BAC Information

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BAC

Clone NameB6Ng01-275L02
Chromosome13 (Build37)
Map Location 100,863,838 - 100,864,976
singlet/doubletsinglet
Overlap geneBdp1
Upstream geneLOC100039797, Zfp366, Ptcd2, Mrps27, Mtap1b, Cartpt, Mccc2
Downstream geneSerf1, Smn1, Naip2, Birc1-rs1, Naip5, Birc1c-ps1, Birc1f, EG667838, Naip1, Gtf2h2, Ocln, LOC667861, Marveld2, Rad17, Taf9, Ccdc125, Cdk7, Mrps36, Cenph, Ccnb1, Slc30a5, LOC619865, LOC619917, EG619937
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275L02.bB6Ng01-275L02.g
ACCGA076661GA076662
length1,1361,166
definitionB6Ng01-275L02.b B6Ng01-275L02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactattgtagccctggctgtcctggaactctttctgtaaaccag
gctggcctcaaactcacagagaccttcctgccttcctcctgtctctgcat
cttgggtgctgagattaaaggaatgcactaccaccacctggctaatttgg
taacatataataaggaatctttagacataacaataagagcagctagtgag
agggctcagtagttaagagcactgactgctctaaaggtcctgagttcaaa
aacccagcaaccacatggtggctcatatccatccataatgagatctgaca
ctctcttctgatatgtctaaagacaactacagtgtacttacatataataa
taagtaaatcttaaaaaaaattagaaaacaataagaaatgtttactctct
tttaaaataaaccagtggtaccagccaagtaactcagtggtttacagtat
actttaggtttgaggccaataataaaaataaataaataaataaacaaatg
ttacctttttaccccacttctggtacctactttttctagctttctgaaat
atgtatactagtatatctttttttagtttggttttattttcttagatcta
tgaggcaggctcttgctatgaagctcaaaatagttgggtgctcattctgt
aggctcatgctagcctcaaattcagcctttcaattgctgggattacacag
atgcacacctacgtccagccctcaggtagtcagccaactgtgcaaaagtc
catcagaacctcttgctcccatccaattataactattaaaaaaatattcc
aaatctttctttctactatactggctgttaatatcttattgaagcacaca
tacattataaatctgaaatgctatatctaaaatttggtgagcaggtgaga
tggctcttgccacaaagtctaacaagctgaatgcacagcagtagcagttg
tgcaacctccagaatgcacactgactgccacaactgtctctcacctctgt
actggctagttttgtatcaacttgaaacaagctggagttatcacagaaaa
ggagcttcagttgagaaatgcctccatgaagatcaactgtacggcatttt
cttcattaatgatccaggccttctctgggcctggta
gaattcaaagtagaaatgtctgattgtctttcataaaagtttagatttat
gattctcttaatattttatgagattactttttaagatgaatacaaaaata
atctattttctgtatgtaaccacaaattgtagtctgctagtaagagaaac
tggctgagaatattaccctgcttgtttatgttttgttaatctattacaac
ttgcttagttgggaatgcaagtggggtcttgggaataattgttctttcac
ttgaaatatgtaaaatgtttcttcatgagatggtattggggaacatgtat
tttcttacatacactcactgtattcatttactagaagaaaaatagtatat
agtcacattgtaatttcgatattgcttgaaagatgtttctgggatatata
agctgtgggagaaaaaataaagttgtttcttgttcatgagagaccagatc
ttttgggttcagactccatcatagagaacccgacctaaggttaaactcaa
gttagctaataagctggtacttagcaccagtttccaggcaaccccccaac
aagacctatgtctagcactagtttccaggttatcccccaacacaccctgt
gtctagaaccagtttccagtttattccctaacaaatctgcacctccaggt
tatcagcctgccgctgacacttcatttcctaacaatcaccaatcaggaag
aaagcagaagttaagtgtaacctccttcagcctaggcaggctggttcaga
ctgtatgccgctgaggcaggtccacctgccatgctgcttctccactcaac
tagtttcctttgatgttacactgcctgccacctgccttgaggctgaactg
gttctccaagattttccggagttaactgaaaactgtgaatttggcgactt
tctgctaaaggctgtgctgaaacttcacatctctacatcaagaaacttgg
cataactggggataggttccctctttattattattatttatttaatcttt
tttttatattatttgttatatatggagtgcattgtagctgtcttcagaac
acctcagagaggggagtcagattcgtatggattgtgtggacctacatggt
ggtttgctgggattgaactctgacttggaagacagtaggttctaccccac
ctggaggctcacatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_100863838_100864976
seq2: B6Ng01-275L02.b_43_1178

seq1  GAATTCACTATTGTAGCCCTGGCTGTCCTGGAACTCTTTCTGTAAACCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATTGTAGCCCTGGCTGTCCTGGAACTCTTTCTGTAAACCAG  50

seq1  GCTGGCCTCAAACTCACAGAGACCTTCCTGCCTTCCTCCTGTCTCTGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCTCAAACTCACAGAGACCTTCCTGCCTTCCTCCTGTCTCTGCAT  100

seq1  CTTGGGTGCTGAGATTAAAGGAATGCACTACCACCACCTGGCTAATTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGTGCTGAGATTAAAGGAATGCACTACCACCACCTGGCTAATTTGG  150

seq1  TAACATATAATAAGGAATCTTTAGACATAACAATAAGAGCAGCTAGTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATATAATAAGGAATCTTTAGACATAACAATAAGAGCAGCTAGTGAG  200

seq1  AGGGCTCAGTAGTTAAGAGCACTGACTGCTCTAAAGGTCCTGAGTTCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTCAGTAGTTAAGAGCACTGACTGCTCTAAAGGTCCTGAGTTCAAA  250

seq1  AACCCAGCAACCACATGGTGGCTCATATCCATCCATAATGAGATCTGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGCAACCACATGGTGGCTCATATCCATCCATAATGAGATCTGACA  300

seq1  CTCTCTTCTGATATGTCTAAAGACAACTACAGTGTACTTACATATAATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTCTGATATGTCTAAAGACAACTACAGTGTACTTACATATAATAA  350

seq1  TAAGTAAATCTTAAAAAAAATTAGAAAACAATAAGAAATGTTTACTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAAATCTTAAAAAAAATTAGAAAACAATAAGAAATGTTTACTCTCT  400

seq1  TTTAAAATAAACCAGTGGTACCAGCCAAGTAACTCAGTGGTTTACAGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATAAACCAGTGGTACCAGCCAAGTAACTCAGTGGTTTACAGTAT  450

seq1  ACTTTAGGTTTGAGGCCAATAATAAAAATAAATAAATAAATAAACAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAGGTTTGAGGCCAATAATAAAAATAAATAAATAAATAAACAAATG  500

seq1  TTACCTTTTTACCCCACTTCTGGTACCTACTTTTTCTAGCTTTCTGAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTTTTACCCCACTTCTGGTACCTACTTTTTCTAGCTTTCTGAAAT  550

seq1  ATGTATACTAGTATATCTTTTTTTAGTTTGGTTTTATTTTCTTAGATCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATACTAGTATATCTTTTTTTAGTTTGGTTTTATTTTCTTAGATCTA  600

seq1  TGAGGCAGGCTCTTGCTATGAAGCTCAAAATAGTTGGGTGCTCATTCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCAGGCTCTTGCTATGAAGCTCAAAATAGTTGGGTGCTCATTCTGT  650

seq1  AGGCTCATGCTAGCCTCAAATTCAGCCTTTCAATTGCTGGGATTACACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCATGCTAGCCTCAAATTCAGCCTTTCAATTGCTGGGATTACACAG  700

seq1  ATGCACACCTACGTCCAGCCCTCAGGTAGTCAGCCAACTGTGCAAAAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACACCTACGTCCAGCCCTCAGGTAGTCAGCCAACTGTGCAAAAGTC  750

seq1  CATCAGAACCTCTTGCTCCCATCCAATTATAACTATTAAAAAAATATTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGAACCTCTTGCTCCCATCCAATTATAACTATTAAAAAAATATTCC  800

seq1  AAATCTTTCTTTCTACTATACTGGCTGTTAATATCTTATTGAAGCACACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTTCTTTCTACTATACTGGCTGTTAATATCTTATTGAAGCACACA  850

seq1  TACATTATAAATCTGAAATGCTATATCTAAAAATTGGTGAGCAGGTGAGA  900
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TACATTATAAATCTGAAATGCTATATCTAAAATTTGGTGAGCAGGTGAGA  900

seq1  TGGCTCTTGCCACAAAGTCTAACAAGCTGAATGCACAGCAGTAGCAG-TG  949
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGGCTCTTGCCACAAAGTCTAACAAGCTGAATGCACAGCAGTAGCAGTTG  950

seq1  TGCAACCTCCAGAATGCACACTGACTGCCACAAACTGTCTCTTCACCTCT  999
      ||||||||||||||||||||||||||||||| ||||||||| ||||||||
seq2  TGCAACCTCCAGAATGCACACTGACTGCCAC-AACTGTCTC-TCACCTCT  998

seq1  GTACTGGCTAGTTTTGTATCAACTTGAAAC-AGCTGGAGTTATCACAGAA  1048
      |||||||||||||||||||||||||||||| ||||||||||||||||| |
seq2  GTACTGGCTAGTTTTGTATCAACTTGAAACAAGCTGGAGTTATCACAG-A  1047

seq1  AAAGGAGCTTCAGTTGAGGAAATGCCTCCATG-AGATCCAACTGTACGGC  1097
      ||||||||||||||||| |||||||||||||| |||| ||||||||||||
seq2  AAAGGAGCTTCAGTTGA-GAAATGCCTCCATGAAGAT-CAACTGTACGGC  1095

seq1  ATTTTCTCAATTAGTGATCAAGGGGCTTTCTCTGGG-CTGGTA  1139
      |||||||  |||| ||||| |  ||| ||||||||| ||||||
seq2  ATTTTCTTCATTAATGATCCA--GGCCTTCTCTGGGCCTGGTA  1136