BAC Information

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BAC

Clone NameB6Ng01-276B21
Chromosome13 (Build37)
Map Location 10,853,451 - 10,988,404
singlet/doubletdoublet
Overlap genenone
Upstream geneChrm3, LOC100039604
Downstream geneLOC100039648, Zp4, Ryr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-276B21.bB6Ng01-276B21.g
ACCGA076976GA076977
length1,0901,103
definitionB6Ng01-276B21.b B6Ng01-276B21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,853,451 - 10,854,530)(10,987,320 - 10,988,404)
sequence
gaattccgtgtgtgtgtgcattcatgttcatgtatttgtgcatgcttgtg
tgtgtgtatgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgaatgtcatgtactcagagatcagaagacaacttgggac
tgtcaagtctcttctttcatcacttttgtgatcaaactcagttcatcaga
cttagtagcaagtaccttatctactgagtcatttgacagcctatagttga
agacattgttaaacactatcactttgtcatgcttaaagcattataaatga
cctataggatcagtgtggtgagccattgctttcaaggaaataaaaattcc
cagaatatggagactttagataggtttaatttgtagcccatgagagagat
gtgagtatacatatagaccgagtccatgtaatgacagactataacctcat
aatctaatctaaatacatagagattgtaaatacgtagagataatcacttt
gattatctatcaacttgattagatatgtggcaccacagctttccggtagt
tgtgagggggagaggattaactaaagaggaagacactccatggactggaa
agcaacaggccttcagctaagtactcagatggactaaaaggggcacaaga
gaaaggctgtaattctttcttccactccctgggctccatccacctggtga
actgttctgctcagcatgtcctccccaccatgattagactggctctgaaa
ttctggagcataccaaacttttcccactctttaattttctttcttctggt
aatttgtcatgggaaaagaaaagtaacttgtgtttgtgtaatgcttaaaa
caaagagcatcttttatttctttcaaaaatattctcccacatgtaatgcc
taatgccaccttgatgtagatgccttccaagcttcctatggaaaaatatt
caacttattttcaagttagggaacccaaccaagtaatttaaacacatcac
aggaccttctggcttttccttgggactgctttttcttgcattttacctac
aaaggccatttattggtattgaagaaaccaagggacagcc

gaattcattgtggcacagagaggaggcttgcttaaaatgaactacatcct
tcacattttattgtcttaatgagggaaacatcctttaaaagtagtatcaa
ttatgtgtatgtgaggataattactgagttatttttattttcaaaaaata
atgtgggctgctagcaatgttggtacgtttttggagtgctggactagcat
gcaagaaactctgggttgaagcttccatatttgataagcctggtgtggta
gtgcacatctgtaatctcagtatggacaactggagactggggaagaaaga
ttaaaggccatacttgtctatatatgagcttgaggctaacctgtgctaca
taagcctttgtgtaaataaaacctccaaaagcaagcaaacaacaacaaaa
caaaacgaaatgaaacaaaaactctagacaaaaataaggattattgattc
actataatgtatggtgtgtgtttttttttatttttaggttaactaaaggt
ggagaaatatatatatatatatatgtatatatatgtgattttttttccta
atactaaactatgtacagagaaaaacctataatttacaatgatttttctt
tcattctgaagtttaataattctctgtagcattctttgatttatttaaat
ggatacatttcataagtgtctctccttggtgtatctgaaaaaaaaattga
gtgagcctgattacccaatttaacataaagaaatattgattatttatttt
catgactgactgactgattgaaataaggtctcaatcactctttgtagccc
aggctggcccagaatttccctataaagctcagactctttttctcagcatc
cagattgctaagtggtacagaagtgagcagttttatgcctgggattaatt
tttaatatttgacattcttttttcttgcattgaaccatcaaaaagagggg
cctttattgtttaagaaactgaatttttctttgaagtttggattttggtg
ttttaaattgcaaaaaaggcacagactgggcagaaataagttgtagaatt
ggtcttcaccgaggtaatagaacaagccagcttggtaacagtaggtcatg
tgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_10853451_10854530
seq2: B6Ng01-276B21.b_46_1135

seq1  GAATTCCGTGTGTGTGTGCATTCATGTTCATGTATTTGTGCATGCTTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGTGTGTGTGTGCATTCATGTTCATGTATTTGTGCATGCTTGTG  50

seq1  TGTGTGTATGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTATGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  100

seq1  TGTGTGTGTGTGAATGTCATGTACTCAGAGATCAGAAGACAACTTGGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGAATGTCATGTACTCAGAGATCAGAAGACAACTTGGGAC  150

seq1  TGTCAAGTCTCTTCTTTCATCACTTTTGTGATCAAACTCAGTTCATCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAGTCTCTTCTTTCATCACTTTTGTGATCAAACTCAGTTCATCAGA  200

seq1  CTTAGTAGCAAGTACCTTATCTACTGAGTCATTTGACAGCCTATAGTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTAGCAAGTACCTTATCTACTGAGTCATTTGACAGCCTATAGTTGA  250

seq1  AGACATTGTTAAACACTATCACTTTGTCATGCTTAAAGCATTATAAATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTGTTAAACACTATCACTTTGTCATGCTTAAAGCATTATAAATGA  300

seq1  CCTATAGGATCAGTGTGGTGAGCCATTGCTTTCAAGGAAATAAAAATTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAGGATCAGTGTGGTGAGCCATTGCTTTCAAGGAAATAAAAATTCC  350

seq1  CAGAATATGGAGACTTTAGATAGGTTTAATTTGTAGCCCATGAGAGAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATATGGAGACTTTAGATAGGTTTAATTTGTAGCCCATGAGAGAGAT  400

seq1  GTGAGTATACATATAGACCGAGTCCATGTAATGACAGACTATAACCTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTATACATATAGACCGAGTCCATGTAATGACAGACTATAACCTCAT  450

seq1  AATCTAATCTAAATACATAGAGATTGTAAATACGTAGAGATAATCACTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAATCTAAATACATAGAGATTGTAAATACGTAGAGATAATCACTTT  500

seq1  GATTATCTATCAACTTGATTAGATATGTGGCACCACAGCTTTCCGGTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATCTATCAACTTGATTAGATATGTGGCACCACAGCTTTCCGGTAGT  550

seq1  TGTGAGGGGGAGAGGATTAACTAAAGAGGAAGACACTCCATGGACTGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGGGGAGAGGATTAACTAAAGAGGAAGACACTCCATGGACTGGAA  600

seq1  AGCAACAGGCCTTCAGCTAAGTACTCAGATGGACTAAAAGGGGCACAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACAGGCCTTCAGCTAAGTACTCAGATGGACTAAAAGGGGCACAAGA  650

seq1  GAAAGGCTGTAATTCTTTC-TCCACTCCCTGGGCTCCATCCACCTGGTGA  699
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GAAAGGCTGTAATTCTTTCTTCCACTCCCTGGGCTCCATCCACCTGGTGA  700

seq1  ACTGTTCTGCTCAGCATGTCCTCCCCACCATGATTAGACTGGCTCTGAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTCTGCTCAGCATGTCCTCCCCACCATGATTAGACTGGCTCTGAAA  750

seq1  TTCTGGAGCATACCAAAC-TTTCCCACTCTTTAATTTTCTTTCTTCTGGT  798
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTCTGGAGCATACCAAACTTTTCCCACTCTTTAATTTTCTTTCTTCTGGT  800

seq1  AATTTGTCATGGGAAAAGAAAAGTAACTTGTGTTTGTGTAATGCTTAAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTCATGGGAAAAGAAAAGTAACTTGTGTTTGTGTAATGCTTAAAA  850

seq1  CAAAGAGCATCTTTTATTTCTTTCAAAAATATTCTCCCACATGTAATGCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGCATCTTTTATTTCTTTCAAAAATATTCTCCCACATGTAATGCC  900

seq1  TAATGCCACC-TGATGTAGATGCCTTCCAAGCTT-CTAT-GAAAAATATT  945
      |||||||||| ||||||||||||||||||||||| |||| ||||||||||
seq2  TAATGCCACCTTGATGTAGATGCCTTCCAAGCTTCCTATGGAAAAATATT  950

seq1  CAACTTATTTTCAAGTAAGGAAACCAAACCAAGTAATTTTAAACAACATC  995
      |||||||||||||||| ||| |||| |||||||||| ||||||| |||||
seq2  CAACTTATTTTCAAGTTAGGGAACCCAACCAAGTAA-TTTAAAC-ACATC  998

seq1  ACAGGACCTTCTGGCTTTTCCTTGGGACTGCTTTT--CTGCATTTTACCT  1043
      |||||||||||||||||||||||||||||||||||   ||||||||||||
seq2  ACAGGACCTTCTGGCTTTTCCTTGGGACTGCTTTTTCTTGCATTTTACCT  1048

seq1  ACAAA-GCCATTTA-TGGTATTG-AGAA--CCAGGGACAGCC  1080
      ||||| |||||||| |||||||| ||||  | ||||||||||
seq2  ACAAAGGCCATTTATTGGTATTGAAGAAACCAAGGGACAGCC  1090


seq1: chr13_10987320_10988404
seq2: B6Ng01-276B21.g_69_1171 (reverse)

seq1  GCACATGACCTCCTGTTACC-AGCT-GCTTG-TCTATTAACCTCGGTGAA  47
      ||||||||||| |||||||| |||| ||||| |||||| |||||||||||
seq2  GCACATGACCTACTGTTACCAAGCTGGCTTGTTCTATT-ACCTCGGTGAA  49

seq1  GACAATTTCTCCA--CTATTTCTG-CCAGTCTGTGCCTTTTTT-CCATTT  93
      ||| | |||| ||   |||||||| |||||||||||||||||| | ||||
seq2  GACCAATTCTACAACTTATTTCTGCCCAGTCTGTGCCTTTTTTGCAATTT  99

seq1  AAACCA-CAAAATCCAAACTTCAA--GAAAATTCAGTTTCTTAA--CATA  138
      ||| || |||||||||||||||||   |||||||||||||||||   |||
seq2  AAAACACCAAAATCCAAACTTCAAAGAAAAATTCAGTTTCTTAAACAATA  149

seq1  AA-GCCCCTCTTTTTGATGGTTCAATGC-AGAAAAA--GATGTCAAATAT  184
      || ||||||||||||||||||||||||| |||||||   |||||||||||
seq2  AAGGCCCCTCTTTTTGATGGTTCAATGCAAGAAAAAAGAATGTCAAATAT  199

seq1  TAAAAATTAAT-CCAGGCATAAAACTGCTCACTTCTGTACCACTTAGCAA  233
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATTAATCCCAGGCATAAAACTGCTCACTTCTGTACCACTTAGCAA  249

seq1  TCTGGATGCTGAG-AAAAGAGTCTGAGCTTTATAGGG-AATTCTGGGCCA  281
      ||||||||||||| ||||||||||||||||||||||| ||||||||||||
seq2  TCTGGATGCTGAGAAAAAGAGTCTGAGCTTTATAGGGAAATTCTGGGCCA  299

seq1  GCCTGGGCTACAAAGAGTGATTGAGACCTTATTTCAATCAGTCAGTCAGT  331
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGCTACAAAGAGTGATTGAGACCTTATTTCAATCAGTCAGTCAGT  349

seq1  CATGAAAATAAATAATCAATATTTCTTTATGTTAAATTGGGTAATCAGGC  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAATAAATAATCAATATTTCTTTATGTTAAATTGGGTAATCAGGC  399

seq1  TCACTCAATTTTTTTTTCAGATACACCAAGGAGAGACACTTATGAAATGT  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCAATTTTTTTTTCAGATACACCAAGGAGAGACACTTATGAAATGT  449

seq1  ATCCATTTAAATAAATCAAAGAATGCTACAGAGAATTATTAAACTTCAGA  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATTTAAATAAATCAAAGAATGCTACAGAGAATTATTAAACTTCAGA  499

seq1  ATGAAAGAAAAATCATTGTAAATTATAGGTTTTTCTCTGTACATAGTTTA  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGAAAAATCATTGTAAATTATAGGTTTTTCTCTGTACATAGTTTA  549

seq1  GTATTAGGAAAAAAAATCACATATATATACATATATATATATATATATTT  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAGGAAAAAAAATCACATATATATACATATATATATATATATATTT  599

seq1  CTCCACCTTTAGTTAACCTAAAAATAAAAAAAAACACACACCATACATTA  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACCTTTAGTTAACCTAAAAATAAAAAAAAACACACACCATACATTA  649

seq1  TAGTGAATCAATAATCCTTATTTTTGTCTAGAGTTTTTGTTTCATTTCGT  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAATCAATAATCCTTATTTTTGTCTAGAGTTTTTGTTTCATTTCGT  699

seq1  TTTGTTTTGTTGTTGTTTGCTTGCTTTTGGAGGTTTTATTTACACAAAGG  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGTTGTTGTTTGCTTGCTTTTGGAGGTTTTATTTACACAAAGG  749

seq1  CTTATGTAGCACAGGTTAGCCTCAAGCTCATATATAGACAAGTATGGCCT  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGTAGCACAGGTTAGCCTCAAGCTCATATATAGACAAGTATGGCCT  799

seq1  TTAATCTTTCTTCCCCAGTCTCCAGTTGTCCATACTGAGATTACAGATGT  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTTTCTTCCCCAGTCTCCAGTTGTCCATACTGAGATTACAGATGT  849

seq1  GCACTACCACACCAGGCTTATCAAATATGGAAGCTTCAACCCAGAGTTTC  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTACCACACCAGGCTTATCAAATATGGAAGCTTCAACCCAGAGTTTC  899

seq1  TTGCATGCTAGTCCAGCACTCCAAAAACGTACCAACATTGCTAGCAGCCC  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATGCTAGTCCAGCACTCCAAAAACGTACCAACATTGCTAGCAGCCC  949

seq1  ACATTATTTTTTGAAAATAAAAATAACTCAGTAATTATCCTCACATACAC  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATTTTTTGAAAATAAAAATAACTCAGTAATTATCCTCACATACAC  999

seq1  ATAATTGATACTACTTTTAAAGGATGTTTCCCTCATTAAGACAATAAAAT  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTGATACTACTTTTAAAGGATGTTTCCCTCATTAAGACAATAAAAT  1049

seq1  GTGAAGGATGTAGTTCATTTTAAGCAAGCCTCCTCTCTGTGCCACAATGA  1081
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGGATGTAGTTCATTTTAAGCAAGCCTCCTCTCTGTGCCACAATGA  1099

seq1  ATTC  1085
      ||||
seq2  ATTC  1103


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