BAC Information

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BAC

Clone NameB6Ng01-274K04
Chromosome13 (Build37)
Map Location 29,463,713 - 29,497,111
singlet/doubletdoublet
Overlap geneCdkal1
Upstream geneLOC100042399, Ppia-ps13_297.1, LOC626683, 2610307P16Rik, Sox4, LOC100041135
Downstream geneE2f3, Mboat1, Agtr1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274K04.bB6Ng01-274K04.g
ACCGA075886GA075887
length8071,165
definitionB6Ng01-274K04.b B6Ng01-274K04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,496,306 - 29,497,111)(29,463,713 - 29,464,871)
sequence
gaattccctcctttggaattgtttgcaaagtcctagaataccagaattct
ctttcggtccccaaacattcacctcagcacgcagctccttcactcacatc
accccttgtgctttgcatggaggttatggtgatccaagccctctaccgtt
agtgtagatccccaagctgtttaccaggcaagcccttctttttaggaaac
aataatttgttgatctggccaaaaaatagtgagttggattcgcagtttgt
gaatgagaggcagggaaatcagatcagtttaaaatttgaatcttagaaat
caccaccttatcaagtcacagaccaggccagaaaggctaggtctcagtgt
gaaatctcacagccagtctggggctgaacctacagtgtgctatcgtttgt
ggccagggcaaccagaggtgtatttctgaaaggtggagtggactggcatg
gaacactttttatcaaaaataaatacacgtgaaactgactgggtagggta
tgaacttctcacgtatagctatccggcatggtagcattcctccgtattag
tgtgtcatagaagtaacaagtgagaaaaaaaaaactcatttaaatattgc
tttgggtgtcagagtgcagtatctgtctgaactccaacatgtatttcctg
ggtcttcagttttttaactgaaactagaagaataatatggctaacgtggc
catggagtgacagtcatctctaaaggaaaaagagagagagagagagagag
agagagagagagagagagagagagagagagagagagagagagagagaggg
agatgta

gaattctaatattcatctattctggggtaagggctgagccagaagatgaa
taaaaaaaaatgacacagtcatttaatctaagcaattatcagttctgaac
actactttttgatcagtaatgcccttctcaaaaggaaatttggtgcgaga
gttctttgatttttcccccccctttcccataatggcttcagctgccaagc
acaatattgcactgtggactgaagccaaatctagccaggtctgtggccgc
tctaggagagctgtttatcacagatgcagacaggaacctttgctgcagct
cccagaatggcacaggaaaaagcagccaactggctggcctgcctgggaaa
acctatgcagtctgtctgggctttccaaactcctctaggactactgtatg
gcaggcaccaggagacgctgggaccactgaagctagactgaaagttgtcc
agacacttgaaggctataatattttgtgtgggacagtacatagttgaaat
agcctttggggagcacttaaatcctacaaggccttctaatatgtggtaaa
ggacttgggactccagagttgtgctagaccatagtccctgttttatggtc
ctaaccagtactaggcccatccatgctcctctcatatgccctgtgctcaa
gcacatattcctgccaccctaaagtcacacaaagtcagacctttcctttt
tcccagtgactggtctgagacttcatagagactccttggggtttgcatag
aaacactactttctgaagtgaacactactttcctctcttggtggctctcc
ctgccctttcttatttcactccttaatgaagttccttcccaggttttaaa
aggaagccttttttttgctttgaggtttgctattgtgttagaccgccata
tatcatttccatccaatgcacgttcctcctgcttgggggttcagtcactt
cttgagatgttctcatcctatttaactcttgcacaagagaatgactcgtg
ccagcccttctttgcagaccgagcactgctgctgtatcctcctatgtcaa
gtagttctttctgcgttttcaccactgggggcgcgacaggattttttccg
tttttcttttgattcctcattgactctcatcttgtttcagagagaatcag
ccagttattaatatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_29496306_29497111
seq2: B6Ng01-274K04.b_42_848 (reverse)

seq1  TACATCT-CCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  49
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  50

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTCCTTTAGAGATGACTGTCA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTCCTTTAGAGATGACTGTCA  100

seq1  CTCCATGGCCACGTTAGCCATATTATTCTTCTAGTTTCAGTTAAAAAACT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGGCCACGTTAGCCATATTATTCTTCTAGTTTCAGTTAAAAAACT  150

seq1  GAAGACCCAGGAAATACATGTTGGAGTTCAGACAGATACTGCACTCTGAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACCCAGGAAATACATGTTGGAGTTCAGACAGATACTGCACTCTGAC  200

seq1  ACCCAAAGCAATATTTAAATGAGTTTTTTTTTTCTCACTTGTTACTTCTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAAGCAATATTTAAATGAGTTTTTTTTTTCTCACTTGTTACTTCTA  250

seq1  TGACACACTAATACGGAGGAATGCTACCATGCCGGATAGCTATACGTGAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACACTAATACGGAGGAATGCTACCATGCCGGATAGCTATACGTGAG  300

seq1  AAGTTCATACCCTACCCAGTCAGTTTCACGTGTATTTATTTTTGATAAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCATACCCTACCCAGTCAGTTTCACGTGTATTTATTTTTGATAAAA  350

seq1  AGTGTTCCATGCCAGTCCACTCCACCTTTCAGAAATACACCTCTGGTTGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCCATGCCAGTCCACTCCACCTTTCAGAAATACACCTCTGGTTGC  400

seq1  CCTGGCCACAAACGATAGCACACTGTAGGTTCAGCCCCAGACTGGCTGTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCCACAAACGATAGCACACTGTAGGTTCAGCCCCAGACTGGCTGTG  450

seq1  AGATTTCACACTGAGACCTAGCCTTTCTGGCCTGGTCTGTGACTTGATAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCACACTGAGACCTAGCCTTTCTGGCCTGGTCTGTGACTTGATAA  500

seq1  GGTGGTGATTTCTAAGATTCAAATTTTAAACTGATCTGATTTCCCTGCCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGATTTCTAAGATTCAAATTTTAAACTGATCTGATTTCCCTGCCT  550

seq1  CTCATTCACAAACTGCGAATCCAACTCACTATTTTTTGGCCAGATCAACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCACAAACTGCGAATCCAACTCACTATTTTTTGGCCAGATCAACA  600

seq1  AATTATTGTTTCCTAAAAAGAAGGGCTTGCCTGGTAAACAGCTTGGGGAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTGTTTCCTAAAAAGAAGGGCTTGCCTGGTAAACAGCTTGGGGAT  650

seq1  CTACACTAACGGTAGAGGGCTTGGATCACCATAACCTCCATGCAAAGCAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACTAACGGTAGAGGGCTTGGATCACCATAACCTCCATGCAAAGCAC  700

seq1  AAGGGGTGATGTGAGTGAAGGAGCTGCGTGCTGAGGTGAATGTTTGGGGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGTGATGTGAGTGAAGGAGCTGCGTGCTGAGGTGAATGTTTGGGGA  750

seq1  CCGAAAGAGAATTCTGGTATTCTAGGACTTTGCAAACAATTCCAAAGGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAAAGAGAATTCTGGTATTCTAGGACTTTGCAAACAATTCCAAAGGAG  800

seq1  GGAATTC  806
      |||||||
seq2  GGAATTC  807


seq1: chr13_29463713_29464871
seq2: B6Ng01-274K04.g_64_1228

seq1  GAATTCTAATATTCATCTATTCTGGGGTAAGGGCTGAGCCAGAAGATGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAATATTCATCTATTCTGGGGTAAGGGCTGAGCCAGAAGATGAA  50

seq1  TAAAAAAAAATGACACAGTCATTTAATCTAAGCAATTATCAGTTCTGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAATGACACAGTCATTTAATCTAAGCAATTATCAGTTCTGAAC  100

seq1  ACTACTTTTTGATCAGTAATGCCCTTCTCAAAAGGAAATTTGGTGCGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTTTTTGATCAGTAATGCCCTTCTCAAAAGGAAATTTGGTGCGAGA  150

seq1  GTTCTTTGATTTTTCCCCCCCCTTTCCCATAATGGCTTCAGCTGCCAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTGATTTTTCCCCCCCCTTTCCCATAATGGCTTCAGCTGCCAAGC  200

seq1  ACAATATTGCACTGTGGACTGAAGCCAAATCTAGCCAGGTCTGTGGCCGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATTGCACTGTGGACTGAAGCCAAATCTAGCCAGGTCTGTGGCCGC  250

seq1  TCTAGGAGAGCTGTTTATCACAGATGCAGACAGGAACCTTTGCTGCAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGAGAGCTGTTTATCACAGATGCAGACAGGAACCTTTGCTGCAGCT  300

seq1  CCCAGAATGGCACAGGAAAAAGCAGCCAACTGGCTGGCCTGCCTGGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAATGGCACAGGAAAAAGCAGCCAACTGGCTGGCCTGCCTGGGAAA  350

seq1  ACCTATGCAGTCTGTCTGGGCTTTCCAAACTCCTCTAGGACTACTGTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATGCAGTCTGTCTGGGCTTTCCAAACTCCTCTAGGACTACTGTATG  400

seq1  GCAGGCACCAGGAGACGCTGGGACCACTGAAGCTAGACTGAAAGTTGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCACCAGGAGACGCTGGGACCACTGAAGCTAGACTGAAAGTTGTCC  450

seq1  AGACACTTGAAGGCTATAATATTTTGTGTGGGACAGTACATAGTTGAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTTGAAGGCTATAATATTTTGTGTGGGACAGTACATAGTTGAAAT  500

seq1  AGCCTTTGGGGAGCACTTAAATCCTACAAGGCCTTCTAATATGTGGTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTGGGGAGCACTTAAATCCTACAAGGCCTTCTAATATGTGGTAAA  550

seq1  GGACTTGGGACTCCAGAGTTGTGCTAGACCATAGTCCCTGTTTTATGGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTGGGACTCCAGAGTTGTGCTAGACCATAGTCCCTGTTTTATGGTC  600

seq1  CTAACCAGTACTAGGCCCATCCATGCTCCTCTCATATGCCCTGTGCTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCAGTACTAGGCCCATCCATGCTCCTCTCATATGCCCTGTGCTCAA  650

seq1  GCACATATTCCTGCCACCCTAAAGTCACACAAAGTCAGACCTTTCCTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATATTCCTGCCACCCTAAAGTCACACAAAGTCAGACCTTTCCTTTT  700

seq1  TCCCAGTGACTGGTCTGAGACTTCATAGAGACTCCTTGGGGTTTGCATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGTGACTGGTCTGAGACTTCATAGAGACTCCTTGGGGTTTGCATAG  750

seq1  AAACACTACTTTCTGAAGTGAACACTACTTTCCTCTCTTGGTGGCTCTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTACTTTCTGAAGTGAACACTACTTTCCTCTCTTGGTGGCTCTCC  800

seq1  CTGCCCTTTCTTATTTCACTCCTTAATGAAGTTCCTTCCCAGGTTTTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTTTCTTATTTCACTCCTTAATGAAGTTCCTTCCCAGGTTTTAAA  850

seq1  AGGAAGCC-TTTTTTTGCTTTGAGGTTTGCTATTGTGTTAGACCGCCATA  899
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCCTTTTTTTTGCTTTGAGGTTTGCTATTGTGTTAGACCGCCATA  900

seq1  TATCATTTCCATCCAATGCACG-TCCTCCTGCTTGGGGGTTCAGTCACTT  948
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TATCATTTCCATCCAATGCACGTTCCTCCTGCTTGGGGGTTCAGTCACTT  950

seq1  CTTGAGATGTTCTCATCCTA-TTAACTCTTGCACAAGAGAATGACTCGTG  997
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTTGAGATGTTCTCATCCTATTTAACTCTTGCACAAGAGAATGACTCGTG  1000

seq1  CCAGCCC-TCTTTGCAGACCGAGCACTGCTGCTGTTATCCTCCTTATGTC  1046
      ||||||| |||||||||||||||||||||||||| |||||||| ||||||
seq2  CCAGCCCTTCTTTGCAGACCGAGCACTGCTGCTG-TATCCTCC-TATGTC  1048

seq1  AAGTTAGTCTTTCCTGCCTTTTCA-CACTGGGGGCGCGACAGGA-TTTTT  1094
      ||| ||||  || |||| |||||| ||||||||||||||||||| |||||
seq2  AAG-TAGTTCTTTCTGCGTTTTCACCACTGGGGGCGCGACAGGATTTTTT  1097

seq1  CCTTTTTTCTTTTTTGATTCCTCAATGACTCTCAATCCTGTTTCAGAG--  1142
      || ||||||  ||||||||||||| |||||||| ||| ||||||||||  
seq2  CCGTTTTTC--TTTTGATTCCTCATTGACTCTC-ATCTTGTTTCAGAGAG  1144

seq1  -ATCAGC--ATTATT-ATATT  1159
       ||||||   ||||| |||||
seq2  AATCAGCCAGTTATTAATATT  1165


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