BAC Information

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BAC

Clone NameB6Ng01-275L21
Chromosome13 (Build37)
Map Location 36,158,084 - 36,349,734
singlet/doubletdoublet
Overlap geneLyrm4, Fars2, LOC100041590
Upstream geneCdyl, Rpp40, LOC100041568, Ppp1r3g, LOC100042773
Downstream geneLOC666758, Nrn1, F13a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275L21.bB6Ng01-275L21.g
ACCGA076697GA076698
length1,1741,170
definitionB6Ng01-275L21.b B6Ng01-275L21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,348,544 - 36,349,734)(36,158,084 - 36,159,276)
sequence
gaattcaaacactaggatatacatctcaagccagtcttccaaccatatct
gttaatatcccattggcccaagcagtcaagagggcaagcaccaaagcagc
agggcagaaaaatatgttcttcctacagaagaaaatgcttcaaagctact
gggcaatgtaagtgtacacaggcagaaatagatccctgaatgagattaca
acctggagcaatttaacctgaccaaatttaagactttctacctgcatact
ccccagtcaacttgatcagtttgatcacttggacaggaaaggagtgggaa
actgagtggcaattactttatacagtcatcaaatatcccaagctttaggt
gatgaaaataagaatcctacacgagtttccacatccaaaggatacactgg
gtagaaacatggctgccaacattaggcatgcagcacacagcacaactgct
gcagagagctccggggagcaagcacgtgcgccagtctgaagccagaggtg
gaggcttcacttgcacactagcaagagaaacactggaaggtgacaggatg
agaagcaggatcgggaaaactaaaatctctacaaggaaacacatccaatt
ccctgcaaactgcagactggaaaccccaggcaagctcccagctacagctc
ctaatcaagcctaccctaaaccacgctttcccggctgggagagactgtca
gaggggggaccgaagctgacagaacaccaggccacagaggcggatgccag
agaggattaaaactttacagtcgctgggttgagaatatgaataatatgac
aataaatgagagagataaagtacgaggaccatacatgacaagcagagggg
taatcgtcatggggctgtcaacttccacccactcacagttcatggagaag
tgattttttttttttttaagaatgatgtgataacaaagaaaactgaagct
actcaaggaagaactatatatatttcatatatatatatacacacatacat
acatatacatatatattacttttatgaactagcacaaaaaggaagaaaag
ccacaaacctgtaaaatacatactgaatacagtgaataaatatctgatat
aaatgtagagcctacaatcagtaaaaaacagaattggtagattaatcagc
tgactgaaagaaatctgtatgtca

gaattctctgaggagatgctgttataaatagtataacccaaaaggaattg
tttacttttcatgcaaatattaaatatgtataaaataataaacaataaac
cctattaaaactttggatatttagaaaatgaatatctaaatattcattct
aaatgtcatttagaatgaatattctcgacagaaaacaaacacatgataca
aagagctctgagttcctacttctgggttgaggtgagttaactggcttgct
ttctaatgtccactcacccactacaaaaccttgctgagtaactccagatg
cagatcaggtgtttctgggttctgaatgtaaggaaatggttcttaaatat
aaagtactcccagcaagtgctaactaagtaaaacactcaggaagataacc
ctacatacactgtccaagtccatgacaatggagctgaaggagtctggagg
acaagtcctcacctacacttctaactgaactttgaagttccttccgttgg
tgcaaactcaacatctgcaagcttccatagtctctttggctgttaggaaa
aagtgttaagaagtgtgtgtgctaggcagttcatattcctaccataatac
agccagaagacgaataaacacagtaatccccttagtgctgacacacccca
ctccacagtcttaggcttagaaaccctgaaggctctaacattccacatgg
cagctgggacaaagcaaagagccacttaggattcaagtctgtggatgatt
atgactttttcttaaagacagtttttcttttattaaaagtagattttttt
cccacacaatatattctgattatggtttccctttccctaacccctctcag
ttcctccctccttcccatccagattcataccctttctgtcttcgcttaga
aaacaacatttaaggcatataataaaataagataaccaaaaccacaaatc
agaatgcagaataaaaatagagaaaatagccaaagaaaaagcacagagtg
cattgcacacgcagaattccataaaaaaacacaaagcagcttataaatat
attattgcaaatgaacaggtatgttaaaaacagacctgcacaacatacta
tgaaacaagaatccccaaaagaatgactgttcatttgtagctatctactg
ctgaccacagcctttatgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_36348544_36349734
seq2: B6Ng01-275L21.b_45_1218 (reverse)

seq1  TGACATTTACAGTTTTTCTTTTCATTTCAGCTGGGTTTATCTACCCATTT  50
      |||||  ||||| |||   |||||  |||||| | || ||||| ||| ||
seq2  TGACA--TACAGATTT--CTTTCA-GTCAGCT-GATTAATCTA-CCAATT  43

seq1  CTGTTTTTTAACTGATTGGTAGGCTTCTTACATTTATATCAGATA-TTAT  99
      ||||||||| ||||||| |||||||   ||||||||||||||||| ||||
seq2  CTGTTTTTT-ACTGATT-GTAGGCT--CTACATTTATATCAGATATTTAT  89

seq1  TCACTTGTTATTTTTATGTATTGTAATTTTACAGGTTTGTGGCTTTTCTT  149
      |||| |||  |   |||||      |||||||||||||||||||||||||
seq2  TCAC-TGTATTCAGTATGT------ATTTTACAGGTTTGTGGCTTTTCTT  132

seq1  CCTTTTTGTTGCTAGTTCATAAAAGTAATATATATGTATATGTATGTATG  199
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTG-TGCTAGTTCATAAAAGTAATATATATGTATATGTATGTATG  181

seq1  TGTGTATATATATATATGAAATATATATAGTTCTTCCTTGAGTAGCTTCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATATATATATATGAAATATATATAGTTCTTCCTTGAGTAGCTTCA  231

seq1  GTTTTCTTTGTTATCACATCATTCTT-AAAAAAAAAAAAATCACTTCTCC  298
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GTTTTCTTTGTTATCACATCATTCTTAAAAAAAAAAAAAATCACTTCTCC  281

seq1  ATGAACTGTGAGTGGGTGGAAGTTGACAGCCCCATGACGATTACCCCTCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTGTGAGTGGGTGGAAGTTGACAGCCCCATGACGATTACCCCTCT  331

seq1  GCTTGTCATGTATGGTCCTCGTACTTTATCTCTCTCATTTATTGTCATAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTCATGTATGGTCCTCGTACTTTATCTCTCTCATTTATTGTCATAT  381

seq1  TATTCATATTCTCAACCCAGCGACTGTAAAGTTTTAATCCTCTCTGGCAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATATTCTCAACCCAGCGACTGTAAAGTTTTAATCCTCTCTGGCAT  431

seq1  CCGCCTCTGTGGCCTGGTGTTCTGTCAGCTTCGGTCCCCCCTCTGACAGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCTCTGTGGCCTGGTGTTCTGTCAGCTTCGGTCCCCCCTCTGACAGT  481

seq1  CTCTCCCAGCCGGGAAAGCGTGGTTTAGGGTAGGCTTGATTAGGAGCTGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCAGCCGGGAAAGCGTGGTTTAGGGTAGGCTTGATTAGGAGCTGT  531

seq1  AGCTGGGAGCTTGCCTGGGGTTTCCAGTCTGCAGTTTGCAGGGAATTGGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGAGCTTGCCTGGGGTTTCCAGTCTGCAGTTTGCAGGGAATTGGA  581

seq1  TGTGTTTCCTTGTAGAGATTTTAGTTTTCCCGATCCTGCTTCTCATCCTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTCCTTGTAGAGATTTTAGTTTTCCCGATCCTGCTTCTCATCCTG  631

seq1  TCACCTTCCAGTGTTTCTCTTGCTAGTGTGCAAGTGAAGCCTCCACCTCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTCCAGTGTTTCTCTTGCTAGTGTGCAAGTGAAGCCTCCACCTCT  681

seq1  GGCTTCAGACTGGCGCACGTGCTTGCTCCCCGGAGCTCTCTGCAGCAGTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCAGACTGGCGCACGTGCTTGCTCCCCGGAGCTCTCTGCAGCAGTT  731

seq1  GTGCTGTGTGCTGCATGCCTAATGTTGGCAGCCATGTTTCTACCCAGTGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGTGTGCTGCATGCCTAATGTTGGCAGCCATGTTTCTACCCAGTGT  781

seq1  ATCCTTTGGATGTGGAAACTCGTGTAGGATTCTTATTTTCATCACCTAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTGGATGTGGAAACTCGTGTAGGATTCTTATTTTCATCACCTAAA  831

seq1  GCTTGGGATATTTGATGACTGTATAAAGTAATTGCCACTCAGTTTCCCAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGGATATTTGATGACTGTATAAAGTAATTGCCACTCAGTTTCCCAC  881

seq1  TCCTTTCCTGTCCAAGTGATCAAACTGATCAAGTTGACTGGGGAGTATGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCCTGTCCAAGTGATCAAACTGATCAAGTTGACTGGGGAGTATGC  931

seq1  AGGTAGAAAGTCTTAAATTTGGTCAGGTTAAATTGCTCCAGGTTGTAATC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGAAAGTCTTAAATTTGGTCAGGTTAAATTGCTCCAGGTTGTAATC  981

seq1  TCATTCAGGGATCTATTTCTGCCTGTGTACACTTACATTGCCCAGTAGCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCAGGGATCTATTTCTGCCTGTGTACACTTACATTGCCCAGTAGCT  1031

seq1  TTGAAGCATTTTCTTCTGTAGGAAGAACATATTTTTCTGCCCTGCTGCTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGCATTTTCTTCTGTAGGAAGAACATATTTTTCTGCCCTGCTGCTT  1081

seq1  TGGTGCTTGCCCTCTTGACTGCTTGGGCCAATGGGATATTAACAGATATG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCTTGCCCTCTTGACTGCTTGGGCCAATGGGATATTAACAGATATG  1131

seq1  GTTGGAAGACTGGCTTGAGATGTATATCCTAGTGTTTGAATTC  1191
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAAGACTGGCTTGAGATGTATATCCTAGTGTTTGAATTC  1174


seq1: chr13_36158084_36159276
seq2: B6Ng01-275L21.g_68_1237

seq1  GAATTCTCTGAGGAGATGCTGTTATAAATAGTATAACCCAAAAGGAATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGAGGAGATGCTGTTATAAATAGTATAACCCAAAAGGAATTG  50

seq1  TTTACTTTTCATGCAAATATTAAATATGTATAAAATAATAAACAATAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTTTCATGCAAATATTAAATATGTATAAAATAATAAACAATAAAC  100

seq1  CCTATTAAAACTTTGGATATTTAGAAAATGAATATCTAAATATTCATTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTAAAACTTTGGATATTTAGAAAATGAATATCTAAATATTCATTCT  150

seq1  AAATGTCATTTAGAATGAATATTCTCGACAGAAAACAAACACATGATACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCATTTAGAATGAATATTCTCGACAGAAAACAAACACATGATACA  200

seq1  AAGAGCTCTGAGTTCCTACTTCTGGGTTGAGGTGAGTTAACTGGCTTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTCTGAGTTCCTACTTCTGGGTTGAGGTGAGTTAACTGGCTTGCT  250

seq1  TTCTAATGTCCACTCACCCACTACAAAACCTTGCTGAGTAACTCCAGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATGTCCACTCACCCACTACAAAACCTTGCTGAGTAACTCCAGATG  300

seq1  CAGATCAGGTGTTTCTGGGTTCTGAATGTAAGGAAATGGTTCTTAAATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCAGGTGTTTCTGGGTTCTGAATGTAAGGAAATGGTTCTTAAATAT  350

seq1  AAAGTACTCCCAGCAAGTGCTAACTAAGTAAAACACTCAGGAAGATAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACTCCCAGCAAGTGCTAACTAAGTAAAACACTCAGGAAGATAACC  400

seq1  CTACATACACTGTCCAAGTCCATGACAATGGAGCTGAAGGAGTCTGGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATACACTGTCCAAGTCCATGACAATGGAGCTGAAGGAGTCTGGAGG  450

seq1  ACAAGTCCTCACCTACACTTCTAACTGAACTTTGAAGTTCCTTCCGTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTCCTCACCTACACTTCTAACTGAACTTTGAAGTTCCTTCCGTTGG  500

seq1  TGCAAACTCAACATCTGCAAGCTTCCATAGTCTCTTTGGCTGTTAGGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAACTCAACATCTGCAAGCTTCCATAGTCTCTTTGGCTGTTAGGAAA  550

seq1  AAGTGTTAAGAAGTGTGTGTGCTAGGCAGTTCATATTCCTACCATAATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTAAGAAGTGTGTGTGCTAGGCAGTTCATATTCCTACCATAATAC  600

seq1  AGCCAGAAGACGAATAAACACAGTAATCCCCTTAGTGCTGACACACCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAAGACGAATAAACACAGTAATCCCCTTAGTGCTGACACACCCCA  650

seq1  CTCCACAGTCTTAGGCTTAGAAACCCTGAAGGCTCTAACATTCCACATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACAGTCTTAGGCTTAGAAACCCTGAAGGCTCTAACATTCCACATGG  700

seq1  CAGCTGGGACAAAGCAAAGAGCCACTTAGGATTCAAGTCTGTGGATGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGGACAAAGCAAAGAGCCACTTAGGATTCAAGTCTGTGGATGATT  750

seq1  ATGACTTTTTCTTAAAGACAGTTTTTCTTTTATTAAAAGTAGATTTTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTTTTCTTAAAGACAGTTTTTCTTTTATTAAAAGTAGATTTTTTT  800

seq1  CCCACACAATATATTCTGATTATGGTTTCCCTTTCCCTAACCCCTCTCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACAATATATTCTGATTATGGTTTCCCTTTCCCTAACCCCTCTCAG  850

seq1  TTCCTCCCTCCTTCCCATCCAGATTCATACCCTTTCTGTCTTCGCTTAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCCTCCTTCCCATCCAGATTCATACCCTTTCTGTCTTCGCTTAGA  900

seq1  AAACAAACATTTAAGGCATAATAATAAAATAAGATAAACCAAAACCAACA  950
      |||| |||||||||||||| ||||||||||||||| |||||||||| |||
seq2  AAAC-AACATTTAAGGCAT-ATAATAAAATAAGAT-AACCAAAACC-ACA  946

seq1  AATCAGAATGCAGAAATAAAAAATAGAAGAAAAATAGCCAAAGAAAAAGC  1000
      |||||||||||||||   |||||||||   ||||||||||||||||||||
seq2  AATCAGAATGCAGAA--TAAAAATAGA--GAAAATAGCCAAAGAAAAAGC  992

seq1  ACAAGAAGTGCATTTGCACACGCAGGAATTCCAT-AAAAAACACAAAAGG  1049
      |||   |||||| ||||||||||| ||||||||| ||||||||||||   
seq2  ACA--GAGTGCA-TTGCACACGCA-GAATTCCATAAAAAAACACAAA---  1035

seq1  GAAGC-TATAAATATAT--ATGCAAATGACCAGTAAGGTAAAAAACAAGA  1096
      | ||| |||||||||||   ||||||||| |||  | || |||||| |||
seq2  GCAGCTTATAAATATATTATTGCAAATGAACAGGTATGTTAAAAAC-AGA  1084

seq1  CCCTGCCACAACATACTATGAGACAAAGAACCCCCAAAAGATGGCACTGT  1146
       |||| ||||||||||||||| || ||||| ||||||||||  | ||  |
seq2  -CCTG-CACAACATACTATGAAAC-AAGAATCCCCAAAAGAATG-AC--T  1128

seq1  GTTCATTTTGTGATAGCTATCTACTGCTGGGCACAGGGCTTTATGAG  1193
      ||||||||     ||||||||||||||||  |||| | |||||||||
seq2  GTTCATTT----GTAGCTATCTACTGCTGACCACA-GCCTTTATGAG  1170


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