BAC Information

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BAC

Clone NameB6Ng01-274G03
Chromosome13 (Build37)
Map Location 106,023,356 - 106,024,508
singlet/doubletsinglet
Overlap geneRnf180
Upstream geneCenpk, Adamts6, LOC667518, Sdccag10, 3110031B13Rik, A930021C24Rik, EG238836, Rgs7bp, 4933425L06Rik, LOC100040646, LOC100040656
Downstream geneHtr1a, EG668025, Olfr717-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274G03.bB6Ng01-274G03.g
ACCGA075698GA075699
length9981,133
definitionB6Ng01-274G03.b B6Ng01-274G03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacttcactccagtcagaatggctaagatcaaaaactcaggtgacagc
agatgctggcgaggatgtggagaaaggggaacactcctccattgttggtg
ggattgtaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaagatcccacaatacctctcctgggc
atatatccagaagatgtaccaaccggtaagaagaacacatgctccactat
gttcatagcagccttgtttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gaatactactcagctataaaaaaaatgaatttatgaaattcctaggcaaa
tggatggacctggagggtatcatcctgagtgaagtaacccaatcacaaag
gaactcgcacaatatgaactcactgataagtggataatagcccagaagat
ataagatacaacttgccaaacgcatgaaattcaagaacgaagaccaaagt
gtggacactttaccctttcttagaaatgggaacaaaacacccatagaagg
agttacagagacaaaatttggagctgtgacgaaaggattggaccatctag
tgattgccatatgcaggggatccatcccataaatcagcttccaaatgctg
acaccattgcatacactagcaagattttgctgaaaggacccagatatagc
tcttttcttgtgagactatgcccggggcctagccaaacacagaagtggat
gatcacagtccagctatttggatgggtcacacggctcctattggaggagc
tagagaaataccccaggagcttatgggaaatggtaaccctttaggtaa

gaattcctacaaaaacaccaagctcacagccataacatgtatgcagagga
cctggtggagacccatgcaggcctcatactcgctgcttcagccactgcga
gcccatgtgaggcttccttagctgactcagtgggctgtgttcttctggtc
ctacatgccctccaactcctacaattcatttactttagttttgtgttgtt
tacatgtatgtttgtataccatgtgtgtaccccttgaacttgagttacat
gtgattatgaactgtcacatggatgcttgcatcaaattaggatcctcttt
aagagcagcgagtgtctgcagctgctgacccttccctccagcccttgatt
tagtatttttaaaaccagcaacagcaacagtcaggtcaggtgaggtggct
cagccattaagagcatgtagtgctcttacagaggaaccaagaacgattcc
caacacccatgctgaatggctcacaaccacctgtaatccactaccaggag
atccaacacctgttctttggctctgggggcacttgcggtcacatgtgaat
aaacctgtatgcacatatacacataattttaagacaaatcttagaaatat
ataacaaggactctggggctttgtgattcaggaagtctggatgaaaatct
cccctccctcccctctctctctctctctctctctctccttccttcctaat
gctaatgatctgatcgcgttaaacttcaggagccaggaccctttttgctg
gcagaggttcttgtcttaatgggattcctgaacagggcagtgttactgat
aatgcaagtggcaacagtaatttgctaaaacaaagaaatcatttaaaaag
ggaatgatgaaacttgtcaggagggtgactgattcttctcttcacaagat
aataccatgtgaccatgcctgacagcactgtgtctatttttggtcatttt
aaatcctgccaaacttgtcagtgctttaccagtaggatatgtgatactca
acccgttgtgcggatggtgagacacacaagcccacttcttgctcatcatc
agagcagttctagcagctgacttcaccatgagatgtagtcccacctctgg
agaacgtctaatctgtctgctgattccatcgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_106023356_106024508
seq2: B6Ng01-274G03.g_63_1195

seq1  GAATTCCTACAAAAACACCAAGCTCACAGCCATAACATGTATGCAGAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACAAAAACACCAAGCTCACAGCCATAACATGTATGCAGAGGA  50

seq1  CCTGGTGGAGACCCATGCAGGCCTCATACTCGCTGCTTCAGCCACTGCGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTGGAGACCCATGCAGGCCTCATACTCGCTGCTTCAGCCACTGCGA  100

seq1  GCCCATGTGAGGCTTCCTTAGCTGACTCAGTGGGCTGTGTTCTTCTGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATGTGAGGCTTCCTTAGCTGACTCAGTGGGCTGTGTTCTTCTGGTC  150

seq1  CTACATGCCCTCCAACTCCTACAATTCATTTACTTTAGTTTTGTGTTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATGCCCTCCAACTCCTACAATTCATTTACTTTAGTTTTGTGTTGTT  200

seq1  TACATGTATGTTTGTATACCATGTGTGTACCCCTTGAACTTGAGTTACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTATGTTTGTATACCATGTGTGTACCCCTTGAACTTGAGTTACAT  250

seq1  GTGATTATGAACTGTCACATGGATGCTTGCATCAAATTAGGATCCTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTATGAACTGTCACATGGATGCTTGCATCAAATTAGGATCCTCTTT  300

seq1  AAGAGCAGCGAGTGTCTGCAGCTGCTGACCCTTCCCTCCAGCCCTTGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAGCGAGTGTCTGCAGCTGCTGACCCTTCCCTCCAGCCCTTGATT  350

seq1  TAGTATTTTTAAAACCAGCAACAGCAACAGTCAGGTCAGGTGAGGTGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATTTTTAAAACCAGCAACAGCAACAGTCAGGTCAGGTGAGGTGGCT  400

seq1  CAGCCATTAAGAGCATGTAGTGCTCTTACAGAGGAACCAAGAACGATTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATTAAGAGCATGTAGTGCTCTTACAGAGGAACCAAGAACGATTCC  450

seq1  CAACACCCATGCTGAATGGCTCACAACCACCTGTAATCCACTACCAGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACCCATGCTGAATGGCTCACAACCACCTGTAATCCACTACCAGGAG  500

seq1  ATCCAACACCTGTTCTTTGGCTCTGGGGGCACTTGCGGTCACATGTGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAACACCTGTTCTTTGGCTCTGGGGGCACTTGCGGTCACATGTGAAT  550

seq1  AAACCTGTATGCACATATACACATAATTTTAAGACAAATCTTAGAAATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGTATGCACATATACACATAATTTTAAGACAAATCTTAGAAATAT  600

seq1  ATAACAAGGACTCTGGGGCTTTGTGATTCAGGAAGTCTGGATGAAAATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAAGGACTCTGGGGCTTTGTGATTCAGGAAGTCTGGATGAAAATCT  650

seq1  CCCCTCCCTCCCCTCTCTCTCTCTCTCTCTCTCTCTCCTTCCTTCCTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCCTCCCCTCTCTCTCTCTCTCTCTCTCTCTCCTTCCTTCCTAAT  700

seq1  GCTAATGATCTGATCGCGTTAAACTTCAGGAGCCAGGACCCTTTTTGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATGATCTGATCGCGTTAAACTTCAGGAGCCAGGACCCTTTTTGCTG  750

seq1  GCAGAGGTTCTTGTCTTAATGGGATTCCTGAACAGGGCAGTGTTACTGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGTTCTTGTCTTAATGGGATTCCTGAACAGGGCAGTGTTACTGAT  800

seq1  AATGCAAGTGGCAACAGTAATTTGCTAAAACAAAGAAATCATTTAAAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAAGTGGCAACAGTAATTTGCTAAAACAAAGAAATCATTTAAAAAG  850

seq1  GGAATGATGAAACTTGTCAGGGAGGGTGACTGATTCTTCTCTTCACAAGA  900
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGAATGATGAAACTTGTCA-GGAGGGTGACTGATTCTTCTCTTCACAAGA  899

seq1  TAATACCATGTGACCATGCCTGACAGCACTGTGTCTATTTTTGGTCATTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TAATACCATGTGACCATGCCTGACAGCACTGTGTCTATTTTTGGTCA-TT  948

seq1  TTAAATCCTGCCAAACTTGTCAGTGCTTTACCAAGTAGGATTATGTGATA  1000
      |||||||||||||||||||||||||||||||| ||||||| |||||||||
seq2  TTAAATCCTGCCAAACTTGTCAGTGCTTTACC-AGTAGGA-TATGTGATA  996

seq1  CTCCAAACCCGTTGTTGCGGATGGTGAGACACCACAAAGCCCACTTTCTT  1050
      |||  ||||||||| |||||||||||||||| ||| ||||||||||   |
seq2  CTC--AACCCGTTG-TGCGGATGGTGAGACA-CAC-AAGCCCACTT--CT  1039

seq1  TGCTCATTCATCAGAAGCAAGTCCTTAGCAGCTGAACCTTCACCATGAGA  1100
      |||||| ||||||| ||||  ||  ||||||||||  |||||||||||||
seq2  TGCTCA-TCATCAG-AGCAGTTC--TAGCAGCTGA--CTTCACCATGAGA  1083

seq1  TGGTAGTCCCACCTCTGGAGACAGTCT-ATCTGTCTTGCTGATTCTCCAT  1149
      | |||||||||||||||||||  |||| ||||||| |||||||  |||||
seq2  T-GTAGTCCCACCTCTGGAGAACGTCTAATCTGTC-TGCTGAT--TCCAT  1129

seq1  CGCA  1153
      ||||
seq2  CGCA  1133


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