTGCCATCTGATCCCAGGAATTC  1171


seq1: chr13_29381288_29382319
seq2: B6Ng01-272H16.g_63_1088

seq1  GAATTCCAGGACAGCCAGGGCTACACAGAGAAACTCTGTCTCAAAAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTACACAGAGAAACTCTGTCTCAAAAAACC  50

seq1  AAACTAAACCAAACCAAACCAAAACTAAACAAAACAAGACAAGACATACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAAACCAAACCAAACCAAAACTAAACAAAACAAGACAAGACATACA  100

seq1  ACCCAAAGGAGCACACAAATCTCCTAACAAGAAAGTTAATTATTCATAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAAGGAGCACACAAATCTCCTAACAAGAAAGTTAATTATTCATAGA  150

seq1  CTATCCCCATTGTTAGCTGGAGATATCCCTAGGTAGAGAAGCTGTCATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCCCATTGTTAGCTGGAGATATCCCTAGGTAGAGAAGCTGTCATGC  200

seq1  CACCCTGCCTACAATACCCTCATCCTCCTACACCCCACCATTAAAATATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTGCCTACAATACCCTCATCCTCCTACACCCCACCATTAAAATATC  250

seq1  AAAGTCCACTTGTCTGTTGATCAAACTCCTTCGCTGAGAGGAGAGGAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCCACTTGTCTGTTGATCAAACTCCTTCGCTGAGAGGAGAGGAGGT  300

seq1  AAAAATGCCAAGAGATAGAAAACTCATCACATAAACTTTGGCAAAGTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGCCAAGAGATAGAAAACTCATCACATAAACTTTGGCAAAGTTAC  350

seq1  ATCCCAAAGATCAATGTTTTACAAGTCAATAGAGGCTAAATTAACCTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAAAGATCAATGTTTTACAAGTCAATAGAGGCTAAATTAACCTCTG  400

seq1  CCTTTGTCTTTGGGTAGCTTTTCCTGTCTCCTGTCTGTCAGTGGACCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTCTTTGGGTAGCTTTTCCTGTCTCCTGTCTGTCAGTGGACCCAA  450

seq1  ATAGGATGGAAGCCCAAGCCCTGGGTGGTAAGATCAAGCTTGGTTCCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGATGGAAGCCCAAGCCCTGGGTGGTAAGATCAAGCTTGGTTCCCAA  500

seq1  CCCAGTATCTGTGATACTTCTCTGTGGCCTTGAC-TGTGCACTGGAATTG  549
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CCCAGTATCTGTGATACTTCTCTGTGGCCTTGACTTGTGCACTGGAATTG  550

seq1  CCTGGGAAATGTTAACAGCTATTGGTGATGGGTCAGCCCCTCCTGATACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGAAATGTTAACAGCTATTGGTGATGGGTCAGCCCCTCCTGATACA  600

seq1  ATGGTTCTGGAACCTTACTACATATGAAGATCATCTGAAGAAACCCAGAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATGGTTCTGGAACCTTACTACATATGAAGATCATCTGAAGAAACCCAGAC  650

seq1  ATGGAGTACCAACTTGGCAGGTGTTAACAGGGGATGAGGAGTTTCAGGGT  699
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGTACCACCTTGGCAGGTGTTAACAGGGGATGAGGAGTTTCAGGGT  700

seq1  CATCATAACAAAAGTTCAAGGCCAGTGTGGGTGACATAAAATACTGTCTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATAACAAAAGTTCAAGGCCAGTGTGGGTGACATAAAATACTGTCTC  750

seq1  AACCAAGCATCTCCAATCACTTCCCAAAACAGAATCATTTAGAGAGCTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGCATCTCCAATCACTTCCCAAAACAGAATCATTTAGAGAGCTTC  800

seq1  TACAACTCCCAAAGCCCTGGCTCAACCTGAGACCTCTCCAGGGTATATTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACTCCCAAAGCCCTGGCTCAACCTGAGACCTCTCCAGGGTATATTC  850

seq1  TCCTCTCCAGGGTAGGCACCCAGGCATCCCTACCCTCCAGT-GTGCTACC  898
      | |||| |||||||||||||||||||||||||||||||||| ||||||||
seq2  T-CTCT-CAGGGTAGGCACCCAGGCATCCCTACCCTCCAGTGGTGCTACC  898

seq1  GATGCTGATGCAAGCCTGCTGCGTAGA-GGTGATAAAGATTCCTAAAAGC  947
      ||||||||||| ||||||||||||||| |||||| ||||||||| |||||
seq2  GATGCTGATGC-AGCCTGCTGCGTAGAGGGTGAT-AAGATTCCT-AAAGC  945

seq1  ATCTCTTGGTGAGGT-GCTGCCCTGGGGGCAGCCCTGAACCATGGAACAG  996
      ||  || |||||||| |||||||||||||||||| |||| ||| |||| |
seq2  ATTCCTGGGTGAGGTGGCTGCCCTGGGGGCAGCCTTGAA-CAT-GAACGG  993

seq1  CACAAGAATGCTGGAGGACTTTCTCTTCTTGAGGGG  1032
      | |||| |||||||||||| ||||| ||||||||||
seq2  C-CAAG-ATGCTGGAGGACCTTCTC-TCTTGAGGGG  1026


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