BAC Information

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BAC

Clone NameB6Ng01-273F21
Chromosome13 (Build37)
Map Location 62,639,957 - 62,787,077
singlet/doubletdoublet
Overlap gene6720457D02Rik, LOC100041493, LOC630857, EG630978
Upstream geneCtsm, Cts3, EG665401, LOC624140, EG623505, LOC665415, LOC673332, BC052688, EG638502, LOC100041382, EG633250, EG624180, LOC100041420, LOC665444, EG630579, EG630594, LOC665455, LOC100041430, LOC100041962, LOC100041437, LOC100041979, LOC100041986, 8430426H19Rik, LOC100041455, EG665503
Downstream geneEG435366, LOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524, 2010111I01Rik, Fancc, Ptch1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273F21.bB6Ng01-273F21.g
ACCGA074959GA074960
length1,0731,137
definitionB6Ng01-273F21.b B6Ng01-273F21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,786,012 - 62,787,077)(62,639,957 - 62,641,086)
sequence
gaattctgttacatgctgaagaccagctgagacatataggcactactgtt
ttcttcaactctccattggtacagtcattgatttactagtggggcctcat
tctgtgagccattctgatctctccactttctgcatactcatagagattca
tgctctgaattctgttcatctggaaaacctttactaatacagatatgttt
tttcaccttcccacgtaggaaaccgtgctggctaacaatagtgctccata
atgaatggcatccatcccctgcttttctcccagggttgtctggagtagca
attgcttattagctgcggttttcctgatgtcagtgtaaaacgagagaagc
acattttgtgtcctaaaatctctctttaattgtaaatattcttgaaacct
atagttcactctgctccaagttgaataatgtactgtgcaaggtgtggctc
ttgtttccttggaggagcagggggcggagcgaggaggaggagaaccagcg
gcggccttggaggagcaggaagaagaaattcctgctgagttctggatgac
tgaaagatagacttttggaggacaggactgaaagaaagtcttgcagatct
gaaaagggtcagctcctagataagaaatccaagctgggaagccttatgct
gtgtgtcttcagcgcactctaaccctaagggaggtggtcatgtcaatcaa
gactcactagccaatcagggcctctggataggcccgccaatagaagtaga
ggcgtgttcttccgtgtgccttgtgctctctgttcctctccgttgcgagc
aggctgaaagattgatctgatttgttttcatctctgctgacagggggcct
tagggaattgccagcgatctacaacgtggcgacatggtgagcgtgtgacc
actgcccttaacccggaaggagcaaggagttaagcagctggagtcggggt
gatgggatgcagggaccagccctgactgttcttggttcctcttcagcagc
ggagggggaagtgtctgaggtgacaggacttggttctttagggatgtttt
aagggtttgcttgtttaagtata
gaattcaaacgagtcagcgtgtggttctttaaaaaatgaaatttataaat
taatgccaaaaatggactttgggggaatatatataacgcacaagtatact
ggcactgcaggtcattccctggcagaggcaatggcattaataaaatactt
tttgatgttgtccctgtgtggactggtagttgctaagtcctgtaacctga
cacacacagctgcaactaatgaatggcctgtgtctcaaaaaatctgagct
gacttaaccatgtcaatgagcatcactcaaatccacataggacagtaccc
taactggaaattcagtattcacatgatcaccacataatacagtaccctaa
ctggaaattcagtattcattggaataacctaaatatttcaaattgtatag
tgtaaatatttcaaattgtacacccaccagtcttgtgtgtttatattaaa
atgtacaaattaacaaaggctaagaaatcacaaaatcacacaacctgtgc
aactcaggtccttcttcatattggtgagccctgtagctgagtgccttaaa
cttgacttagtctgagatctagctattgcctactctgttttactctgcac
tgtacaaaggacattgctcctcctgttctgttctgagggcagaaacaatg
cttcatgcaaatcctttccctgttactgcaaagcacagttcattcacgga
gccaaatgggtaacattaaaactctgttgtgctactaccctttaacttaa
gaatacagaaactttaatcaagaggaaagcaaggtcattgccctgggaaa
caacagactgggatcagggccctgtaaagcaatatacctcttgtcaggaa
aaatgtgccagaaaggctgaaaatccatctgttctagaattagtatgcct
tccctgggagggaaaaactcaacacacaattcaagattaattaagaaaaa
aaaaaaaatctacctttggctggtgatttctggcctggctagctagtctg
ctctcctggaagaaacaatatcctggaggcatccagggagatctgccttc
acttaggcatctgacaccacagctaggacctccagggagatctggctgca
cacaggcacaattgggagcaacgtggatcacagcttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_62786012_62787077
seq2: B6Ng01-273F21.b_44_1115 (reverse)

seq1  ATAC-TAAAC-AGC-AACCCT--AAACATCCCTAAAG-ACCAAGTCTTGT  44
      |||| ||||| ||| ||||||  |||||||||||||| |||||||| |||
seq2  ATACTTAAACAAGCAAACCCTTAAAACATCCCTAAAGAACCAAGTCCTGT  50

seq1  CACCTCAGACACTTCCCCCTCCGCTGCCTGAAGAGGAACCAAGAACAGTC  94
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CACCTCAGACACTTCCCCCTCCGCTG-CTGAAGAGGAACCAAGAACAGTC  99

seq1  AGGGCTGGTCCCCTGCATCCCATCACCCCGACTCCAGCTGCTTAACTCCC  144
      ||||||||| ||||||||||||||||||||||||||||||||||||||| 
seq2  AGGGCTGGT-CCCTGCATCCCATCACCCCGACTCCAGCTGCTTAACTCCT  148

seq1  TGCTCCTTCC-GGTTAAGGGCAGTGGTCACACGCTCACCATGTCGCCACG  193
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTTCCGGGTTAAGGGCAGTGGTCACACGCTCACCATGTCGCCACG  198

seq1  TTGTAGATCGCTGGCAATTCCCTAAGG-CCCCTGTCAGCAGAGATGAAAA  242
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTGTAGATCGCTGGCAATTCCCTAAGGCCCCCTGTCAGCAGAGATGAAAA  248

seq1  CAAATCAGATCAATCTTTCAGCCTGCTCGCAACGGAGAGGAACAGAGAGC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCAGATCAATCTTTCAGCCTGCTCGCAACGGAGAGGAACAGAGAGC  298

seq1  ACAAGGCACACGGAAGAACACGCCTCTACTTCTATTGGCGGGCCTATCCA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGCACACGGAAGAACACGCCTCTACTTCTATTGGCGGGCCTATCCA  348

seq1  GAGGCCCTGATTGGCTAGTGAGTCTTGATTGACATGACCACCTCCCTTAG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCCTGATTGGCTAGTGAGTCTTGATTGACATGACCACCTCCCTTAG  398

seq1  GGTTAGAGTGCGCTGAAGACACACAGCATAAGGCTTCCCAGCTTGGATTT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGAGTGCGCTGAAGACACACAGCATAAGGCTTCCCAGCTTGGATTT  448

seq1  CTTATCTAGGAGCTGACCCTTTTCAGATCTGCAAGACTTTCTTTCAGTCC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTAGGAGCTGACCCTTTTCAGATCTGCAAGACTTTCTTTCAGTCC  498

seq1  TGTCCTCCAAAAGTCTATCTTTCAGTCATCCAGAACTCAGCAGGAATTTC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCCAAAAGTCTATCTTTCAGTCATCCAGAACTCAGCAGGAATTTC  548

seq1  TTCTTCCTGCTCCTCCAAGGCCGCCGCTGGTTCTCCTCCTCCTCGCTCCG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCTGCTCCTCCAAGGCCGCCGCTGGTTCTCCTCCTCCTCGCTCCG  598

seq1  CCCCCTGCTCCTCCAAGGAAACAAGAGCCACACCTTGCACAGTACATTAT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTGCTCCTCCAAGGAAACAAGAGCCACACCTTGCACAGTACATTAT  648

seq1  TCAACTTGGAGCAGAGTGAACTATAGGTTTCAAGAATATTTACAATTAAA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTTGGAGCAGAGTGAACTATAGGTTTCAAGAATATTTACAATTAAA  698

seq1  GAGAGATTTTAGGACACAAAATGTGCTTCTCTCGTTTTACACTGACATCA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATTTTAGGACACAAAATGTGCTTCTCTCGTTTTACACTGACATCA  748

seq1  GGAAAACCGCAGCTAATAAGCAATTGCTACTCCAGACAACCCTGGGAGAA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACCGCAGCTAATAAGCAATTGCTACTCCAGACAACCCTGGGAGAA  798

seq1  AAGCAGGGGATGGATGCCATTCATTATGGAGCACTATTGTTAGCCAGCAC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGGGATGGATGCCATTCATTATGGAGCACTATTGTTAGCCAGCAC  848

seq1  GGTTTCCTACGTGGGAAGGTGAAAAAACATATCTGTATTAGTAAAGGTTT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCCTACGTGGGAAGGTGAAAAAACATATCTGTATTAGTAAAGGTTT  898

seq1  TCCAGATGAACAGAATTCAGAGCATGAATCTCTATGAGTATGCAGAAAGT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGATGAACAGAATTCAGAGCATGAATCTCTATGAGTATGCAGAAAGT  948

seq1  GGAGAGATCAGAATGGCTCACAGAATGAGGCCCCACTAGTAAATCAATGA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGATCAGAATGGCTCACAGAATGAGGCCCCACTAGTAAATCAATGA  998

seq1  CTGTACCAATGGAGAGTTGAAGAAAACAGTAGTGCCTATATGTCTCAGCT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACCAATGGAGAGTTGAAGAAAACAGTAGTGCCTATATGTCTCAGCT  1048

seq1  GGTCTTCAGCATGTAACAGAATTC  1066
      ||||||||||||||||||||||||
seq2  GGTCTTCAGCATGTAACAGAATTC  1072

seq1: chr13_62639957_62641086
seq2: B6Ng01-273F21.g_66_1202

seq1  GAATTCAAACGAGTCAGCGTGTGGTTCTTTAAAAAATGAAATTTATAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACGAGTCAGCGTGTGGTTCTTTAAAAAATGAAATTTATAAAT  50

seq1  TAATGCCAAAAATGGACTTTGGGGGAATATATATAACGCACAAGTATACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCCAAAAATGGACTTTGGGGGAATATATATAACGCACAAGTATACT  100

seq1  GGCACTGCAGGTCATTCCCTGGCAGAGGCAATGGCATTAATAAAATACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTGCAGGTCATTCCCTGGCAGAGGCAATGGCATTAATAAAATACTT  150

seq1  TTTGATGTTGTCCCTGTGTGGACTGGTAGTTGCTAAGTCCTGTAACCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGTTGTCCCTGTGTGGACTGGTAGTTGCTAAGTCCTGTAACCTGA  200

seq1  CACACACAGCTGCAACTAATGAATGGCCTGTGTCTCAAAAAATCTGAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACAGCTGCAACTAATGAATGGCCTGTGTCTCAAAAAATCTGAGCT  250

seq1  GACTTAACCATGTCAATGAGCATCACTCAAATCCACATAGGACAGTACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAACCATGTCAATGAGCATCACTCAAATCCACATAGGACAGTACCC  300

seq1  TAACTGGAAATTCAGTATTCACATGATCACCACATAATACAGTACCCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGGAAATTCAGTATTCACATGATCACCACATAATACAGTACCCTAA  350

seq1  CTGGAAATTCAGTATTCATTGGAATAACCTAAATATTTCAAATTGTATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAATTCAGTATTCATTGGAATAACCTAAATATTTCAAATTGTATAG  400

seq1  TGTAAATATTTCAAATTGTACACCCACCAGTCTTGTGTGTTTATATTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATATTTCAAATTGTACACCCACCAGTCTTGTGTGTTTATATTAAA  450

seq1  ATGTACAAATTAACAAAGGCTAAGAAATCACAAAATCACACAACCTGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACAAATTAACAAAGGCTAAGAAATCACAAAATCACACAACCTGTGC  500

seq1  AACTCAGGTCCTTCTTCATATTGGTGAGCCCTGTAGCTGAGTGCCTTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGGTCCTTCTTCATATTGGTGAGCCCTGTAGCTGAGTGCCTTAAA  550

seq1  CTTGACTTAGTCTGAGATCTAGCTATTGCCTACTCTGTTTTACTCTGCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACTTAGTCTGAGATCTAGCTATTGCCTACTCTGTTTTACTCTGCAC  600

seq1  TGTACAAAGGACATTGCTCCTCCTGTTCTGTTCTGAGGGCAGAAACAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAAAGGACATTGCTCCTCCTGTTCTGTTCTGAGGGCAGAAACAATG  650

seq1  CTTCATGCAAATCCTTTCCCTGTTACTGCAAAGCACAGTTCATTCACGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGCAAATCCTTTCCCTGTTACTGCAAAGCACAGTTCATTCACGGA  700

seq1  GCCAAATGGGTAACATTAAAACTCTGTTGTGCTACTACCCTTTAACTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAATGGGTAACATTAAAACTCTGTTGTGCTACTACCCTTTAACTTAA  750

seq1  GAATACAGAAACTTTAATCAAGAGGAAAGCAAGGTCATTGCCCTGGGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACAGAAACTTTAATCAAGAGGAAAGCAAGGTCATTGCCCTGGGAAA  800

seq1  CAACAGACTGGGATCAGGGCCCTGTAAAGCAATATACCTCTTGTCAGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGACTGGGATCAGGGCCCTGTAAAGCAATATACCTCTTGTCAGGAA  850

seq1  AAATGTGCCAGAAAGGCTGAAAATCCATCTGTTCTAGAATTAGTATGCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGCCAGAAAGGCTGAAAATCCATCTGTTCTAGAATTAGTATGCCT  900

seq1  TCCCTGGGAGGGAAAAACTCAACACACAATTCAAAGATTAATTAAG-AAA  949
      |||||||||||||||||||||||||||||||| ||||||||||||| |||
seq2  TCCCTGGGAGGGAAAAACTCAACACACAATTC-AAGATTAATTAAGAAAA  949

seq1  AAAAAAAAATCTACCTTTTGCCTGGTGATTTCT-GCCTGGCTAGCTAGTC  998
      ||||||||||||||| |||| |||||||||||| ||||||||||||||||
seq2  AAAAAAAAATCTACC-TTTGGCTGGTGATTTCTGGCCTGGCTAGCTAGTC  998

seq1  TGCTCTCCT-GAAGAAACCATATCCT-GAGGCATCCCAGGAGATCTG-CT  1045
      ||||||||| |||||||| ||||||| |||||||||  ||||||||| ||
seq2  TGCTCTCCTGGAAGAAACAATATCCTGGAGGCATCCAGGGAGATCTGCCT  1048

seq1  TCACTTAAGCATCTGACACCACAGCCAAAGACCTCCCAGGAGATCT-GCT  1094
      ||||||| |||||||||||||||| | | |||||||  |||||||| |||
seq2  TCACTTAGGCATCTGACACCACAG-CTAGGACCTCCAGGGAGATCTGGCT  1097

seq1  GCACACA-GCACAATT--GAGCAAC--TGATCACCAGCTTG  1130
      ||||||| ||||||||  |||||||   ||||| |||||||
seq2  GCACACAGGCACAATTGGGAGCAACGTGGATCA-CAGCTTG  1137