BAC Information

Click to search

BAC

Clone NameB6Ng01-277F09
Chromosome13 (Build37)
Map Location 23,461,902 - 23,590,130
singlet/doubletdoublet
Overlap geneAbt1, Btn1a1, Btn2a2
Upstream geneV1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a
Downstream geneHist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017, Cmah
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277F09.bB6Ng01-277F09.g
ACCGA077884GA077885
length8731,152
definitionB6Ng01-277F09.b B6Ng01-277F09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,589,264 - 23,590,130)(23,461,902 - 23,463,062)
sequence
gaattctttctttctttctaataataataactgtagttggctcttcctac
agctctttcaagagtgataccaaacataaaacactgaccccgacgtgatt
tgaacacgcaaccttctgatctggagtcagacgcgctaccgttgcgccac
gaggtcacccaagaaggccttgataattgccatttaaccaaatccaaatc
tatgtaattagctgctgctatcctacagggatgaaggaattaataatctc
gacaagtcttttccttcgttcctgtccttcaaaggacgctaacaaaggtg
ggctctgacctctatacaggagactggtccttgtctgatgtggagccgac
ggttattagataccgatcaccttccagatcacatcactgtaccagagccc
gacacaacaattatgtctgccggagtcaggcgaggaatcctgactgccta
ggaaagtttcagaagccgaggatttttgtcctccagatctaaaataaata
gtaacttgataaccacttgatactgtgaacagaagcccactgctataaaa
cagtcagctttcttgaaataaaaattaaatttcacttttcagattgaaga
gaaagaggagaggagaggggaaaggggagagggaggaaaagaaagatagc
ccaggattcctactgggaattgtaaagggctttaaaaataatgtattgaa
aaagcttgtctctgatcctgtgtaggaggctgagtacatgatttatattt
cccttgttataatgaacctcatcactcactgggagtagtgggaaaggagt
tggagagtcagggataaactggggtttcttcttgcctccaagagtaaagt
ggcagtctggttgtcacttttat
gaattctctggtctggagaagaacttggattggctgttaaattctagagt
tagggtctgaggatggcaattatgtattctgaattcactaattcctgttt
tcagaatttgcagaatttctgcagcttattttaaattaaaattttaagac
aaaaaatcccaccagtgtcattcaaatatttaagttttttttcttagact
tattttctatgtatgggtgttttatcagcatatatgtgcacgtggtgtgt
gcgcgcgcactctaggaggatgtcagatcccctggaactggaataatgca
tggtttatgagctaccatgtgagtgctggctggaaaatgaaccagggtca
tcagcaagagcaagtggtcttaaatgctgagccatctctctagccctaat
tttaatatttaaataactttttattaactgtttttagtgtaagatgtacc
aaacacaattcgaatcacactatagaatgagctgtgtatggctatattag
gaagaaatgtacacatgttattgcaggagagtatgtgtttatgccatccc
cttcagctataagagtgttgagacaatggactcaaaggattggaattgtg
ataggagtcttctgctgagaacaaggaaaggactagggccttggccagtg
ggagagttagggcaggatttcacacagtcctgactgtgatgagtggggct
acttatgattgtagctaccaggactccttacttatgcacatctcatgacc
tttaaaatattctgaacgtcgtgttagtggttgaacccctttacttactc
ctcttcctagtgtgaccatattgagtaaaccgctttcactgctttgtctt
gcttgtctttttgacaaattgaagacaggtagctgagcctagcttggtag
agctaccaaggtccatgcatagactcttaacagccactgtaaaccggaag
attaacttgccgacttatacatttaataacggaagctgatttgaccagat
cattactggagccgccgccatacttatggctactcagagtattgtggggg
agtgctgacagcacattacggaggtgtgatagtgctgagccactttagtc
aaatatggtcaagcagtacctaatgcacctcaggtttctgaacatttcgt
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_23589264_23590130
seq2: B6Ng01-277F09.b_44_916 (reverse)

seq1  ATAAATGTGACAA-CAGACTGCCACTTTACTCTTTGATGGCAGTGGAAAA  49
      ||||| ||||||| |||||||||||||||||||| || |  ||  |||| 
seq2  ATAAAAGTGACAACCAGACTGCCACTTTACTCTTGGAGGCAAGAAGAAAC  50

seq1  CCATGTTTATCCCTGACTCTCCAACTCCTTT-CCACTACT-CCAGTGAAT  97
      ||  ||||||||||||||||||||||||||| |||||||| ||||||| |
seq2  CCCAGTTTATCCCTGACTCTCCAACTCCTTTCCCACTACTCCCAGTGAGT  100

seq1  GATGAGGTTCATTATAACAA-GGAAATAT-AATCATGTACTCAGCCTCCT  145
      |||||||||||||||||||| |||||||| ||||||||||||||||||||
seq2  GATGAGGTTCATTATAACAAGGGAAATATAAATCATGTACTCAGCCTCCT  150

seq1  ACACAGGATCAGAGACAAGCTTTTTCAATACATTA-TTTTAAAGCCCTTT  194
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACACAGGATCAGAGACAAGCTTTTTCAATACATTATTTTTAAAGCCCTTT  200

seq1  ACAATTCCCAGTAGGAATCCTGGGCTATCTTTCTTTTCCTCCCTCTCCCC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTCCCAGTAGGAATCCTGGGCTATCTTTCTTTTCCTCCCTCTCCCC  250

seq1  TTTCCCCTCTCCTCTCCTCTTTCTCTTCAATCTGAAAAGTGAAATTTAAT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCTCTCCTCTCCTCTTTCTCTTCAATCTGAAAAGTGAAATTTAAT  300

seq1  TTTTATTTCAAGAAAGCTGACTGTTTTATAGCAGTGGGCTTCTGTTCACA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTCAAGAAAGCTGACTGTTTTATAGCAGTGGGCTTCTGTTCACA  350

seq1  GTATCAAGTGGTTATCAAGTTACTATTTATTTTAGATCTGGAGGACAAAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAAGTGGTTATCAAGTTACTATTTATTTTAGATCTGGAGGACAAAA  400

seq1  ATCCTCGGCTTCTGAAACTTTCCTAGGCAGTCAGGATTCCTCGCCTGACT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCGGCTTCTGAAACTTTCCTAGGCAGTCAGGATTCCTCGCCTGACT  450

seq1  CCGGCAGACATAATTGTTGTGTCGGGCTCTGGTACAGTGATGTGATCTGG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCAGACATAATTGTTGTGTCGGGCTCTGGTACAGTGATGTGATCTGG  500

seq1  AAGGTGATCGGTATCTAATAACCGTCGGCTCCACATCAGACAAGGACCAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGATCGGTATCTAATAACCGTCGGCTCCACATCAGACAAGGACCAG  550

seq1  TCTCCTGTATAGAGGTCAGAGCCCACCTTTGTTAGCGTCCTTTGAAGGAC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGTATAGAGGTCAGAGCCCACCTTTGTTAGCGTCCTTTGAAGGAC  600

seq1  AGGAACGAAGGAAAAGACTTGTCGAGATTATTAATTCCTTCATCCCTGTA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACGAAGGAAAAGACTTGTCGAGATTATTAATTCCTTCATCCCTGTA  650

seq1  GGATAGCAGCAGCTAATTACATAGATTTGGATTTGGTTAAATGGCAATTA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGCAGCAGCTAATTACATAGATTTGGATTTGGTTAAATGGCAATTA  700

seq1  TCAAGGCCTTCTTGGGTGACCTCGTGGCGCAACGGTAGCGCGTCTGACTC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGCCTTCTTGGGTGACCTCGTGGCGCAACGGTAGCGCGTCTGACTC  750

seq1  CAGATCAGAAGGTTGCGTGTTCAAATCACGTCGGGGTCAGTGTTTTATGT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCAGAAGGTTGCGTGTTCAAATCACGTCGGGGTCAGTGTTTTATGT  800

seq1  TTGGTATCACTCTTGAAAGAGCTGTAGGAAGAGCCAACTACAGTTATTAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTATCACTCTTGAAAGAGCTGTAGGAAGAGCCAACTACAGTTATTAT  850

seq1  TATTAGAAAGAAAGAAAGAATTC  867
      |||||||||||||||||||||||
seq2  TATTAGAAAGAAAGAAAGAATTC  873

seq1: chr13_23461902_23463062
seq2: B6Ng01-277F09.g_68_1219

seq1  GAATTCTCTGGTCTGGAGAAGAACTTGGATTGGCTGTTAAATTCTAGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGTCTGGAGAAGAACTTGGATTGGCTGTTAAATTCTAGAGT  50

seq1  TAGGGTCTGAGGATGGCAATTATGTATTCTGAATTCACTAATTCCTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTCTGAGGATGGCAATTATGTATTCTGAATTCACTAATTCCTGTTT  100

seq1  TCAGAATTTGCAGAATTTCTGCAGCTTATTTTAAATTAAAATTTTAAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATTTGCAGAATTTCTGCAGCTTATTTTAAATTAAAATTTTAAGAC  150

seq1  AAAAAATCCCACCAGTGTCATTCAAATATTTAAGTTTTTTTTCTTAGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATCCCACCAGTGTCATTCAAATATTTAAGTTTTTTTTCTTAGACT  200

seq1  TATTTTCTATGTATGGGTGTTTTATCAGCATATATGTGCACGTGGTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTATGTATGGGTGTTTTATCAGCATATATGTGCACGTGGTGTGT  250

seq1  GCGCGCGCACTCTAGGAGGATGTCAGATCCCCTGGAACTGGAATAATGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCGCGCACTCTAGGAGGATGTCAGATCCCCTGGAACTGGAATAATGCA  300

seq1  TGGTTTATGAGCTACCATGTGAGTGCTGGCTGGAAAATGAACCAGGGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTATGAGCTACCATGTGAGTGCTGGCTGGAAAATGAACCAGGGTCA  350

seq1  TCAGCAAGAGCAAGTGGTCTTAAATGCTGAGCCATCTCTCTAGCCCTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAAGAGCAAGTGGTCTTAAATGCTGAGCCATCTCTCTAGCCCTAAT  400

seq1  TTTAATATTTAAATAACTTTTTATTAACTGTTTTTAGTGTAAGATGTACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATATTTAAATAACTTTTTATTAACTGTTTTTAGTGTAAGATGTACC  450

seq1  AAACACAATTCGAATCACACTATAGAATGAGCTGTGTATGGCTATATTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAATTCGAATCACACTATAGAATGAGCTGTGTATGGCTATATTAG  500

seq1  GAAGAAATGTACACATGTTATTGCAGGAGAGTATGTGTTTATGCCATCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAATGTACACATGTTATTGCAGGAGAGTATGTGTTTATGCCATCCC  550

seq1  CTTCAGCTATAAGAGTGTTGAGACAATGGACTCAAAGGATTGGAATTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCTATAAGAGTGTTGAGACAATGGACTCAAAGGATTGGAATTGTG  600

seq1  ATAGGAGTCTTCTGCTGAGAACAAGGAAAGGACTAGGGCCTTGGCCAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAGTCTTCTGCTGAGAACAAGGAAAGGACTAGGGCCTTGGCCAGTG  650

seq1  GGAGAGTTAGGGCAGGATTTCACACAGTCCTGACTGTGATGAGTGGGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGTTAGGGCAGGATTTCACACAGTCCTGACTGTGATGAGTGGGGCT  700

seq1  ACTTATGATTGTAGCTACCAGGACTCCTTACTTATGCACATCTCATGACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATGATTGTAGCTACCAGGACTCCTTACTTATGCACATCTCATGACC  750

seq1  TTTAAAATATTCTGAACGTCGTGTTAGTGGTTGAACCCCTTTACTTACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATATTCTGAACGTCGTGTTAGTGGTTGAACCCCTTTACTTACTC  800

seq1  CTCTTCCTAGTGTGACCATATTGAGTAAACCGCTTTCACTGCTTTGTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCTAGTGTGACCATATTGAGTAAACCGCTTTCACTGCTTTGTCTT  850

seq1  GCTTGTCTTTTTGACAAATTGAAGACAGGTAGCTGAGCCTAGCTTGGTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTCTTTTTGACAAATTGAAGACAGGTAGCTGAGCCTAGCTTGGTAG  900

seq1  AGCTACCAAGGTCCATGCATAGACTCTTAACAGCCACTGTAAACCGGAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACCAAGGTCCATGCATAGACTCTTAACAGCCACTGTAAACCGGAAG  950

seq1  ATTAACTTGCCGACTTATACATTTAATAACGGGAAGCTGATTTGAACCAG  1000
      |||||||||||||||||||||||||||||| ||||||||||||| |||||
seq2  ATTAACTTGCCGACTTATACATTTAATAAC-GGAAGCTGATTTG-ACCAG  998

seq1  AATCAATTACTGGAGCCGCCGCCATACTTATGGCTACCTCAGAGTATTGT  1050
       ||| ||||||||||||||||||||||||||||||| |||||||||||||
seq2  -ATC-ATTACTGGAGCCGCCGCCATACTTATGGCTA-CTCAGAGTATTGT  1045

seq1  GGGGAAGTGCTGGACAGCACATTACGAAGGTGTGATAAGTGCTGAGCCAC  1100
      |||| |||||| |||||||||||||| ||||||||| |||||||||||||
seq2  GGGGGAGTGCT-GACAGCACATTACGGAGGTGTGAT-AGTGCTGAGCCAC  1093

seq1  TTTAGTCAAAATATTGGCCCAAGCAGAGTACTTAGTGCA-CTCA-GTTTC  1148
      ||||||| ||||||  |  |||||  ||||| || |||| |||| |||||
seq2  TTTAGTC-AAATAT--GGTCAAGC--AGTACCTAATGCACCTCAGGTTTC  1138

seq1  TGAACA-TTCGTTG  1161
      |||||| |||||||
seq2  TGAACATTTCGTTG  1152