BAC Information

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BAC

Clone NameB6Ng01-273E16
Chromosome13 (Build37)
Map Location 118,717,561 - 118,841,046
singlet/doubletdoublet
Overlap geneHcn1, LOC100041695, LOC674926
Upstream geneParp8, LOC668288, LOC623312, Emb, EG623365, LOC382807
Downstream geneMrps30, LOC668309, LOC100041278, Fgf10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273E16.bB6Ng01-273E16.g
ACCGA074903GA074904
length1,073288
definitionB6Ng01-273E16.b B6Ng01-273E16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,839,957 - 118,841,046)(118,717,561 - 118,717,847)
sequence
gggaattcagcataacgacacactattggcttattcaaacatcagcagaa
aaattacatgtacatgcaggttgtcagagttctgtgagttgttgactcag
ttcagatagccctgctatgtcctcacattcctctttatctttaaagttaa
gctgttcccaggaatgttttaactaaggggcatacctgggtttgtttttc
ttttttctcagccccaggcagcctctaggctcacaaacaaccagcaattt
ctgagtactttatatgacttacaggtcttgaaatttcatctttctttcac
tctctctctctccattccctacctttataccaagactttatttagcctac
atgtaaatgtgttattatctagtacgtggactaaaccttaggtatttaaa
ggaatggatttttaggaaataggtactgaaaaataaagtagctccaggct
tgcactgtctagaactcaacagtatggtaggatagcacatctgctcaatt
tcacctcttttcaggcatgttgcattcaaatagctccagttctgtgttgt
cactgaatcctaagcacagtgcagtttattactgtatgtccctgctggta
ggcacaaaggtccgagactaatcccacaaacccatctcaataacagcttt
ggaaacaaatggaaaaagtaaaggaaaagaaagaaaaagcagaggaaacc
atatctcaaaacagctataatttactttgtgagtgggaaaaatgtagaaa
ataaacttacataggctctgactctttcaactgccaccactggggattta
aaaatgtttctgcgtccaaatatagtgaacagatagataagatgctgtca
gcatatacgattttacttttaatcttgcaaactgggcctttttccagagg
cctcatagttttaaaatagtatacataggtaactaggaaaattaacttga
ctaaagaagaggaacacttttgaaagattcaaacagggaccaacacttac
tcaaaattcaagttaacctcctattatcttacagaatatggtaaatttgc
tcgcagaaggtatggtgtgtgtg
catatttttacaagatagatattctatttattatttaaaatagttatgga
gactactatcaatataatccatatacttaaaagttctttcaaaacacctt
tcaactcttactatgtttaatggcaaaactgtagattgtttcttcccaat
agttttacaaatgacaattcctgtatagatcctcattttagtatcaaatt
tcaccactattgaaaaagaaagaaaaatgaaataccctgtatatcattta
ctgggtcctctcccttttagagcctatagcaatcactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_118839957_118841046
seq2: B6Ng01-273E16.b_46_1117 (reverse)

seq1  CACACACACACACACACACACACACACACACATACCTTCTGCGAGCAAAT  50
                          ||||||||| ||||||||||||||||||||
seq2  --------------------CACACACAC-CATACCTTCTGCGAGCAAAT  29

seq1  TTACCATA-TCTGTAAGAT-ATAGGAGGTTAACTTGAATTTTGAGTAAGT  98
      |||||||| |||||||||| ||||||||||||||||||||||||||||||
seq2  TTACCATATTCTGTAAGATAATAGGAGGTTAACTTGAATTTTGAGTAAGT  79

seq1  GTTGGTCCCTGTTTGAATCTTTCAAAAGTGTTCCTCTTC-TTAGTCAAGT  147
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTTGGTCCCTGTTTGAATCTTTCAAAAGTGTTCCTCTTCTTTAGTCAAGT  129

seq1  TAATTTTCCTAGTTACCTATGTATACTATTTTAAAACTATGAGGCCTCTG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTCCTAGTTACCTATGTATACTATTTTAAAACTATGAGGCCTCTG  179

seq1  GAAAAAGGCCCAGTTTGCAAGATTAAAAGTAAAATCGTATATGCTGACAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGGCCCAGTTTGCAAGATTAAAAGTAAAATCGTATATGCTGACAG  229

seq1  CATCTTATCTATCTGTTCACTATATTTGGACGCAGAAACATTTTTAAATC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTATCTATCTGTTCACTATATTTGGACGCAGAAACATTTTTAAATC  279

seq1  CCCAGTGGTGGCAGTTGAAAGAGTCAGAGCCTATGTAAGTTTATTTTCTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTGGTGGCAGTTGAAAGAGTCAGAGCCTATGTAAGTTTATTTTCTA  329

seq1  CATTTTTCCCACTCACAAAGTAAATTATAGCTGTTTTGAGATATGGTTTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTCCCACTCACAAAGTAAATTATAGCTGTTTTGAGATATGGTTTC  379

seq1  CTCTGCTTTTTCTTTCTTTTCCTTTACTTTTTCCATTTGTTTCCAAAGCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTTTTTCTTTCTTTTCCTTTACTTTTTCCATTTGTTTCCAAAGCT  429

seq1  GTTATTGAGATGGGTTTGTGGGATTAGTCTCGGACCTTTGTGCCTACCAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTGAGATGGGTTTGTGGGATTAGTCTCGGACCTTTGTGCCTACCAG  479

seq1  CAGGGACATACAGTAATAAACTGCACTGTGCTTAGGATTCAGTGACAACA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGACATACAGTAATAAACTGCACTGTGCTTAGGATTCAGTGACAACA  529

seq1  CAGAACTGGAGCTATTTGAATGCAACATGCCTGAAAAGAGGTGAAATTGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTGGAGCTATTTGAATGCAACATGCCTGAAAAGAGGTGAAATTGA  579

seq1  GCAGATGTGCTATCCTACCATACTGTTGAGTTCTAGACAGTGCAAGCCTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATGTGCTATCCTACCATACTGTTGAGTTCTAGACAGTGCAAGCCTG  629

seq1  GAGCTACTTTATTTTTCAGTACCTATTTCCTAAAAATCCATTCCTTTAAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTACTTTATTTTTCAGTACCTATTTCCTAAAAATCCATTCCTTTAAA  679

seq1  TACCTAAGGTTTAGTCCACGTACTAGATAATAACACATTTACATGTAGGC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTAAGGTTTAGTCCACGTACTAGATAATAACACATTTACATGTAGGC  729

seq1  TAAATAAAGTCTTGGTATAAAGGTAGGGAATGGAGAGAGAGAGAGTGAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAAGTCTTGGTATAAAGGTAGGGAATGGAGAGAGAGAGAGTGAAA  779

seq1  GAAAGATGAAATTTCAAGACCTGTAAGTCATATAAAGTACTCAGAAATTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATGAAATTTCAAGACCTGTAAGTCATATAAAGTACTCAGAAATTG  829

seq1  CTGGTTGTTTGTGAGCCTAGAGGCTGCCTGGGGCTGAGAAAAAAGAAAAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTGTTTGTGAGCCTAGAGGCTGCCTGGGGCTGAGAAAAAAGAAAAA  879

seq1  CAAACCCAGGTATGCCCCTTAGTTAAAACATTCCTGGGAACAGCTTAACT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCCAGGTATGCCCCTTAGTTAAAACATTCCTGGGAACAGCTTAACT  929

seq1  TTAAAGATAAAGAGGAATGTGAGGACATAGCAGGGCTATCTGAACTGAGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGATAAAGAGGAATGTGAGGACATAGCAGGGCTATCTGAACTGAGT  979

seq1  CAACAACTCACAGAACTCTGACAACCTGCATGTACATGTAATTTTTCTGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACTCACAGAACTCTGACAACCTGCATGTACATGTAATTTTTCTGC  1029

seq1  TGATGTTTGAATAAGCCAATAGTGTGTCGTTATGCTGAATTCC  1090
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTTGAATAAGCCAATAGTGTGTCGTTATGCTGAATTCC  1072

seq1: chr13_118717561_118717847
seq2: B6Ng01-273E16.g_73_359

seq1  CATATTTTTACAAGATAGATATTCTATTTATTATTTAAAATAGTTATGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTTTACAAGATAGATATTCTATTTATTATTTAAAATAGTTATGGA  50

seq1  GACTACTATCAATATAATCCATATACTTAAAAGTTCTTTCAAAACACCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACTATCAATATAATCCATATACTTAAAAGTTCTTTCAAAACACCTT  100

seq1  TCAACTCTTACTATGTTTAATGGCAAAACTGTAGATTGTTTCTTCCCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTCTTACTATGTTTAATGGCAAAACTGTAGATTGTTTCTTCCCAAT  150

seq1  AGTTTTACAGATGACAATTCCTGTATAGATCCTCATTTTAGTATCAAATT  200
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTACAAATGACAATTCCTGTATAGATCCTCATTTTAGTATCAAATT  200

seq1  TCACCACTATTGAAAAAGAAAGAAAAATGAAATACCCTGTATATCATTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCACTATTGAAAAAGAAAGAAAAATGAAATACCCTGTATATCATTTA  250

seq1  CTGGGTCCTCTCCCTTTTAGAGCCTATAGCAATCACT  287
      |||||||||||||||||||||||||||||||||||||
seq2  CTGGGTCCTCTCCCTTTTAGAGCCTATAGCAATCACT  287